View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5621-Insertion-2 (Length: 1040)

Name: NF5621-Insertion-2
Description: NF5621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5621-Insertion-2
NF5621-Insertion-2
[»] chr3 (10 HSPs)
chr3 (822-1040)||(10792223-10792443)
chr3 (824-1040)||(10778707-10778925)
chr3 (824-1040)||(11886989-11887202)
chr3 (822-987)||(14683391-14683557)
chr3 (824-947)||(7396498-7396621)
chr3 (822-947)||(7341752-7341877)
chr3 (824-877)||(13299820-13299873)
chr3 (824-873)||(10139507-10139556)
chr3 (824-877)||(13310478-13310531)
chr3 (822-873)||(10170872-10170923)
[»] chr1 (6 HSPs)
chr1 (824-1031)||(41383770-41383977)
chr1 (822-1031)||(41368863-41369072)
chr1 (822-877)||(22086122-22086177)
chr1 (824-877)||(27561642-27561695)
chr1 (824-882)||(31845986-31846044)
chr1 (824-877)||(22809398-22809450)
[»] chr8 (7 HSPs)
chr8 (822-1031)||(1735027-1735236)
chr8 (824-947)||(16668247-16668369)
chr8 (824-877)||(20193514-20193567)
chr8 (822-877)||(17426455-17426510)
chr8 (824-882)||(12821551-12821609)
chr8 (823-882)||(22352346-22352405)
chr8 (824-882)||(25389312-25389370)
[»] chr4 (7 HSPs)
chr4 (824-987)||(18108417-18108581)
chr4 (822-876)||(13277561-13277615)
chr4 (822-877)||(14714469-14714524)
chr4 (823-877)||(13292938-13292992)
chr4 (824-876)||(15154001-15154053)
chr4 (824-877)||(14776149-14776202)
chr4 (822-873)||(14557235-14557286)
[»] chr7 (8 HSPs)
chr7 (824-949)||(14346188-14346312)
chr7 (824-949)||(14036158-14036282)
chr7 (822-949)||(14323995-14324121)
chr7 (824-877)||(44278026-44278079)
chr7 (818-950)||(18115509-18115638)
chr7 (818-950)||(18142077-18142206)
chr7 (824-877)||(1978547-1978600)
chr7 (824-877)||(18175201-18175254)
[»] scaffold0516 (1 HSPs)
scaffold0516 (822-877)||(11448-11503)
[»] scaffold0740 (1 HSPs)
scaffold0740 (822-894)||(5351-5424)
[»] scaffold0130 (3 HSPs)
scaffold0130 (826-877)||(28870-28921)
scaffold0130 (824-877)||(39600-39653)
scaffold0130 (822-877)||(29674-29729)
[»] scaffold0108 (2 HSPs)
scaffold0108 (822-877)||(43932-43987)
scaffold0108 (824-877)||(22758-22811)
[»] scaffold0101 (2 HSPs)
scaffold0101 (822-877)||(46625-46680)
scaffold0101 (822-877)||(51263-51318)
[»] scaffold0064 (1 HSPs)
scaffold0064 (824-877)||(43492-43545)
[»] scaffold0022 (1 HSPs)
scaffold0022 (822-877)||(58237-58292)
[»] chr2 (8 HSPs)
chr2 (822-873)||(24954059-24954110)
chr2 (824-873)||(24967260-24967309)
chr2 (822-877)||(23190566-23190621)
chr2 (822-877)||(23611821-23611876)
chr2 (823-877)||(23204217-23204271)
chr2 (822-877)||(22648279-22648334)
chr2 (822-876)||(23615470-23615524)
chr2 (824-877)||(22633528-22633581)
[»] scaffold0304 (1 HSPs)
scaffold0304 (822-876)||(6127-6181)
[»] chr6 (6 HSPs)
chr6 (822-877)||(19025725-19025780)
chr6 (823-877)||(23431670-23431724)
chr6 (823-877)||(23496283-23496337)
chr6 (824-877)||(19038768-19038821)
chr6 (822-877)||(16209539-16209594)
chr6 (824-877)||(30755861-30755914)
[»] scaffold0270 (1 HSPs)
scaffold0270 (823-876)||(15555-15608)
[»] scaffold0026 (2 HSPs)
scaffold0026 (822-882)||(118634-118694)
scaffold0026 (824-882)||(142546-142604)
[»] scaffold0001 (2 HSPs)
scaffold0001 (822-882)||(389832-389892)
scaffold0001 (822-864)||(115696-115738)
[»] chr5 (5 HSPs)
chr5 (822-882)||(21530042-21530102)
chr5 (824-882)||(21504377-21504435)
chr5 (824-882)||(21982942-21983000)
chr5 (824-882)||(26274425-26274483)
chr5 (824-882)||(20506647-20506705)
[»] scaffold0358 (1 HSPs)
scaffold0358 (822-877)||(15458-15513)
[»] scaffold0323 (1 HSPs)
scaffold0323 (822-873)||(4250-4301)
[»] scaffold0021 (2 HSPs)
scaffold0021 (823-882)||(18830-18889)
scaffold0021 (823-882)||(28361-28420)
[»] scaffold0169 (1 HSPs)
scaffold0169 (823-876)||(35594-35647)
[»] scaffold0080 (1 HSPs)
scaffold0080 (824-877)||(2172-2225)
[»] scaffold0005 (1 HSPs)
scaffold0005 (824-877)||(63528-63581)
[»] scaffold0241 (1 HSPs)
scaffold0241 (822-882)||(24821-24881)
[»] scaffold0193 (1 HSPs)
scaffold0193 (822-877)||(27112-27167)
[»] scaffold0107 (1 HSPs)
scaffold0107 (822-877)||(28863-28918)
[»] scaffold0081 (1 HSPs)
scaffold0081 (822-877)||(44597-44652)
[»] scaffold0282 (1 HSPs)
scaffold0282 (824-877)||(9093-9145)


Alignment Details
Target: chr3 (Bit Score: 170; Significance: 1e-90; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 170; E-Value: 1e-90
Query Start/End: Original strand, 822 - 1040
Target Start/End: Original strand, 10792223 - 10792443
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaga-tgaggcgtagctatgcggatggaattcatcgaaaagga 920  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || ||||||||||||||||||||||    
