View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5620_low_1 (Length: 250)

Name: NF5620_low_1
Description: NF5620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5620_low_1
NF5620_low_1
[»] chr6 (8 HSPs)
chr6 (14-250)||(357139-357375)
chr6 (66-216)||(31954809-31954959)
chr6 (63-241)||(3768055-3768229)
chr6 (166-248)||(2588765-2588843)
chr6 (89-150)||(33558275-33558336)
chr6 (63-99)||(11752930-11752966)
chr6 (63-99)||(7509633-7509669)
chr6 (157-250)||(12622501-12622590)
[»] chr4 (16 HSPs)
chr4 (63-247)||(37861163-37861343)
chr4 (63-250)||(46963829-46964012)
chr4 (59-223)||(16692094-16692258)
chr4 (87-193)||(2319166-2319272)
chr4 (88-250)||(19399832-19399989)
chr4 (91-218)||(44540114-44540242)
chr4 (87-219)||(30468668-30468802)
chr4 (60-134)||(38502163-38502237)
chr4 (122-250)||(46362766-46362890)
chr4 (72-250)||(45891763-45891938)
chr4 (62-250)||(30666829-30667013)
chr4 (58-141)||(27381959-27382042)
chr4 (61-250)||(30617538-30617729)
chr4 (84-248)||(51164523-51164683)
chr4 (63-99)||(3528014-3528050)
chr4 (166-210)||(10401535-10401579)
[»] chr5 (14 HSPs)
chr5 (88-250)||(523625-523783)
chr5 (72-247)||(5735968-5736140)
chr5 (89-250)||(30210-30367)
chr5 (114-219)||(15472837-15472942)
chr5 (154-247)||(6825441-6825530)
chr5 (64-188)||(19521462-19521586)
chr5 (108-197)||(14631489-14631579)
chr5 (90-182)||(4400394-4400484)
chr5 (72-208)||(3494472-3494608)
chr5 (65-100)||(8041037-8041072)
chr5 (114-188)||(23263006-23263079)
chr5 (60-178)||(12453854-12453966)
chr5 (212-248)||(15591782-15591819)
chr5 (59-99)||(33741594-33741634)
[»] chr2 (16 HSPs)
chr2 (66-250)||(5577964-5578144)
chr2 (91-223)||(20556766-20556897)
chr2 (102-250)||(26009595-26009740)
chr2 (62-218)||(35977314-35977470)
chr2 (88-247)||(34074123-34074279)
chr2 (91-142)||(3095779-3095830)
chr2 (66-141)||(37980410-37980485)
chr2 (53-141)||(21620625-21620713)
chr2 (72-140)||(28631687-28631755)
chr2 (83-150)||(9707131-9707198)
chr2 (68-150)||(43592740-43592822)
chr2 (95-203)||(4570744-4570851)
chr2 (66-102)||(9950400-9950436)
chr2 (174-247)||(13748052-13748121)
chr2 (63-99)||(13748197-13748233)
chr2 (105-219)||(22348687-22348800)
[»] chr7 (15 HSPs)
chr7 (62-216)||(16831564-16831718)
chr7 (99-224)||(47375800-47375924)
chr7 (88-201)||(30003785-30003898)
chr7 (96-247)||(21212671-21212816)
chr7 (65-244)||(12879649-12879825)
chr7 (96-215)||(39511188-39511307)
chr7 (62-131)||(42244391-42244460)
chr7 (62-221)||(20011227-20011385)
chr7 (63-213)||(38850519-38850673)
chr7 (63-141)||(18700028-18700106)
chr7 (63-141)||(27390150-27390228)
chr7 (61-99)||(32786924-32786962)
chr7 (62-100)||(33645162-33645200)
chr7 (86-159)||(32948311-32948384)
chr7 (63-135)||(41894652-41894724)
[»] chr1 (19 HSPs)
chr1 (86-247)||(34462722-34462879)
chr1 (113-249)||(18919256-18919388)
chr1 (60-219)||(1640152-1640308)
chr1 (101-205)||(40619520-40619624)
chr1 (83-250)||(37705310-37705473)
chr1 (60-141)||(45948871-45948952)
chr1 (113-210)||(24439145-24439242)
chr1 (87-250)||(51540670-51540836)
chr1 (105-188)||(2144576-2144661)
chr1 (63-141)||(30512558-30512636)
chr1 (59-141)||(34967721-34967803)
chr1 (102-223)||(8301697-8301818)
chr1 (101-181)||(47853508-47853591)
chr1 (168-203)||(28924126-28924161)
chr1 (166-210)||(1607354-1607398)
chr1 (63-103)||(1780508-1780548)
chr1 (63-99)||(16394959-16394995)
chr1 (164-216)||(26758486-26758538)
chr1 (63-119)||(30058471-30058527)
[»] chr8 (10 HSPs)
chr8 (62-219)||(7637600-7637756)
chr8 (61-250)||(18181666-18181850)
chr8 (86-250)||(7042570-7042730)
chr8 (62-198)||(114088-114224)
chr8 (106-219)||(39699442-39699556)
chr8 (61-223)||(43108600-43108760)
chr8 (63-140)||(43351941-43352018)
chr8 (58-137)||(9399623-9399702)
chr8 (63-142)||(44813944-44814022)
chr8 (63-100)||(374337-374374)
[»] chr3 (12 HSPs)
chr3 (72-195)||(39625066-39625189)
chr3 (104-219)||(39956153-39956267)
chr3 (68-181)||(11076901-11077014)
chr3 (64-142)||(32024301-32024379)
chr3 (60-188)||(50129086-50129215)
chr3 (63-182)||(5050551-5050669)
chr3 (59-250)||(50170444-50170633)
chr3 (84-219)||(41242157-41242292)
chr3 (59-100)||(34408161-34408202)
chr3 (107-187)||(45318207-45318288)
chr3 (64-93)||(45628451-45628480)
chr3 (72-141)||(50164065-50164134)
[»] scaffold0024 (1 HSPs)
scaffold0024 (63-216)||(33153-33307)
[»] scaffold0192 (1 HSPs)
scaffold0192 (69-181)||(13423-13535)


Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 357375 - 357139
Alignment:
Q  14 tcatcaaacatgacacaatcaaagctaactttaaaaataattacattatgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacg 113  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  357375 tcatcaaacatgacacaatcaacgctaactttaaaaataattacattatgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacg 357276  T
Q  114 aattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  357275 aattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaataaatttctacatttggcttctaaa 357176  T
Q  214 cttgtgtcttccttaagggcacaagttagcatttccc 250  Q
     ||||||||||||||||||||||||||||||||||||    
T  357175 tttgtgtcttccttaagggcacaagttagcatttccc 357139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 66 - 216
Target Start/End: Complemental strand, 31954959 - 31954809
Alignment:
Q  66 tcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaac 165  Q
    ||||| |||||||||||| | ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||| ||| ||||||| ||    
T  31954959 tcatgttaacttgtgtccaatgggcacaagttaaagttctaaaaaaggaattaaaacataagttttgtattgaaaaaataagtttttaaattttcaagac 31954860  T
Q  166 attgaatgcacaattttcaaaaataaatttttacatttggtttctaaactt 216  Q
    |||| ||||| |||||  |||| ||| ||||||||||||| ||||||||||    
T  31954859 attgtatgcataatttctaaaattaagtttttacatttggcttctaaactt 31954809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 241
Target Start/End: Complemental strand, 3768229 - 3768055
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaac-taagtttgtaacttttca 161  Q
    ||||| || ||||||||| |||||| || ||||||||  ||||||||||  ||||||| |||||  ||||||||||||||  | ||||| ||||||||||    
T  3768229 gggtcgtgttaacttgtgccctaagagctcaagttaagaatctaaaaaaa-aattaaagcataaactttgtattgaaaaaaatgagtttttaacttttca 3768131  T
Q  162 aaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagtta 241  Q
    | | ||||||| |||||||| ||||||||| |||||||| |||  | |||||||||||    ||||||||||||||||||    
T  3768130 agatattgaatacacaatttccaaaaataagtttttacacttgactactaaacttgtg----ccttaagggcacaagtta 3768055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 2588843 - 2588765
Alignment:
Q  166 attgaatgcacaattttcaaaaataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcatttc 248  Q
    |||||||||||||||||||||| ||| ||| |||||||||||| |||||||||||    ||||||||||||||||| ||||||    
T  2588843 attgaatgcacaattttcaaaattaagtttctacatttggtttataaacttgtgt----cttaagggcacaagttaacatttc 2588765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 33558275 - 33558336
Alignment:
Q  89 gcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagttt 150  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||||| | || |||||||    
T  33558275 gcacaagttaaagatctaaaaaaagaattaaaacataaattttgtattgtataaataagttt 33558336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 11752930 - 11752966
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaa 99  Q
    |||||||| ||||||||||||||||||||||||||||    
T  11752930 gggtcatgttaacttgtgtcctaagggcacaagttaa 11752966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Original strand, 7509633 - 7509669
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaa 99  Q
    |||||||||||||||||| |||||||||||| |||||    