T  10792223 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaaaatgaggcgtagctttgtggatggaattcatcgaaaagga 10792322  T
Q  921 tataaatctacttcagcaggaatcgaagaat-agtttttgttcgacgagtaaaggaagttgtcgacgcaccttccaagtatttggataggagccaagcgg 1019  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||    
T  10792323 tataaatctacttcagcaggaatcgaagaataagtttttgttcgacgagtaaaggaagttgtcgacgcgccttccaagtttttggata-gagccaagcgg 10792421  T
Q  1020 ttagcaaacggc-agttttcga 1040  Q
    |||||||||||| |||||||||    
T  10792422 ttagcaaacggctagttttcga 10792443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 4e-87
Query Start/End: Original strand, 824 - 1040
Target Start/End: Original strand, 10778707 - 10778925
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaga-tgaggcgtagctatgcggatggaattcatcgaaaaggata 922  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| || ||||||||||||||||||||||||    
T  10778707 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaaaatgaggcgtagctttgtggatggaattcatcgaaaaggata 10778806  T
Q  923 taaatctacttcagcaggaatcgaagaat-agtttttgttcgacgagtaaaggaagttgtcgacgcaccttccaagtatttggataggagccaagcggtt 1021  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||    
T  10778807 taaatctacttcagcaggaatcgaagaataagtttttgttcaacgagtaaaggaagttgtcgacgcgccttccaagtttttggata-gagccaagcggtt 10778905  T
Q  1022 agcaaacggc-agttttcga 1040  Q
    |||||||||| |||||||||    
T  10778906 agcaaacggctagttttcga 10778925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 824 - 1040
Target Start/End: Original strand, 11886989 - 11887202
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc-aaagatgaggcgtagctatgcggatggaattcatcgaaaaggata 922  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||| |  ||||||||||||||||||   |||    
T  11886989 tgttagccaatatttgtgaaaatataatcatttaatgcagtcaagggtttgacctaaagatggggcgtagctttagggatggaattcatcgaaa---ata 11887085  T
Q  923 taaatctacttcagcaggaatcgaagaatagtttttgttcgacgagtaaaggaagttgtcgacgcaccttccaagtatttggataggagccaagcggtta 1022  Q
     |||||||||||||||||||||||||||||| |||| ||||||  || ||||||||||||||||| |||||||||| ||||||||  |||||||||||||    
T  11887086 caaatctacttcagcaggaatcgaagaataggtttt-ttcgacaggttaaggaagttgtcgacgcgccttccaagtttttggata-aagccaagcggtta 11887183  T
Q  1023 gcaaacggc-agttttcga 1040  Q
    ||||||||| |||||||||    
T  11887184 gcaaacggctagttttcga 11887202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 822 - 987
Target Start/End: Complemental strand, 14683557 - 14683391
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc-aaagatgaggcgtagctatgcggatggaattcatcgaaaagga 920  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||  ||||||| ||| ||| ||||||||| || | | | ||| |||||||||  |    
T  14683557 tttgttagccaatttttgtgagaatatgatcatttaatgcagtcaagcatttgacctaaaaatggggcgtagctttgtgaaagaaatccatcgaaaa--a 14683460  T
Q  921 tataaatctacttcagcaggaatcgaagaa-tagttttt-gttcgacgagtaaaggaagttgtcgacgc 987  Q
    || || | ||||||||||||||| |||||| | |||||| ||||||||  |||| ||||||||||||||    
T  14683459 tacaagtgtacttcagcaggaattgaagaagttgtttttagttcgacggataaaagaagttgtcgacgc 14683391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 824 - 947
Target Start/End: Complemental strand, 7396621 - 7396498
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaa-gggtttgacc-aaagatgaggcgtagctatgcggatggaattcatcgaaaaggat 921  Q
    ||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| ||||||| |||| || | || | |  |||| |||||||||  ||    
T  7396621 tgttagccaatatttgtgagaatatgagcatttaatgcagtcaaggggtttgaccgaaagatggggcgaagttttgggaaaagaatccatcgaaaa--at 7396524  T
Q  922 ataaatctacttcagcaggaatcgaa 947  Q
    | |||| |||||||||||||||||||    
T  7396523 acaaatgtacttcagcaggaatcgaa 7396498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 822 - 947
Target Start/End: Complemental strand, 7341877 - 7341752
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaa-gggtttgacc-aaagatgaggcgtagctatgcggatggaattcatcgaaaagg 919  Q
    ||||||||||||||||||||| ||| ||| |||||||||||||||| |||||||||| ||||||| |||| || | || | |  |||| |||||||||      
T  7341877 tttgttagccaatatttgtgagaatttgagcatttaatgcagtcaaggggtttgaccgaaagatggggcgaagttttgggaaaagaatccatcgaaaa-- 7341780  T
Q  920 atataaatctacttcagcaggaatcgaa 947  Q
    ||| |||| |||||||||||||||||||    
T  7341779 atacaaatgtacttcagcaggaatcgaa 7341752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 824 - 877
Target Start/End: Complemental strand, 13299873 - 13299820
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||| |||||||||| ||||  ||||||||||||||||||||||||||||    
T  13299873 tgttagccgatatttgtgagaatagtatcatttaatgcagtcaagggtttgacc 13299820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 824 - 873
Target Start/End: Original strand, 10139507 - 10139556
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggttt 873  Q
    |||||||||||||||||||||||   |||||||||||||||||| |||||    
T  10139507 tgttagccaatatttgtgaaaatgctatcatttaatgcagtcaaaggttt 10139556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 824 - 877
Target Start/End: Complemental strand, 13310531 - 13310478
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||| |||||||||| ||||  |||||||||||| |||||||||||||||    
T  13310531 tgttagccgatatttgtgagaatagtatcatttaatgctgtcaagggtttgacc 13310478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 822 - 873
Target Start/End: Original strand, 10170872 - 10170923
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggttt 873  Q
    |||||||||| ||||||||||||||   |||||||||||||||||| |||||    
T  10170872 tttgttagccgatatttgtgaaaatgctatcatttaatgcagtcaaaggttt 10170923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 108; Significance: 1e-53; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 824 - 1031
Target Start/End: Complemental strand, 41383977 - 41383770
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc-aaagatgaggcgtagctatgcggatggaattcatcgaaaaggata 922  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| || |||  |||| |||||||||  |||    
T  41383977 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacctaaaaatggggcgtagctttgtggaaagaatccatcgaaaa--ata 41383880  T
Q  923 taaatctacttcagcaggaatcgaagaata-gtttttgttcgacgagtaaaggaagttgtcgacgcaccttccaag-tatttggataggagccaagcggt 1020  Q
     |||||||||||||||||||||||||| || |||||||||||||  |||||||||||||||||||| ||||||||| | |||||||| | ||||| ||||    
T  41383879 caaatctacttcagcaggaatcgaagagtaggtttttgttcgacaggtaaaggaagttgtcgacgcgccttccaagttttttggataag-gccaaacggt 41383781  T
Q  1021 tagcaaacggc 1031  Q
    |||||||||||    
T  41383780 tagcaaacggc 41383770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 822 - 1031
Target Start/End: Complemental strand, 41369072 - 41368863
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc-aaagatgaggcgtagctatgcggatggaattcatcgaaaagga 920  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||| || |||  |||| |||||||||  |    
T  41369072 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacctaaaaatggggcgtagctttgtggaaagaatccatcgaaaa--a 41368975  T
Q  921 tataaatctacttcagcaggaatcgaagaata-gtttttgttcgacgagtaaaggaagttgtcgacgcaccttccaag-tatttggataggagccaagcg 1018  Q
    || ||||||||||||||| |||||||||| || |||||||||||||  |||||||||||||||||||| ||||||||| | |||||||| | ||||| ||    
T  41368974 tacaaatctacttcagcatgaatcgaagagtaggtttttgttcgacaggtaaaggaagttgtcgacgcgccttccaagttttttggataag-gccaaacg 41368876  T
Q  1019 gttagcaaacggc 1031  Q
    |||||||||||||    
T  41368875 gttagcaaacggc 41368863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 822 - 877
Target Start/End: Original strand, 22086122 - 22086177
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  22086122 tttgttagtcaatatttgtgagaatatgatcatttaatgcagtcaagggtttgacc 22086177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 824 - 877
Target Start/End: Original strand, 27561642 - 27561695
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||| ||||||||||||||   ||||||||||||||||||||||||||||    
T  27561642 tgttagccgatatttgtgaaaatgctatcatttaatgcagtcaagggtttgacc 27561695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 824 - 882
Target Start/End: Complemental strand, 31846044 - 31845986
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaga 882  Q
    ||||||||||||||||||||||    |||||| ||| ||||||||||||||||| ||||    
T  31846044 tgttagccaatatttgtgaaaaggatatcattcaatacagtcaagggtttgacctaaga 31845986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 824 - 877
Target Start/End: Complemental strand, 22809450 - 22809398
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||| |||||||||||||  | |||||||||||||||||| |||||||||    
T  22809450 tgttagccgatatttgtgaaaaagt-atcatttaatgcagtcaaaggtttgacc 22809398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 102; Significance: 4e-50; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 822 - 1031
Target Start/End: Original strand, 1735027 - 1735236
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc-aaagatgaggcgtagctatgcggatggaattcatcgaaaagga 920  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||  |||||||| || |||  |||| |||||||||  |    
T  1735027 tttgttagccaatatttgtaaaaatatgatcatttaatgcagtcaagggtttgaccaaaaaatggagcgtagctttgtggacagaatccatcgaaaa--a 1735124  T
Q  921 tataaatctacttcagcaggaatcgaagaat-agtttttgttcgacgagtaaaggaagttgtcgacgcaccttccaag-tatttggataggagccaagcg 1018  Q
    || ||||||||||||| |||||||||||| |  ||||||||||||| ||||||||||||||||||||| ||||||||| | |||||||| | ||||||||    