T  7509633 gggtcatgctaacttgtgccctaagggcacatgttaa 7509669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 12622590 - 12622501
Alignment:
Q  157 tttcaaaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcatttccc 250  Q
    |||||| |||||||||||||||||| |||||| ||| || ||| ||| ||| || ||||| ||    ||| |||||||||||||| ||||||||    
T  12622590 tttcaagacattgaatgcacaatttacaaaaaaaaacttctacttttagttccttaacttatg----cctcaagggcacaagttaacatttccc 12622501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 63 - 247
Target Start/End: Complemental strand, 37861343 - 37861163
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaa 162  Q
    |||||||| ||||||||| ||| | |||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||| |||  ||||||    
T  37861343 gggtcatgttaacttgtgcccttaaggcacaagttaaggatctaaaaaaagaattaaaacataagttttgtattgaaaaaataactttttaaactttcaa 37861244  T
Q  163 aacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcattt 247  Q
     |||||||||||||||||| ||||| ||| ||| |||||||||||||||||||||||    |||||||||||||||||| |||||    
T  37861243 gacattgaatgcacaatttccaaaattaagtttctacatttggtttctaaacttgtg----ccttaagggcacaagttaacattt 37861163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 63 - 250
Target Start/End: Original strand, 46963829 - 46964012
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaa 162  Q
    |||||||| ||||||||| ||| | |||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||| ||| |||  ||||||    
T  46963829 gggtcatgttaacttgtggccttaaggcacaagttaaggatctaaaaaaagaattaaaacataagttttgtattgaaaaaataactttttaaactttcaa 46963928  T
Q  163 aacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcatttccc 250  Q
     ||||||||||||| |||| ||||| ||| ||| |||||||||||||||||||||||    |||||||||||||||||| ||||||||    
T  46963929 gacattgaatgcacgatttccaaaattaagtttctacatttggtttctaaacttgtg----ccttaagggcacaagttaacatttccc 46964012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 59 - 223
Target Start/End: Complemental strand, 16692258 - 16692094
Alignment:
Q  59 ttatgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttt 158  Q
    ||||||||| || ||||||||| | | ||||||||||||||  |||||||||  ||| |||||||||||||||||||||||||  ||| ||| |||||||    
T  16692258 ttatgggtcgtgttaacttgtgccatcagggcacaagttaagaatctaaaaagagaaataaaacataagttttgtattgaaaatataaatttttaacttt 16692159  T
Q  159 tcaaaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaacttgtgtctt 223  Q
    |||| | ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||    
T  16692158 tcaagatattgaatgcacaattttcaaaaataaatttttatatttggcttctaaacttatgtctt 16692094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 87 - 193
Target Start/End: Complemental strand, 2319272 - 2319166
Alignment:
Q  87 gggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaa 186  Q
    ||||||||||||| ||||||||| | ||| ||||  || ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  2319272 gggcacaagttaaggatctaaaagaagaactaaattatgagttttgtattgaaaaaataagtttttaacttttcaaaacattgaatgcacaattttcaaa 2319173  T
Q  187 aataaat 193  Q
    |||||||    
T  2319172 aataaat 2319166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 250
Target Start/End: Complemental strand, 19399989 - 19399832
Alignment:
Q  88 ggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaa 187  Q
    ||||||||||||  ||||||||||  ||||||| ||||| ||||||||||||||| ||||||| ||| ||||||| |||||||||||||||||| |||||    
T  19399989 ggcacaagttaagaatctaaaaaat-aattaaagcataaattttgtattgaaaaaataagtttttaaattttcaagacattgaatgcacaatttccaaaa 19399891  T
Q  188 ataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcatttccc 250  Q
    |||| ||| || |||||| | ||||||||||||    |||||||||||||||||  |||||||    
T  19399890 ataagtttctatatttggctactaaacttgtgt----cttaagggcacaagttaatatttccc 19399832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 44540114 - 44540242
Alignment:
Q  91 acaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaac-taagtttgtaacttttcaaaacattgaatgcacaattttcaaaaat 189  Q
    |||| |||| ||||||||||  ||||||||| ||||||||| ||||||||||  ||||||| |||| |||||| |||| |||||||||||||  ||||||    
T  44540114 acaatttaatgatctaaaaatagaattaaaatataagttttatattgaaaaagataagtttttaacatttcaagacatcgaatgcacaatttctaaaaat 44540213  T
Q  190 aaatttttacatttggtttctaaacttgt 218  Q
    |||||||||| ||||| ||||||||||||    
T  44540214 aaatttttacgtttggcttctaaacttgt 44540242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 30468668 - 30468802
Alignment:
Q  87 gggcacaagttaaagatctaaaaaac-gaattaaaacataagttttgtattgaaaaac-taagtttgtaacttttcaaaacattgaatgcacaattttca 184  Q
    ||||||| ||||| |||||||||||  ||||||||| ||||||||||||||||||||  ||| ||| |||  |||||| | |||||||| ||||||| ||    
T  30468668 gggcacaggttaaggatctaaaaaaaagaattaaaatataagttttgtattgaaaaaaataactttttaaactttcaacaaattgaatgtacaatttcca 30468767  T
Q  185 aaaataaatttttacatttggtttctaaacttgtg 219  Q
    ||| ||| ||| || ||||||||||||||||||||    
T  30468768 aaattaagtttctatatttggtttctaaacttgtg 30468802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 38502237 - 38502163
Alignment:
Q  60 tatgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgta 134  Q
    |||| ||||||||||||| |||||| |||||||||||||| ||||||||||| |||||||||||||||| |||||    
T  38502237 tatgagtcatgctaacttatgtccttagggcacaagttaatgatctaaaaaaagaattaaaacataagtgttgta 38502163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 250
Target Start/End: Original strand, 46362766 - 46362890
Alignment:
Q  122 cataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaacttgtgtc 221  Q
    ||||||||||||||||||||| ||| |||  ||  |||||| |||||||||||||||||| ||||| ||| ||| |||| ||| ||| ||||||||||      
T  46362766 cataagttttgtattgaaaaaataacttttaaaactttcaagacattgaatgcacaatttccaaaattaagtttctacagttgttttataaacttgtg-- 46362863  T
Q  222 ttccttaagggcacaagttagcatttccc 250  Q
      | |||||||||||||||| ||||||||    
T  46362864 --ctttaagggcacaagttaacatttccc 46362890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 72 - 250
Target Start/End: Complemental strand, 45891938 - 45891763
Alignment:
Q  72 taacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgt-attgaaaaactaagtttgtaacttttcaaaacattga 170  Q
    ||||||||| ||||||||||||||||||  |||||||||  |||||||| ||||| ||||||  |||||||| |||| || ||| |||| |  |||||||    
T  45891938 taacttgtgccctaagggcacaagttaagaatctaaaaatagaattaaatcataatttttgtctttgaaaaaataagattttaaatttttaggacattga 45891839  T
Q  171 atgcacaattttcaaaaataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcatttccc 250  Q
    ||||||||| | ||| || |  ||| ||  |||||||||| ||||||||    ||||||| |||||||||| ||||||||    
T  45891838 atgcacaatctccaacaaaatgtttctaactttggtttcttaacttgtg----ccttaagagcacaagttaacatttccc 45891763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 62 - 250
Target Start/End: Complemental strand, 30667013 - 30666829
Alignment:
Q  62 tgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagttt-gtaacttttc 160  Q
    ||||||||| ||||||||| |||||||||||||||||| || || ||||  ||| | ||| |||| |||| ||||| ||   ||| ||| | |||||||     
T  30667013 tgggtcatgttaacttgtgccctaagggcacaagttaaggagcttaaaatagaaattaaaaataaattttatattggaagtataacttttgcaactttt- 30666915  T
Q  161 aaaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcatttccc 250  Q
    || ||||||||||||||| || |||||| ||  || |||||||||||||| ||||||||    ||| |||||||||||||| ||||||||    
T  30666914 aagacattgaatgcacaagttccaaaaaaaaccttctacatttggtttcttaacttgtg----cctcaagggcacaagttaacatttccc 30666829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 141
Target Start/End: Original strand, 27381959 - 27382042
Alignment:
Q  58 attatgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaa 141  Q