T  1735125 tacaaatctacttcagaaggaatcgaagagtgggtttttgttcgacaagtaaaggaagttgtcgacgcgccttccaagttttttggataag-gccaagcg 1735223  T
Q  1019 gttagcaaacggc 1031  Q
    |||||||||||||    
T  1735224 gttagcaaacggc 1735236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 824 - 947
Target Start/End: Complemental strand, 16668369 - 16668247
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc-aaagatgaggcgtagctatgcggatggaattcatcgaaaaggata 922  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||| |||| || | | | ||| |||||||||  |||    
T  16668369 tgttagccaatatttgtgagaatatgagcatttaatgcagtcaagggtttgacctaaagatggggcgaagctttgagaaagaaatccatcgaaaa--ata 16668272  T
Q  923 taaatctacttcagcaggaatcgaa 947  Q
     |||| | |||||||||||||||||    
T  16668271 caaatgtgcttcagcaggaatcgaa 16668247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 824 - 877
Target Start/End: Complemental strand, 20193567 - 20193514
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20193567 tgttagtcaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 20193514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 822 - 877
Target Start/End: Complemental strand, 17426510 - 17426455
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||    
T  17426510 tttgttagtcaatatttgtgagaatatgatcatttaatgcactcaagggtttgacc 17426455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 824 - 882
Target Start/End: Complemental strand, 12821609 - 12821551
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaga 882  Q
    |||||| ||||||||||||||| |  |||||||||| ||||||||||||||||| ||||    
T  12821609 tgttagtcaatatttgtgaaaagagtatcatttaatacagtcaagggtttgacctaaga 12821551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 823 - 882
Target Start/End: Complemental strand, 22352405 - 22352346
Alignment:
Q  823 ttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaga 882  Q
    |||||||||||||||||||||||    ||||||||||| |||||| ||||||||| ||||    
T  22352405 ttgttagccaatatttgtgaaaagggtatcatttaatgtagtcaaaggtttgacctaaga 22352346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 824 - 882
Target Start/End: Complemental strand, 25389370 - 25389312
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaga 882  Q
    ||||||||||||||| ||||||    |||||||||| ||||||||||||||||| ||||    
T  25389370 tgttagccaatatttatgaaaagggtatcatttaatacagtcaagggtttgacctaaga 25389312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 8e-30; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 824 - 987
Target Start/End: Original strand, 18108417 - 18108581
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc-aaagatgaggcgtagctatgcggatggaattcatcgaaaaggata 922  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||| ||||||||| || | | | ||| |||||||||  |||    
T  18108417 tgttagccaatatttgtgagaatatgatcatttaatgcagtcaagggtttgacctaaaaatggggcgtagctttgtgaaagaaatccatcgaaaa--ata 18108514  T
Q  923 taaatctacttcagcaggaatcgaagaa-tagttttt-gttcgacgagtaaaggaagttgtcgacgc 987  Q
     || | |||||||||||||||||||||| | |||||| ||||||||  |||| ||||||||||||||    
T  18108515 caagtgtacttcagcaggaatcgaagaagttgtttttagttcgacggataaaagaagttgtcgacgc 18108581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 822 - 876
Target Start/End: Complemental strand, 13277615 - 13277561
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgac 876  Q
    |||||||||| |||||||||||||||  |||||||||||||||||||||||||||    
T  13277615 tttgttagccgatatttgtgaaaatactatcatttaatgcagtcaagggtttgac 13277561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 822 - 877
Target Start/End: Complemental strand, 14714524 - 14714469
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||||||||||||||||||| |  |||||||||||||||||| |||||||||    
T  14714524 tttgttagccaatatttgtgaaaagagtatcatttaatgcagtcaaaggtttgacc 14714469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 823 - 877
Target Start/End: Complemental strand, 13292992 - 13292938
Alignment:
Q  823 ttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    ||||||||| ||||||||||||| |  ||||||||||||||||||||||||||||    
T  13292992 ttgttagccgatatttgtgaaaagactatcatttaatgcagtcaagggtttgacc 13292938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 824 - 876
Target Start/End: Complemental strand, 15154053 - 15154001
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgac 876  Q
    |||||||| ||||||||||||| |  |||||||||||||||||||||||||||    
T  15154053 tgttagccgatatttgtgaaaacactatcatttaatgcagtcaagggtttgac 15154001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 824 - 877
Target Start/End: Complemental strand, 14776202 - 14776149
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||||||||||||||||| |  |||||||||||||||||| || ||||||    
T  14776202 tgttagccaatatttgtgaaaagagtatcatttaatgcagtcaaagggttgacc 14776149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 822 - 873
Target Start/End: Complemental strand, 14557286 - 14557235
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggttt 873  Q
    |||||||||| ||||||||||||| |  ||||||||||||||||||| ||||    
T  14557286 tttgttagccgatatttgtgaaaacactatcatttaatgcagtcaagagttt 14557235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 1e-22; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 824 - 949
Target Start/End: Complemental strand, 14346312 - 14346188
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc-aaagatgaggcgtagctatgcggatggaattcatcgaaaaggata 922  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||| |||| || | | | ||| |||||||||  |||    
T  14346312 tgttagccaatatttgtgagaatatgagcatttaatgcagtcaagggtttgaccgaaagatggggcgaagctttgagaaagaaatccatcgaaaa--ata 14346215  T
Q  923 taaatctacttcagcaggaatcgaaga 949  Q
     |||| | |||||||||||||||||||    
T  14346214 caaatgtgcttcagcaggaatcgaaga 14346188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 824 - 949
Target Start/End: Complemental strand, 14036282 - 14036158
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc-aaagatgaggcgtagctatgcggatggaattcatcgaaaaggata 922  Q
    ||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||| |||| || | | | ||| |||||||||  |||    
T  14036282 tgttagccaatatttgtgagaatatgagcatttaatgcagtcaagggtttgaccgaaagatggggcgaagctttgagaaagaaatccatcgaaaa--ata 14036185  T
Q  923 taaatctacttcagcaggaatcgaaga 949  Q
     |||| | |||||||||||||| ||||    
T  14036184 caaatgtgcttcagcaggaatcaaaga 14036158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 822 - 949
Target Start/End: Complemental strand, 14324121 - 14323995
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc-aaagatgaggcgtagctatgcggatggaattcatcgaaaagga 920  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||||| |||| | || || | | | ||| ||| |||||  |    
T  14324121 tttgttagccaatatttgtgagaatatgagcatttaatgcagtcaagggtttgaccgaaagatggggcgaaactttgagaaagaaatccattgaaaa--a 14324024  T
Q  921 tataaatctacttcagcaggaatcgaaga 949  Q
    || |||| | |||||||||||||||||||    
T  14324023 tacaaatgtgcttcagcaggaatcgaaga 14323995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 824 - 877
Target Start/End: Complemental strand, 44278079 - 44278026
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44278079 tgttagtcaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 44278026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 818 - 950
Target Start/End: Complemental strand, 18115638 - 18115509
Alignment:
Q  818 taactttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaagatgaggcgtagctatgcggatggaattcatcgaaaa 917  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||||  |||||||| || ||| ||||||||| ||  ||  |||| |||||||||    
T  18115638 taacattgttagccaatatttgtggaaatatgaccatttaatgcagtcaaacgtttgacctaaaatggggcgtagctttg-tgaaagaatccatcgaaaa 18115540  T
Q  918 ggatataaatctacttcagcaggaatcgaagaa 950  Q
      ||  || | ||||||||||||||||||||||    
T  18115539 --atgcaagtttacttcagcaggaatcgaagaa 18115509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 818 - 950
Target Start/End: Complemental strand, 18142206 - 18142077
Alignment:
Q  818 taactttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaagatgaggcgtagctatgcggatggaattcatcgaaaa 917  Q
    |||| ||||||||||||||||||| |||||||| ||||||||||||||||  |||||||| || ||| ||||||||| ||  ||  |||| |||||||||    
T  18142206 taacattgttagccaatatttgtggaaatatgaccatttaatgcagtcaaacgtttgacctaaaatggggcgtagctttg-tgaaagaatccatcgaaaa 18142108  T
Q  918 ggatataaatctacttcagcaggaatcgaagaa 950  Q
      ||  || | ||||||||||||||||||||||    
T  18142107 --atgcaagtttacttcagcaggaatcgaagaa 18142077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 824 - 877
Target Start/End: Complemental strand, 1978600 - 1978547
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    ||||||||||||||||||||||    |||||||||| | |||||||||||||||    
T  1978600 tgttagccaatatttgtgaaaagggtatcatttaatactgtcaagggtttgacc 1978547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 824 - 877
Target Start/End: Complemental strand, 18175254 - 18175201
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||| ||||| |||||||||  |||||||||||  |||||||||||||||    
T  18175254 tgttagccgatattggtgaaaatactatcatttaatgtggtcaagggtttgacc 18175201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0516 (Bit Score: 52; Significance: 3e-20; HSPs: 1)
Name: scaffold0516
Description:

Target: scaffold0516; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 822 - 877