    |||| |||||||| ||||||||||||||||||||||||||||  | |||||||  |||||||||  ||| |||| |||||||||    
T  27381959 attaagggtcatgttaacttgtgtcctaagggcacaagttaagaaactaaaaatggaattaaaaagtaacttttatattgaaaa 27382042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 250
Target Start/End: Original strand, 30617538 - 30617729
Alignment:
Q  61 atgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaa-gtttgtaactttt 159  Q
    |||||||||||||||||||| ||| |||||||||||||| || || ||||  |||||| ||  ||| |||| ||||||||   |||  |||| |||||||    
T  30617538 atgggtcatgctaacttgtgcccttagggcacaagttaaggagcttaaaatagaattagaaagtaaattttatattgaaaggataacttttgaaactttt 30617637  T
Q  160 caaaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaacttgtg--tcttccttaagggcacaagttagcatttccc 250  Q
     || | |||||||||||||||| ||| || ||| || || ||||||||||| ||||| ||   |  ||  |||||||||||||||||||||||    
T  30617638 -aagagattgaatgcacaatttccaagaaaaaacttctatatttggtttcttaacttatgccacaaccacaagggcacaagttagcatttccc 30617729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 248
Target Start/End: Original strand, 51164523 - 51164683
Alignment:
Q  84 taagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagttt-gtaacttttcaaaacattgaatgcacaatttt 182  Q
    ||||| |||||||||| || || ||||  |||||||   |||| |||| |||||||||| ||| ||| | ||||||| || |||||||||||||| ||||    
T  51164523 taaggacacaagttaaggaacttaaaatagaattaagtaataaattttatattgaaaaaataacttttgaaactttt-aagacattgaatgcacactttt 51164621  T
Q  183 caaaaataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcatttc 248  Q
    ||| || ||||||  |||||| |||||| ||||    ||| ||| |||||||||||||| ||||||    
T  51164622 caagaaaaaatttccacatttagtttcttaact----tctgcctcaagggcacaagttaacatttc 51164683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 3528050 - 3528014
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaa 99  Q
    ||||||||||||||||||||||||||| ||| |||||    
T  3528050 gggtcatgctaacttgtgtcctaagggaacatgttaa 3528014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 10401535 - 10401579
Alignment:
Q  166 attgaatgcacaattttcaaaaataaatttttacatttggtttct 210  Q
    ||||||||||||| |||||| || || ||||||||||||||||||    
T  10401535 attgaatgcacaaatttcaataaaaactttttacatttggtttct 10401579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 1e-43; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 88 - 250
Target Start/End: Complemental strand, 523783 - 523625
Alignment:
Q  88 ggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaa 187  Q
    |||||||||||| | ||||||||| |||||||||||||| ||||||||||||||  ||| ||| |||| |||||| ||||| ||||||||||||||||||    
T  523783 ggcacaagttaaggttctaaaaaaagaattaaaacataacttttgtattgaaaatataaatttttaacctttcaagacattaaatgcacaattttcaaaa 523684  T
Q  188 ataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcatttccc 250  Q
    ||||||||||| |||||| |||||||||||||    |||||||||||||||||| ||||||||    
T  523683 ataaatttttatatttggcttctaaacttgtg----ccttaagggcacaagttaacatttccc 523625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 72 - 247
Target Start/End: Original strand, 5735968 - 5736140
Alignment:
Q  72 taacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaac-taagtttgtaacttttcaaaacattga 170  Q
    ||||||||| ||||||| ||||||||||  |||||||||| |||||||||||||  |||| ||||||||||  ||||||| |||||||| || |||||||    
T  5735968 taacttgtgccctaaggccacaagttaagaatctaaaaaaagaattaaaacatagattttttattgaaaaaaataagtttttaacttttgaagacattga 5736067  T
Q  171 atgcacaattttcaaaaataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcattt 247  Q
    ||||||||||| ||||||||| ||| ||||||||| | |||||||||| |    ||||||||||||||||| |||||    
T  5736068 atgcacaatttccaaaaataagtttctacatttggctactaaacttgtat----cttaagggcacaagttaacattt 5736140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 250
Target Start/End: Complemental strand, 30367 - 30210
Alignment:
Q  89 gcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaa 188  Q
    |||||||||||| ||| |||||| ||||||||| ||||||||||||||||||||  |||| | |||| |||||| |||||||||| |||||||||||||     
T  30367 gcacaagttaaaaatccaaaaaaagaattaaaatataagttttgtattgaaaaataaagtgtttaacctttcaagacattgaatggacaattttcaaaat 30268  T
Q  189 taaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcatttccc 250  Q
    | ||||| ||||||||| |||| ||||| ||    |||||| || ||| |||||||||||||    
T  30267 tcaatttctacatttggcttcttaacttatg----ccttaatggtacatgttagcatttccc 30210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 114 - 219
Target Start/End: Complemental strand, 15472942 - 15472837
Alignment:
Q  114 aattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaa 213  Q
    |||||||| |||||||||||||||||||| ||||||| ||| |||| || | |||||||||||||||| ||||||||| ||| |||||||   |||||||    
T  15472942 aattaaaatataagttttgtattgaaaaaataagtttttaatttttaaagatattgaatgcacaatttccaaaaataagtttctacatttaacttctaaa 15472843  T
Q  214 cttgtg 219  Q
    ||||||    
T  15472842 cttgtg 15472837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 154 - 247
Target Start/End: Original strand, 6825441 - 6825530
Alignment:
Q  154 acttttcaaaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcattt 247  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||| ||||| || ||||||||||    |||||||||||||| ||| |||||    
T  6825441 acttttcaagacattgaatgcacaattttcaaaaataagtttttacgtttggcttttaaacttgtg----ccttaagggcacaaattaacattt 6825530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 19521586 - 19521462
Alignment:
Q  64 ggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaa-actaagtttgtaacttttcaa 162  Q
    ||||||| ||||||||| ||||| |||| |||||||| |  ||||||  ||||||||| |||| |||||||||||||| || || |||  ||||||| ||    
T  19521586 ggtcatgttaacttgtgacctaaaggcagaagttaaaaaattaaaaatggaattaaaaaataacttttgtattgaaaagacaaaattttaaactttt-aa 19521488  T
Q  163 aacattgaatgcacaattttcaaaaa 188  Q
     |||||||||||||||||||||||||    
T  19521487 tacattgaatgcacaattttcaaaaa 19521462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 14631579 - 14631489
Alignment:
Q  108 aaaacgaattaaaacataagttttgtattgaaaa-actaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaataaattttt 197  Q
    |||| |||||||||||||||||||||||| |||| |  | |||| |||| ||| ||||||||||||| |||||||| |||| ||| |||||    
T  14631579 aaaaagaattaaaacataagttttgtattaaaaagaaaatgtttttaaccttttaaaacattgaatgtacaatttttaaaattaagttttt 14631489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 4400484 - 4400394
Alignment:
Q  90 cacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaatttt 182  Q
    |||||||||||||  | ||||  ||||||||||||||||||  |||||||||| ||| ||| ||| ||||||||| |||||| | ||||||||    
T  4400484 cacaagttaaagaggtgaaaagggaattaaaacataagttt--tattgaaaaaataaatttttaaattttcaaaatattgaacgtacaatttt 4400394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 208
Target Start/End: Original strand, 3494472 - 3494608
Alignment:
Q  72 taacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaa 171  Q
    ||||||||| | ||||| |||||| ||| ||||||||||  ||||||||| |||| | ||||||| ||||  ||| ||| ||| |||| || |   ||||    
T  3494472 taacttgtgccttaaggacacaagataaggatctaaaaatggaattaaaaaataaatgttgtattaaaaagataaatttttaagtttttaagattatgaa 3494571  T
Q  172 tgcacaattttcaaaaataaatttttacatttggttt 208  Q
    |||||||||||||| |  ||||||||| |||| ||||    
T  3494572 tgcacaattttcaagatcaaatttttatatttagttt 3494608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 100
Target Start/End: Original strand, 8041037 - 8041072
Alignment:
Q  65 gtcatgctaacttgtgtcctaagggcacaagttaaa 100  Q
    ||||||||||||||||| ||||||||||||||||||    