Target Start/End: Complemental strand, 11503 - 11448
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11503 tttgttagtcaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 11448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0740 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 822 - 894
Target Start/End: Original strand, 5351 - 5424
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttga-ccaaagatgaggcgtagct 894  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||| |||||||||    
T  5351 tttgttagtcaatatttgtgagaatatgatcatttaatgcagtcaagggtttgacccaaaaatggggcgtagct 5424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130 (Bit Score: 48; Significance: 7e-18; HSPs: 3)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 826 - 877
Target Start/End: Complemental strand, 28921 - 28870
Alignment:
Q  826 ttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28921 ttagccaatatttgtgagaatatgatcatttaatgcagtcaagggtttgacc 28870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 824 - 877
Target Start/End: Original strand, 39600 - 39653
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||| |||||||||||||||| |||| ||||||  |||||||||||||||    
T  39600 tgttagccgatatttgtgaaaatattatcaattaatgtggtcaagggtttgacc 39653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0130; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 822 - 877
Target Start/End: Complemental strand, 29729 - 29674
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    ||||||||||||||||||||||||    |||||||||| ||||||| |||||||||    
T  29729 tttgttagccaatatttgtgaaaagggtatcatttaatacagtcaaaggtttgacc 29674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 48; Significance: 7e-18; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 822 - 877
Target Start/End: Original strand, 43932 - 43987
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  43932 tttgttagccgatatttgtgaaaatattatcatttaatgcagtcaagggtttgacc 43987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 824 - 877
Target Start/End: Original strand, 22758 - 22811
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  22758 tgttagccgatatttgtgaaaatattatcatttaatgcagtcaagggtttgacc 22811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 48; Significance: 7e-18; HSPs: 2)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 822 - 877
Target Start/End: Complemental strand, 46680 - 46625
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  46680 tttgttagtcaatatttgtgagaatatgatcatttaatgcagtcaagggtttgacc 46625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 822 - 877
Target Start/End: Complemental strand, 51318 - 51263
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  51318 tttgttagtcaatatttgtgagaatatgatcatttaatgcagtcaagggtttgacc 51263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 824 - 877
Target Start/End: Complemental strand, 43545 - 43492
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  43545 tgttagccgatatttgtgaaaatattatcatttaatgcagtcaagggtttgacc 43492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 822 - 877
Target Start/End: Original strand, 58237 - 58292
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||||| |||||||||||||||  ||||||||||||||||||||||||||||    
T  58237 tttgttagccgatatttgtgaaaatactatcatttaatgcagtcaagggtttgacc 58292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 822 - 873
Target Start/End: Original strand, 24954059 - 24954110
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggttt 873  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  24954059 tttgttagccaatatttgtgagaatatgagcatttaatgcagtcaagggttt 24954110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 824 - 873
Target Start/End: Original strand, 24967260 - 24967309
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggttt 873  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  24967260 tgttagccaatatttgtgagaatatgagcatttaatgcagtcaagggttt 24967309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 822 - 877
Target Start/End: Complemental strand, 23190621 - 23190566
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||||| |||||||||||||||  |||||||||||  |||||||||||||||    
T  23190621 tttgttagccgatatttgtgaaaatactatcatttaatgtggtcaagggtttgacc 23190566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 822 - 877
Target Start/End: Complemental strand, 23611876 - 23611821
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||||| |||||||||||||||  |||||||||||  |||||||||||||||    
T  23611876 tttgttagccgatatttgtgaaaatactatcatttaatgtggtcaagggtttgacc 23611821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 823 - 877