T  8041037 gtcatgctaacttgtgttctaagggcacaagttaaa 8041072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 188
Target Start/End: Complemental strand, 23263079 - 23263006
Alignment:
Q  114 aattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaa 188  Q
    |||||||| |||| ||||||||||||||  |||  || ||| |||| || |||||||||||||||||||||||||    
T  23263079 aattaaaatataacttttgtattgaaaatataaaattttaaatttt-aatacattgaatgcacaattttcaaaaa 23263006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 178
Target Start/End: Original strand, 12453854 - 12453966
Alignment:
Q  60 tatgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaa-cgaattaaaacataagttttgtattgaaaaactaagtttgtaacttt 158  Q
    |||||||||||||||||||||       |||||||||||| || |||||||| |||||||||| | |||||||| ||||||||  ||| ||| ||| |||    
T  12453854 tatgggtcatgctaacttgtg-------ggcacaagttaaggagctaaaaaagcgaattaaaagacaagttttgcattgaaaagataaatttttaaattt 12453946  T
Q  159 tcaaaacattgaatgcacaa 178  Q
    | || | ||||||| |||||    
T  12453947 ttaagatattgaatacacaa 12453966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 15591782 - 15591819
Alignment:
Q  212 aacttgtgtctt-ccttaagggcacaagttagcatttc 248  Q
    |||||||||||| |||||||||||||||||||||||||    
T  15591782 aacttgtgtcttgccttaagggcacaagttagcatttc 15591819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 33741594 - 33741634
Alignment:
Q  59 ttatgggtcatgctaacttgtgtcctaagggcacaagttaa 99  Q
    |||||||||||| ||||||||||| |||||| |||||||||    
T  33741594 ttatgggtcatgttaacttgtgtcataagggaacaagttaa 33741634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 66 - 250
Target Start/End: Complemental strand, 5578144 - 5577964
Alignment:
Q  66 tcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaac 165  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||||  |||||||||||||| ||||||||||||||| ||||||| |||  |||||| |     
T  5578144 tcatgttaacttgtgtcataagggcacaagttaaggatctaaaaagagaattaaaacataaattttgtattgaaaaaataagtttttaaactttcaagat 5578045  T
Q  166 attgaatgcacaattttcaaaaataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcatttccc 250  Q
    ||| |||||||||||| ||||| |||||||  ||||||||||||||||||||||    |||||||| ||||| ||| ||||||||    
T  5578044 attaaatgcacaatttccaaaattaaatttcgacatttggtttctaaacttgtg----ccttaaggacacaaattaacatttccc 5577964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 223
Target Start/End: Complemental strand, 20556897 - 20556766
Alignment:
Q  91 acaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaata 190  Q
    |||||||||  |||||||| | |||||||||||||||||||||||||||||| ||||||| ||| ||||||| ||||||||||||| |||| ||||| ||    
T  20556897 acaagttaagaatctaaaagaagaattaaaacataagttttgtattgaaaaaataagttt-taaattttcaagacattgaatgcacgatttccaaaatta 20556799  T
Q  191 aatttttacatttggtttctaaacttgtgtctt 223  Q
    | ||| ||||||| |||||||||||||||||||    
T  20556798 agtttctacatttagtttctaaacttgtgtctt 20556766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 102 - 250
Target Start/End: Original strand, 26009595 - 26009740
Alignment:
Q  102 atctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttca-aaacattgaatgcacaattttcaaaaataaatttttaca 200  Q
    |||||||||| ||||||||||||||||||||||||| |||| ||||||| |||  ||||| | ||||||||||||| |||| ||||| || |||| ||||    
T  26009595 atctaaaaaaagaattaaaacataagttttgtattggaaaaataagtttttaaactttcagagacattgaatgcacgatttccaaaattatatttctaca 26009694  T
Q  201 tttggtttctaaacttgtgtcttccttaagggcacaagttagcatttccc 250  Q
    ||| | |||||||||||||    |||||||||||||||||||||||||||    
T  26009695 tttagcttctaaacttgtg----ccttaagggcacaagttagcatttccc 26009740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 62 - 218
Target Start/End: Complemental strand, 35977470 - 35977314
Alignment:
Q  62 tgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttca 161  Q
    ||||| ||| ||||||||||| | | |||||||||||| ||||||||||| ||||||||| ||||||||| |||||||||| ||| ||| ||| ||||||    
T  35977470 tgggttatgttaacttgtgtctttaaggcacaagttaaggatctaaaaaaagaattaaaatataagttttatattgaaaaaataactttttaaattttca 35977371  T
Q  162 aaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaacttgt 218  Q
    | |||||||||||| |||||  |||| ||| |||||||||| | ||| |||||||||    
T  35977370 agacattgaatgcataatttctaaaattaagtttttacattcgatttttaaacttgt 35977314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 88 - 247
Target Start/End: Complemental strand, 34074279 - 34074123
Alignment:
Q  88 ggcacaagttaaagatctaaaaaacg-aattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaa 186  Q
    ||||||||||||  |||||||||| | ||||||||||||||||||||||||||||| |||| || |||  |||||||||||||||||||| |||| ||||    
T  34074279 ggcacaagttaagaatctaaaaaaaggaattaaaacataagttttgtattgaaaaaataagcttttaaactttcaaaacattgaatgcacgatttccaaa 34074180  T
Q  187 aataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcattt 247  Q
    |  |||||| |||||||   ||||||||||||||     || |||||||||||||||||||    
T  34074179 atgaaatttctacatttaacttctaaacttgtgt----tttgagggcacaagttagcattt 34074123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 3095779 - 3095830
Alignment:
Q  91 acaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaa 142  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||||||||||    
T  3095779 acaagttaaagatctaaaaaaagaattaaaatataaattttgtattgaaaaa 3095830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 37980485 - 37980410
Alignment:
Q  66 tcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaa 141  Q
    ||||| ||||||||||||||||||||||||||||  | |||||||  |||||||||  ||| ||||||||||||||    
T  37980485 tcatgttaacttgtgtcctaagggcacaagttaagaaactaaaaatggaattaaaaagtaacttttgtattgaaaa 37980410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 141
Target Start/End: Original strand, 21620625 - 21620713
Alignment:
Q  53 attacattatgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaa 141  Q
    |||||| ||||||||||  ||||||||| |||||||||||||||||| || || ||||  ||| ||||| ||||||||| || ||||||    
T  21620625 attacaatatgggtcatcttaacttgtgccctaagggcacaagttaaggaacttaaaatggaaataaaaaataagttttataatgaaaa 21620713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 140
Target Start/End: Original strand, 28631687 - 28631755
Alignment:
Q  72 taacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaa 140  Q
    ||||||||| |||||||||||||||||| || |||||||| ||| ||| | || | |||||||||||||    
T  28631687 taacttgtgccctaagggcacaagttaaggagctaaaaaaagaaataataaatcaattttgtattgaaa 28631755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 83 - 150
Target Start/End: Complemental strand, 9707198 - 9707131
Alignment:
Q  83 ctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagttt 150  Q
    ||||||||||||| ||||||||||||||  ||||||||| |||| | ||| ||||||||  |||||||    
T  9707198 ctaagggcacaagataaagatctaaaaatagaattaaaaaataaatgttgcattgaaaagataagttt 9707131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 43592822 - 43592740
Alignment:
Q  68 atgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagttt 150  Q
    ||||||||||||| ||| |||||||||| ||||||||| ||||  |||| |||  |||| | ||||||||||||  |||||||    
T  43592822 atgctaacttgtgcccttagggcacaagataaagatcttaaaatagaatgaaacaataaatattgtattgaaaagataagttt 43592740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 4570744 - 4570851
Alignment:
Q  95 gttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaataaatt 194  Q
    ||||||||||||||||| ||||||||||||||  |||  ||| ||||  |||||||  ||  ||| || |||||||||| |||||||| |||| ||| ||    
T  4570744 gttaaagatctaaaaaa-gaattaaaacataatatttaaattaaaaatataagttttaaatcttttaagacattgaatgtacaatttttaaaattaattt 4570842  T
Q  195 tttacattt 203  Q
    |||| ||||    
T  4570843 tttatattt 4570851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 102
Target Start/End: Complemental strand, 9950436 - 9950400
Alignment:
Q  66 tcatgctaacttgtgtcctaagggcacaagttaaaga 102  Q
    |||||||||||||||| ||||||||||| ||||||||    
T  9950436 tcatgctaacttgtgttctaagggcacatgttaaaga 9950400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 247
Target Start/End: Complemental strand, 13748121 - 13748052
Alignment:
Q  174 cacaattttcaaaaataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcattt 247  Q
    |||||||||||| | || |||| |||||||||||||| ||| |||    ||| |||||||||||||||||||||    
T  13748121 cacaattttcaagattatatttctacatttggtttcttaacatgt----tccctaagggcacaagttagcattt 13748052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 13748233 - 13748197
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaa 99  Q
    |||||||||||||||||  ||||||||||||||||||    
T  13748233 gggtcatgctaacttgttccctaagggcacaagttaa 13748197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 219
Target Start/End: Original strand, 22348687 - 22348800
Alignment:
Q  105 taaaaaacgaattaaaacataagttttg-tattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaataaatttttacattt 203  Q
    ||||||| ||||||||| | |||||||| | |||||||  ||| ||| |||  ||| |||| |||||||||||||||||||| || | ||||||| ||||    
T  22348687 taaaaaaggaattaaaagacaagttttgatgttgaaaa--taattttttaaacttttaaaatattgaatgcacaattttcaagaaaatatttttatattt 22348784  T
Q  204 ggtttctaaacttgtg 219  Q
     ||||||  |||||||    
T  22348785 agtttctttacttgtg 22348800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 62 - 216
Target Start/End: Original strand, 16831564 - 16831718
Alignment:
Q  62 tgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttca 161  Q
    ||||||||| ||||||||||||| |||||||||||||| ||| ||||||  ||| |||||||||||||||||||||||||  ||||||| ||||||||||    
T  16831564 tgggtcatgttaacttgtgtccttagggcacaagttaaggatgtaaaaatagaaataaaacataagttttgtattgaaaatataagtttttaacttttca 16831663  T
Q  162 aaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaactt 216  Q
    | | ||||||||||||||||  |||||||||||||||||||| | ||||| ||||    
T  16831664 agatattgaatgcacaatttctaaaaataaatttttacatttagcttctatactt 16831718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 99 - 224
Target Start/End: Original strand, 47375800 - 47375924
Alignment:
Q  99 aagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaataaattttta 198  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||| ||| |||  |||||| |||||||||||||||||| ||||||||| ||| ||    
T  47375800 aagatctaaaaaaagaattaaaacataagttttgtattgaaaaa-taactttttaatctttcaagacattgaatgcacaatttccaaaaataagtttcta 47375898  T
Q  199 catttggtttctaaacttgtgtcttc 224  Q
    ||||||| ||||||||||||| ||||    
T  47375899 catttggattctaaacttgtgccttc 47375924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 30003898 - 30003785
Alignment:
Q  88 ggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaa 187  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||||||||||| ||||||| |||||||| || | ||||||| || ||||| |||||    
T  30003898 ggcacaagttaaaaatctaaaaaaagaattaaaacataaattttgtattgaaaaaataagtttttaactttttaagatattgaatacataatttccaaaa 30003799  T
Q  188 ataaatttttacat 201  Q
    |||||||| |||||    
T  30003798 ataaatttctacat 30003785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 96 - 247
Target Start/End: Original strand, 21212671 - 21212816
Alignment:
Q  96 ttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaataaattt 195  Q
    |||| |||||||||||  ||||||||| ||| | ||||||||||||| ||||||| |||||||||||||||||||||| | ||||||||||||||| |||    
T  21212671 ttaaggatctaaaaaa--aattaaaacgtaaatattgtattgaaaaaataagtttttaacttttcaaaacattgaatgtataattttcaaaaataagttt 21212768  T
Q  196 ttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcattt 247  Q
    |||||||||   | ||||||||||    ||||||||||| |||||| |||||    
T  21212769 ttacatttgacatttaaacttgtg----ccttaagggcataagttaacattt 21212816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 65 - 244
Target Start/End: Original strand, 12879649 - 12879825
Alignment:
Q  65 gtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaa 164  Q
    |||||||||||||||| || || |||| ||||||| ||||||| ||| |||||||||||||||||||||||| ||||| ||| ||  |||  |||||| |    
T  12879649 gtcatgctaacttgtgcccaaatggcataagttaaggatctaacaaaagaattaaaacataagttttgtattaaaaaaataaattgttaaactttcaaga 12879748  T
Q  165 cattgaatgcacaattttcaaaaataaatttt-tacatttggtttctaaacttgtgtcttccttaagggcacaagttagca 244  Q
    |||| |||||||||||| ||| | |||||||| |||||||   ||| |||||||||||||    ||||| |||||||||||    
T  12879749 cattaaatgcacaatttccaagattaaattttctacatttaacttccaaacttgtgtctt----aagggtacaagttagca 12879825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 215
Target Start/End: Complemental strand, 39511307 - 39511188
Alignment:
Q  96 ttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaataaattt 195  Q
    ||||| || ||||||  ||| |||||||||||||||||||| ||||  ||| |||  |||||||||| ||||||||||||||||||  |||||||| |||    
T  39511307 ttaaatatttaaaaagagaaataaaacataagttttgtattaaaaatataaattttcaacttttcaagacattgaatgcacaatttctaaaaataagttt 39511208  T
Q  196 ttacatttggtttctaaact 215  Q
    |||||| ||| |||||||||    
T  39511207 ttacatctggcttctaaact 39511188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 131
Target Start/End: Original strand, 42244391 - 42244460
Alignment:
Q  62 tgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagtttt 131  Q
    ||||||||  ||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||    
T  42244391 tgggtcatattaacttgtgtcctaagggcacaagttaagaatctaaaaaaagaattaaaacataagtttt 42244460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 20011385 - 20011227
Alignment:
Q  62 tgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttca 161  Q
    ||||||||| ||||||||| ||||||||||||||||||  | |||||||  |||||||||  ||| ||||||||| |||||   | |||  ||||||| |    
T  20011385 tgggtcatgttaacttgtgccctaagggcacaagttaagaaactaaaaattgaattaaaaagtaacttttgtatt-aaaaagacaatttaaaactttt-a 20011288  T
Q  162 aaacattgaatgcacaattttcaaaaataaa-tttttacatttggtttctaaacttgtgtc 221  Q
    | || |||||||||||||||||||||| ||| ||||||  ||| | || ||||||||||||    
T  20011287 atacgttgaatgcacaattttcaaaaaaaaagtttttaagtttagcttttaaacttgtgtc 20011227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 213
Target Start/End: Complemental strand, 38850673 - 38850519
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaa-----aacataagttttgtattgaaaaactaagtttgtaactt 157  Q
    ||||| || ||||||||| |||||||| |||| ||||  ||||||||||  ||||||     ||||||| |||| |||| ||||| ||||||| |||  |    
T  38850673 gggtcctgttaacttgtgccctaagggtacaaattaagaatctaaaaaagaaattaagattaaacataatttttatattaaaaaa-taagtttttaaact 38850575  T
Q  158 ttcaaaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaa 213  Q
    ||||||||||||||||||||||||| || |  |||||| ||||||||  |||||||    
T  38850574 ttcaaaacattgaatgcacaatttttaacataaaatttctacatttgacttctaaa 38850519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 18700106 - 18700028
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaa 141  Q
    |||||||| ||||||||| |||| |||||||||||||  | |||||||  |||||||||  ||| ||||||||||||||    
T  18700106 gggtcatgttaacttgtgccctaggggcacaagttaagaaactaaaaatggaattaaaaagtaacttttgtattgaaaa 18700028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 141
Target Start/End: Original strand, 27390150 - 27390228
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaa 141  Q
    |||||||| |||||||||  || ||||||||||||||| | ||||||||  || ||| | |||| ||||||||||||||    
T  27390150 gggtcatgttaacttgtgctcttagggcacaagttaaacaactaaaaaagaaaataataaataaattttgtattgaaaa 27390228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 99