Target Start/End: Complemental strand, 23204271 - 23204217
Alignment:
Q  823 ttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    ||||||||| |||||||||||||||  |||||||||||  |||||||||||||||    
T  23204271 ttgttagccgatatttgtgaaaatactatcatttaatgtggtcaagggtttgacc 23204217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 822 - 877
Target Start/End: Original strand, 22648279 - 22648334
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    ||||||| || |||||||||||||||  |||||||||||  |||||||||||||||    
T  22648279 tttgttacccgatatttgtgaaaatactatcatttaatgtggtcaagggtttgacc 22648334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 822 - 876
Target Start/End: Complemental strand, 23615524 - 23615470
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgac 876  Q
    ||||||| || |||||||||||||||  |||||||||||  ||||||||||||||    
T  23615524 tttgttaaccgatatttgtgaaaatactatcatttaatgtggtcaagggtttgac 23615470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 824 - 877
Target Start/End: Original strand, 22633528 - 22633581
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||| ||||||||||||||   |||||||||||  |||||||||||||||    
T  22633528 tgttagccgatatttgtgaaaattctatcatttaatgtggtcaagggtttgacc 22633581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0304 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0304
Description:

Target: scaffold0304; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 822 - 876
Target Start/End: Complemental strand, 6181 - 6127
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgac 876  Q
    |||||||||| |||||||||||||||  |||||||||||||||||||||||||||    
T  6181 tttgttagccgatatttgtgaaaatactatcatttaatgcagtcaagggtttgac 6127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 822 - 877
Target Start/End: Complemental strand, 19025780 - 19025725
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||||| ||||||||||||||   ||||||||||||||||||||||||||||    
T  19025780 tttgttagccgatatttgtgaaaatgctatcatttaatgcagtcaagggtttgacc 19025725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 823 - 877
Target Start/End: Original strand, 23431670 - 23431724
Alignment:
Q  823 ttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    ||||||||| |||||||||||||||  |||||||||||  |||||||||||||||    
T  23431670 ttgttagccgatatttgtgaaaatactatcatttaatgtggtcaagggtttgacc 23431724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 823 - 877
Target Start/End: Original strand, 23496283 - 23496337
Alignment:
Q  823 ttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    ||||||||| |||||||||||||||  |||||||||||  |||||||||||||||    
T  23496283 ttgttagccgatatttgtgaaaatactatcatttaatgtggtcaagggtttgacc 23496337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 824 - 877
Target Start/End: Complemental strand, 19038821 - 19038768
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||| ||||||||||||||   ||||||||||| ||||||||||||||||    
T  19038821 tgttagccgatatttgtgaaaatgctatcatttaatgtagtcaagggtttgacc 19038768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 822 - 877
Target Start/End: Original strand, 16209539 - 16209594
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    ||||||||||||||||||||||||    ||||||||||||||||||  ||||||||    
T  16209539 tttgttagccaatatttgtgaaaagggtatcatttaatgcagtcaaaagtttgacc 16209594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 824 - 877
Target Start/End: Complemental strand, 30755914 - 30755861
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    ||||||||||||||||||||||    |||||||||| ||||||| |||||||||    
T  30755914 tgttagccaatatttgtgaaaagggtatcatttaatacagtcaaaggtttgacc 30755861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 823 - 876
Target Start/End: Complemental strand, 15608 - 15555
Alignment:
Q  823 ttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgac 876  Q
    ||||||||| |||||||||||||||  ||||||||||||||||| |||||||||    
T  15608 ttgttagccgatatttgtgaaaatactatcatttaatgcagtcacgggtttgac 15555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 822 - 882
Target Start/End: Complemental strand, 118694 - 118634
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaga 882  Q
    ||||||||||||||||||||||||    |||||||||||||||||| ||||||||| ||||    
T  118694 tttgttagccaatatttgtgaaaagggtatcatttaatgcagtcaaaggtttgacctaaga 118634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 824 - 882
Target Start/End: Complemental strand, 142604 - 142546
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaga 882  Q
    ||||||||||||||||||||||    |||||||||||||||||| ||||||||| ||||    
T  142604 tgttagccaatatttgtgaaaagggtatcatttaatgcagtcaaaggtttgacctaaga 142546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 822 - 882