Target Start/End: Complemental strand, 32786962 - 32786924
Alignment:
Q  61 atgggtcatgctaacttgtgtcctaagggcacaagttaa 99  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  32786962 atgggtcatgctaacttgtgccctaagggcacatgttaa 32786924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 33645162 - 33645200
Alignment:
Q  62 tgggtcatgctaacttgtgtcctaagggcacaagttaaa 100  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  33645162 tgggtcatgctaacttgtgacctaagggcacatgttaaa 33645200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 32948384 - 32948311
Alignment:
Q  86 agggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaactttt 159  Q
    |||||||||| |||||||||||||   ||||||||| |||| | ||| ||||||||| ||| ||||||| ||||    
T  32948384 agggcacaagataaagatctaaaagtggaattaaaaaataaatattgcattgaaaaaataattttgtaagtttt 32948311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 41894652 - 41894724
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtat 135  Q
    ||||| || ||||||||||||| |||||||||||||| || ||| |||| ||| ||||  |||| ||||||||    
T  41894652 gggtcttgttaacttgtgtccttagggcacaagttaaggaactataaaaggaaataaacaataaattttgtat 41894724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 86 - 247
Target Start/End: Complemental strand, 34462879 - 34462722
Alignment:
Q  86 agggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaa 185  Q
    |||||||||||||| | | ||||||| |||||||||||||| ||||||||||||||  |||||||  ||| |||||| ||||||||||||||||||||||    
T  34462879 agggcacaagttaaggttttaaaaaaagaattaaaacataacttttgtattgaaaatataagttttcaacctttcaagacattgaatgcacaattttcaa 34462780  T
Q  186 aaataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcattt 247  Q
    |||||||||| ||||||||  ||||||||||||||    ||||||||||||||||| |||||    
T  34462779 aaataaatttctacatttgacttctaaacttgtgt----cttaagggcacaagttaacattt 34462722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 113 - 249
Target Start/End: Complemental strand, 18919388 - 18919256
Alignment:
Q  113 gaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaa 212  Q
    ||||||||||| || ||||||||||||||  ||| ||| |||| |||||| |||||||||||||||||||||||||||| ||| ||||||||| || |||    
T  18919388 gaattaaaacaaaacttttgtattgaaaatataaatttttaacctttcaagacattgaatgcacaattttcaaaaataagtttctacatttggcttataa 18919289  T
Q  213 acttgtgtcttccttaagggcacaagttagcatttcc 249  Q
    |||||||    |||||||||||||||||| |||||||    
T  18919288 acttgtg----ccttaagggcacaagttaacatttcc 18919256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 219
Target Start/End: Original strand, 1640152 - 1640308
Alignment:
Q  60 tatgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaactttt 159  Q
    ||||||||||| ||||||||| | ||||| || ||||||| ||| |||||||  |||||||| | ||  |||||||||||||| ||||||| |||  |||    
T  1640152 tatgggtcatggtaacttgtgccttaagg-caaaagttaaggatgtaaaaaagaaattaaaataaaa--tttgtattgaaaaaataagtttttaaacttt 1640248  T
Q  160 caaaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaacttgtg 219  Q
    ||| ||||||||||||||||||| |||| ||| ||| |||||||   |||||||||||||    
T  1640249 caagacattgaatgcacaatttttaaaattaagtttctacatttaacttctaaacttgtg 1640308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 101 - 205
Target Start/End: Original strand, 40619520 - 40619624
Alignment:
Q  101 gatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaataaatttttaca 200  Q
    ||||||||||| |||||||||||||| ||||||||| ||||| ||| ||| |||  ||| || | |||||||||||||||||||||| ||| ||||||||    
T  40619520 gatctaaaaaaggaattaaaacataatttttgtattaaaaaaataaatttttaaacttttaagatattgaatgcacaattttcaaaattaagtttttaca 40619619  T
Q  201 tttgg 205  Q
    |||||    
T  40619620 tttgg 40619624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 250
Target Start/End: Complemental strand, 37705473 - 37705310
Alignment:
Q  83 ctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaatttt 182  Q
    ||||||||||||||||| ||| | ||||| |||| || | |||| |||||||||| |||| |||| || |||  |||||||||||||||||||  |||||    
T  37705473 ctaagggcacaagttaatgattttaaaaaagaataaacatataaattttgtattggaaaaataagattttaatctttcaaaacattgaatgcattatttt 37705374  T
Q  183 caaaaataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcatttccc 250  Q
     |||| | | ||| ||||||||  ||||||||||||||    ||||||| ||||||||| ||||||||    
T  37705373 taaaatttagtttctacatttgacttctaaacttgtgt----cttaaggacacaagttaacatttccc 37705310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 141
Target Start/End: Original strand, 45948871 - 45948952
Alignment:
Q  60 tatgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaa 141  Q
    ||||||||||| |||||||| |||||||||||||||||||  | |||||||  |||||||||  ||| ||||||||||||||    
T  45948871 tatgggtcatgttaacttgtttcctaagggcacaagttaagaaactaaaaatggaattaaaaagtaaattttgtattgaaaa 45948952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 24439145 - 24439242
Alignment:
Q  113 gaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaataaatttttacatttggtttct 210  Q
    ||||||||| |||| | ||||||| ||||| ||||||| |||  ||| || |   |||||||||||||||||||| ||||||||||||||| ||||||    
T  24439145 gaattaaaaaataaatattgtattaaaaaaataagtttttaaacttttaagattatgaatgcacaattttcaaaattaaatttttacatttagtttct 24439242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 250
Target Start/End: Complemental strand, 51540836 - 51540670
Alignment:
Q  87 gggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattga-aaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaa 185  Q
    ||||||||||||| ||||||||||  ||||||||||||||||||||  || | ||||  || |||  ||||||| |||| | ||||| |||||||| |||    
T  51540836 gggcacaagttaatgatctaaaaatggaattaaaacataagttttgacttaacaaaataaaattttaaactttttaaaataatgaatacacaatttccaa 51540737  T
Q  186 aaataaatttttacatttggtttctaaacttgtg--tcttccttaagggcacaagttagcatttccc 250  Q
     | ||  ||| || |||||| |||| ||||||||  | | |||||||| | ||||||||||||||||    
T  51540736 gattatgtttctatatttggcttcttaacttgtgtttgtgccttaaggtctcaagttagcatttccc 51540670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 188
Target Start/End: Complemental strand, 2144661 - 2144576
Alignment:
Q  105 taaaaaacgaattaa--aacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaa 188  Q
    ||||||| |||||||  || |||| ||||||||  ||||| ||| | | ||| |||||||||||||||||||||||||||||||||    
T  2144661 taaaaaatgaattaagaaatataaattttgtatcaaaaaaataaatatctaaattttcaaaacattgaatgcacaattttcaaaaa 2144576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 141
Target Start/End: Original strand, 30512558 - 30512636
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaa 141  Q
    ||||||||||||||| |||||||||  ||||||||||  || ||||||| ||| ||||| |||| | ||||||||||||    
T  30512558 gggtcatgctaacttatgtcctaagtacacaagttaagaatttaaaaaaggaaataaaaaataaatattgtattgaaaa 30512636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 34967803 - 34967721
Alignment:
Q  59 ttatgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaa 141  Q
    |||||||||||| ||||||||| |||  |||||||||||||  | |||||||  ||||||||| |||| ||||| ||||||||    
T  34967803 ttatgggtcatgttaacttgtgcccttggggcacaagttaagaaactaaaaatagaattaaaagataacttttgcattgaaaa 34967721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 223
Target Start/End: Original strand, 8301697 - 8301818
Alignment:
Q  102 atctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaataaatttttacat 201  Q
    |||||||||| ||| ||||||||||  ||| |||||||||  ||| ||| |||| |||   |  ||||||||||||||||| |||| ||| ||| |||||    
T  8301697 atctaaaaaaagaagtaaaacataaactttctattgaaaatataactttttaacctttacgattattgaatgcacaatttttaaaattaagtttctacat 8301796  T
Q  202 ttggtttctaaacttgtgtctt 223  Q
    ||| ||| | ||||||||||||    
T  8301797 ttgattttttaacttgtgtctt 8301818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 181
Target Start/End: Original strand, 47853508 - 47853591
Alignment:
Q  101 gatctaaaaaacgaattaaaacataagttt--tgtattg-aaaaactaagtttgtaacttttcaaaacattgaatgcacaattt 181  Q
    ||||||||||| ||||||||||||||||||  ||||||| ||||| ||| ||| |||  ||||||||||||  |||||||||||    
T  47853508 gatctaaaaaaggaattaaaacataagttttgtgtattgaaaaaaataaatttttaaactttcaaaacattatatgcacaattt 47853591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 203
Target Start/End: Original strand, 28924126 - 28924161
Alignment:
Q  168 tgaatgcacaattttcaaaaataaatttttacattt 203  Q
    |||||||||||||||||||| |||||||||||||||    
T  28924126 tgaatgcacaattttcaaaattaaatttttacattt 28924161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 1607398 - 1607354
Alignment:
Q  166 attgaatgcacaattttcaaaaataaatttttacatttggtttct 210  Q
    |||||||||||||||||||||  ||||||| ||||||| ||||||    
T  1607398 attgaatgcacaattttcaaagttaaatttctacatttagtttct 1607354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 103
Target Start/End: Original strand, 1780508 - 1780548
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaaagat 103  Q
    ||||| |||||||||||| |||||||||||| |||||||||    
T  1780508 gggtcttgctaacttgtgccctaagggcacatgttaaagat 1780548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 99
Target Start/End: Complemental strand, 16394995 - 16394959
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaa 99  Q
    ||||||||||||||| |||| ||||||||||||||||    
T  16394995 gggtcatgctaacttatgtcataagggcacaagttaa 16394959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 26758538 - 26758486
Alignment:
Q  164 acattgaatgcacaattttcaaaaataaatttttacatttggtttctaaactt 216  Q
    ||||||||||||||||||||||||| | |||| || |||||| |||| |||||    
T  26758538 acattgaatgcacaattttcaaaaaaacatttatatatttggcttcttaactt 26758486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 30058527 - 30058471
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaa 119  Q
    |||||||| ||||||||  ||||||||||||||||||||| || ||||  |||||||    
T  30058527 gggtcatgttaacttgtaccctaagggcacaagttaaagaacttaaaatagaattaa 30058471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 8e-39; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 62 - 219
Target Start/End: Complemental strand, 7637756 - 7637600
Alignment:
Q  62 tgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttca 161  Q
    ||||||||||||| ||||| |||||  |||||||| |||||| |||||||  ||||| |||| |||||||||||||||||| ||||||||||||||||||    
T  7637756 tgggtcatgctaatttgtgccctaaaagcacaagtcaaagat-taaaaaaaaaattagaacacaagttttgtattgaaaaaataagtttgtaacttttca 7637658  T
Q  162 aaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaacttgtg 219  Q
    | ||||||||||||||||||||||||  ||| || ||||||||  |||||||||||||    
T  7637657 agacattgaatgcacaattttcaaaagaaaaattctacatttgacttctaaacttgtg 7637600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 61 - 250
Target Start/End: Original strand, 18181666 - 18181850
Alignment:
Q  61 atgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttc 160  Q
    |||||||||  ||||||||||||||||||||||||||||  ||||||||||  ||||||| ||||| |||| |||| ||||| ||||||| ||| ||||     
T  18181666 atgggtcatattaacttgtgtcctaagggcacaagttaagaatctaaaaaaa-aattaaagcataaattttatatttaaaaaataagtttttaatttttt 18181764  T
Q  161 aaaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcatttccc 250  Q
    || ||||||||||||||||||||||||| || ||| ||||||||| |  |||| || ||    |||||||||||||||||||||||||||    
T  18181765 aagacattgaatgcacaattttcaaaaacaagtttctacatttggctattaaatttatg----ccttaagggcacaagttagcatttccc 18181850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 250
Target Start/End: Complemental strand, 7042730 - 7042570
Alignment:
Q  86 agggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaa 185  Q
    |||||||||||||| ||| ||||| | |||||||| ||| ||||||||||||||||| ||||||| ||| ||||||||||||| |||||||  ||| |||    
T  7042730 agggcacaagttaaggatttaaaagaagaattaaatcatgagttttgtattgaaaaaataagtttttaatttttcaaaacatttaatgcacgttttccaa 7042631  T
Q  186 aaataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcatttccc 250  Q
    |||||| ||| |||| ||  ||||||||||||||    |||| ||||||||||||| ||||||||    
T  7042630 aaataagtttctacaattaatttctaaacttgtg----ccttgagggcacaagttaacatttccc 7042570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 198
Target Start/End: Original strand, 114088 - 114224
Alignment:
Q  62 tgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttca 161  Q
    |||||||||||||||| |  |||||||||| |||||||  |||||||| | |||||||||||||||||||||||||||||| ||| ||| |||  |||||    
T  114088 tgggtcatgctaacttataccctaagggcaaaagttaagaatctaaaagaagaattaaaacataagttttgtattgaaaaaataaatttttaaactttca 114187  T
Q  162 aaacattgaatgcacaattttcaaaaataaattttta 198  Q
    |||||||||||| || | || ||||| ||| ||||||    
T  114188 aaacattgaatgtacgacttccaaaattaagttttta 114224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 219
Target Start/End: Complemental strand, 39699556 - 39699442
Alignment:
Q  106 aaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaac-ttttcaaaacattgaatgcacaattttcaaaaataaatttttacatttg 204  Q
    |||||| |||||||| | ||||||||| ||||||||| |||||||||||| ||||||| ||||| |||| ||||||||||||||||||||  ||||||||    
T  39699556 aaaaaaagaattaaaccttaagttttgaattgaaaaaataagtttgtaacgttttcaagacattaaatgtacaattttcaaaaataaattactacatttg 39699457  T
Q  205 gtttctaaacttgtg 219  Q
      ||||||| |||||    
T  39699456 acttctaaatttgtg 39699442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 223
Target Start/End: Original strand, 43108600 - 43108760
Alignment:
Q  61 atgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttc 160  Q
    |||||| ||| ||||||||||| |||||| ||||||||| |||  || |||  |||||||| |||| ||||||||||||||| ||||||| |||  ||||    
T  43108600 atgggttatgttaacttgtgtcttaagggtacaagttaatgataaaataaat-aattaaaatataaattttgtattgaaaaa-taagtttttaaactttc 43108697  T
Q  161 aaaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaacttgtgtctt 223  Q
    || | ||| |||||||||||||||||| ||| |||||| ||| || |||||||||||| ||||    
T  43108698 aagatattaaatgcacaattttcaaaattaagtttttatattcggcttctaaacttgtatctt 43108760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 43351941 - 43352018
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaa 140  Q
    |||||||||||||||||| ||||||||||||||||||  | |||||||| ||| ||| | |||| |||||||||||||    
T  43351941 gggtcatgctaacttgtgccctaagggcacaagttaagaaactaaaaaaggaaataataaataaattttgtattgaaa 43352018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 137
Target Start/End: Complemental strand, 9399702 - 9399623
Alignment:
Q  58 attatgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattg 137  Q
    ||||||||||||| ||||||||| ||| ||||||||||||||||| |||||||| ||| ||| | |||| |||| |||||    
T  9399702 attatgggtcatgttaacttgtgcccttagggcacaagttaaagagctaaaaaaggaaataataaataaattttatattg 9399623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 44813944 - 44814022
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaa 142  Q
    |||||||||||||||||| ||| |    ||||||||||||||||||||| ||||||||| |||||||||||||| |||||    
T  44813944 gggtcatgctaacttgtgcccttacaaaacaagttaaagatctaaaaaa-gaattaaaagataagttttgtattaaaaaa 44814022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 374337 - 374374
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaaa 100  Q
    |||||||||||||||||||||| |||||||| ||||||    
T  374337 gggtcatgctaacttgtgtccttagggcacatgttaaa 374374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 72; Significance: 7e-33; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 72 - 195
Target Start/End: Original strand, 39625066 - 39625189
Alignment:
Q  72 taacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaa 171  Q
    |||||| || || ||||| ||||||||| ||||||||||| |||||||||||||| ||||||||| ||||| |||| || ||||||||||| ||||| ||    
T  39625066 taacttatgccccaaggggacaagttaaggatctaaaaaaagaattaaaacataaattttgtattcaaaaaataagattttaacttttcaagacattaaa 39625165  T
Q  172 tgcacaattttcaaaaataaattt 195  Q
    ||||||||||||||||||||||||    
T  39625166 tgcacaattttcaaaaataaattt 39625189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 219
Target Start/End: Original strand, 39956153 - 39956267
Alignment:
Q  104 ctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttcaaaaataaatttttacattt 203  Q
    |||||||  ||| |||||||||| |||| |||||||||  ||||||| ||||||||||  |||||||||||||||||||||||||||||||| ||| |||    
T  39956153 ctaaaaagagaaataaaacataaattttatattgaaaatataagtttttaacttttcatgacattgaatgcacaattttcaaaaataaatttctac-ttt 39956251  T
Q  204 ggtttctaaacttgtg 219  Q
    || |||||||||||||    
T  39956252 ggcttctaaacttgtg 39956267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 11076901 - 11077014
Alignment:
Q  68 atgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacat 167  Q
    ||||||||||||||| | | ||||||||||||  |||||||||  |||||||||||||| |||||| |||||||  |||| || ||| |||  |||| ||    
T  11076901 atgctaacttgtgtcgttaaggcacaagttaagaatctaaaaatggaattaaaacataaattttgtcttgaaaatataagattttaaatttctaaaatat 11077000  T
Q  168 tgaatgcacaattt 181  Q
    ||| ||||||||||    
T  11077001 tgattgcacaattt 11077014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 64 - 142
Target Start/End: Complemental strand, 32024379 - 32024301
Alignment:
Q  64 ggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaac-gaattaaaacataagttttgtattgaaaaa 142  Q
    |||||||||||||||||||||||   |||||||||| ||| |||||||| ||||||||||||||||||||| || |||||    
T  32024379 ggtcatgctaacttgtgtcctaaaaacacaagttaaggat-taaaaaacagaattaaaacataagttttgttttaaaaaa 32024301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 188
Target Start/End: Complemental strand, 50129215 - 50129086
Alignment:
Q  60 tatgggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttg-tattgaaaa-actaagtttgtaactt 157  Q
    ||||||||||| ||||||||| ||| ||||||||||||||  | |||||||  ||||||||| |||| ||||| ||||||||| |  || |||  |||||    
T  50129215 tatgggtcatgttaacttgtgcccttagggcacaagttaagaaactaaaaatggaattaaaaaataacttttgttattgaaaagataaaatttcaaactt 50129116  T
Q  158 ttcaaaacattgaatgcacaattttcaaaaa 188  Q
    || || | |||||||||||||||||||||||    
T  50129115 tt-aatatattgaatgcacaattttcaaaaa 50129086  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 182
Target Start/End: Original strand, 5050551 - 5050669
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaa-actaagtttgtaacttttca 161  Q
    |||||||| ||||||||| ||||| ||||||||||||| | |||||||  |||||||||  ||| |||||||||||||| || || ||| ||| |||| |    
T  5050551 gggtcatgttaacttgtg-cctaaaggcacaagttaaaaaactaaaaatggaattaaaatgtaacttttgtattgaaaagacaaaattt-taaattttta 5050648  T
Q  162 aaacattgaatgcacaatttt 182  Q
    | | |||||||||||||||||    
T  5050649 atatattgaatgcacaatttt 5050669  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 250
Target Start/End: Original strand, 50170444 - 50170633
Alignment:
Q  59 ttatgggtcatgctaacttgtgtcct--aagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaact 156  Q
    |||||| ||||||||||||||| | |   |||||||||||||| || || ||||  ||| ||||| |||| |||| |||||||||  ||| |||  || |    
T  50170444 ttatggatcatgctaacttgtgcctttatagggcacaagttaaggagcttaaaatagaa-taaaaaataaattttatattgaaaagataacttttgaaat 50170542  T
Q  157 tttcaaaacattgaatgcacaattttcaa-aaataaatttttacatttggtttctaaacttgtgtcttccttaagggcacaagttagcatttccc 250  Q
    ||| || |||||||||||||||||| ||| ||| ||| || |||||||||||||| ||||| ||    ||  |||||||||||||| ||||||||    
T  50170543 ttttaagacattgaatgcacaatttccaagaaaaaaacttctacatttggtttcttaacttatg----ccccaagggcacaagttaacatttccc 50170633  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 219
Target Start/End: Original strand, 41242157 - 41242292
Alignment:
Q  84 taagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacattgaatgcacaattttc 183  Q
    ||||||||||||||||| |||||||||  |||||||| ||||| || |||  ||||||  |||| ||  || |||  |||| ||| |||||||||||| |    
T  41242157 taagggcacaagttaaaaatctaaaaatagaattaaatcataaattatgtcctgaaaagataagatttcaaatttctaaaatattaaatgcacaatttcc 41242256  T
Q  184 aaaaataaatttttacatttggtttctaaacttgtg 219  Q
    || || |  ||||||  |||||||||| ||||||||    
T  41242257 aacaaaatgtttttatctttggtttcttaacttgtg 41242292  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 100
Target Start/End: Complemental strand, 34408202 - 34408161
Alignment:
Q  59 ttatgggtcatgctaacttgtgtcctaagggcacaagttaaa 100  Q
    |||||||||||| |||||||||||| ||||||||| ||||||    
T  34408202 ttatgggtcatgttaacttgtgtccaaagggcacatgttaaa 34408161  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 187
Target Start/End: Original strand, 45318207 - 45318288
Alignment:
Q  107 aaaaacgaattaaaacataagttttgtattgaaaa-actaagtttgtaacttttcaaaacattgaatgcacaattttcaaaa 187  Q
    ||||| |||||||||||||| ||||||||| |||| |  |||||| |||  |||||||| | ||||||||||||||| ||||    
T  45318207 aaaaaggaattaaaacataatttttgtattaaaaacaaaaagtttttaaactttcaaaataatgaatgcacaatttttaaaa 45318288  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 93
Target Start/End: Complemental strand, 45628480 - 45628451
Alignment:
Q  64 ggtcatgctaacttgtgtcctaagggcaca 93  Q
    ||||||||||||||||||||||||||||||    
T  45628480 ggtcatgctaacttgtgtcctaagggcaca 45628451  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 141
Target Start/End: Complemental strand, 50164134 - 50164065
Alignment:
Q  72 taacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaa 141  Q
    ||||||||| ||| |||||||||| ||| |||||||||   ||||||||| |||| | ||||||||||||    
T  50164134 taacttgtgcccttagggcacaagataaggatctaaaagtggaattaaaaaataaatgttgtattgaaaa 50164065  T

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Target: scaffold0024 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 63 - 216
Target Start/End: Original strand, 33153 - 33307
Alignment:
Q  63 gggtcatgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaa----aaactaagtttgtaacttt 158  Q
    |||||||| |||||||||   ||| |||||||||||| |||||||||||  |||   ||||||||| || || ||||    |||  |||||| |||| ||    
T  33153 gggtcatgttaacttgtgctttaaaggcacaagttaaggatctaaaaaagaaat---aacataagtgttctaatgaagaaaaaaaaaagtttttaacctt 33249  T
Q  159 tcaaaacattgaatgcacaattttcaaaaataaatttttacatttggtttctaaactt 216  Q
    ||||||||||||||||||||||||||||||| | || ||||||||   ||||||||||    
T  33250 tcaaaacattgaatgcacaattttcaaaaattagttattacatttaacttctaaactt 33307  T

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Target: scaffold0192 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 13535 - 13423
Alignment:
Q  69 tgctaacttgtgtcctaagggcacaagttaaagatctaaaaaacgaattaaaacataagttttgtattgaaaaactaagtttgtaacttttcaaaacatt 168  Q
    |||||||||||| ||||||||||||||||||  |||||||||   ||||||| ||||| || ||| |||||||  |||| || ||| |||  | || |||    
T  13535 tgctaacttgtgccctaagggcacaagttaagaatctaaaaatgcaattaaatcataaattatgtcttgaaaagataagattttaaatttctagaatatt 13436  T
Q  169 gaatgcacaattt 181  Q
    |||||||||||||    
T  13435 gaatgcacaattt 13423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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