Target Start/End: Original strand, 389832 - 389892
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaga 882  Q
    ||||||||||||||||||||||||    |||||||||| ||||||||||||||||| ||||    
T  389832 tttgttagccaatatttgtgaaaagggtatcatttaatacagtcaagggtttgacctaaga 389892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 822 - 864
Target Start/End: Complemental strand, 115738 - 115696
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagt 864  Q
    ||||||||||||||||||||||||  | |||||||||||||||    
T  115738 tttgttagccaatatttgtgaaaagtttatcatttaatgcagt 115696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 822 - 882
Target Start/End: Original strand, 21530042 - 21530102
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaga 882  Q
    ||||||||||||||||||||||||    |||||||||||||||||| ||||||||| ||||    
T  21530042 tttgttagccaatatttgtgaaaaggctatcatttaatgcagtcaaaggtttgacctaaga 21530102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 824 - 882
Target Start/End: Original strand, 21504377 - 21504435
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaga 882  Q
    ||||||||||||||||||||||    |||||||||||||||||| ||||||||| ||||    
T  21504377 tgttagccaatatttgtgaaaaggctatcatttaatgcagtcaaaggtttgacctaaga 21504435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 824 - 882
Target Start/End: Complemental strand, 21983000 - 21982942
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaga 882  Q
    ||||||||||||||||||||||    |||||||||||||||||| ||||||||| ||||    
T  21983000 tgttagccaatatttgtgaaaagggtatcatttaatgcagtcaaaggtttgacctaaga 21982942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 824 - 882
Target Start/End: Complemental strand, 26274483 - 26274425
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaga 882  Q
    ||||||||||||||||||||||    |||||||||||||||||| ||||||||| ||||    
T  26274483 tgttagccaatatttgtgaaaaggctatcatttaatgcagtcaaaggtttgacctaaga 26274425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 824 - 882
Target Start/End: Complemental strand, 20506705 - 20506647
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaga 882  Q
    ||||||||||||||||||||||    |||||||||| ||||||| ||||||||| ||||    
T  20506705 tgttagccaatatttgtgaaaagggtatcatttaatacagtcaaaggtttgacctaaga 20506647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0358 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0358
Description:

Target: scaffold0358; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 822 - 877
Target Start/End: Original strand, 15458 - 15513
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    ||||||||||||||||||||||||    |||||||||| |||||||||||||||||    
T  15458 tttgttagccaatatttgtgaaaagggtatcatttaatacagtcaagggtttgacc 15513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0323 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 822 - 873
Target Start/End: Original strand, 4250 - 4301
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggttt 873  Q
    |||||||||| |||||||||| ||||  ||||||||||||||||||||||||    
T  4250 tttgttagccgatatttgtgagaatagtatcatttaatgcagtcaagggttt 4301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 36; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 823 - 882
Target Start/End: Complemental strand, 18889 - 18830
Alignment:
Q  823 ttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaga 882  Q
    |||||||||||||||||||||||    |||||||||||||||||| ||||||||| ||||    
T  18889 ttgttagccaatatttgtgaaaaggctatcatttaatgcagtcaaaggtttgacctaaga 18830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 823 - 882
Target Start/End: Complemental strand, 28420 - 28361
Alignment:
Q  823 ttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaga 882  Q
    |||||||||||||||||||||||    |||||||||||||||||| ||||||||| ||||    
T  28420 ttgttagccaatatttgtgaaaaggctatcatttaatgcagtcaaaggtttgacctaaga 28361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 823 - 876
Target Start/End: Original strand, 35594 - 35647
Alignment:
Q  823 ttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgac 876  Q
    ||||||||| |||||| ||||||||  ||||||||||||||||| |||||||||    
T  35594 ttgttagccgatatttatgaaaatactatcatttaatgcagtcacgggtttgac 35647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 824 - 877
Target Start/End: Original strand, 2172 - 2225
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||| ||||||||||||||   ||||||||||||||||||||||| ||||    
T  2172 tgttagccgatatttgtgaaaatgctatcatttaatgcagtcaagggttggacc 2225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 824 - 877
Target Start/End: Original strand, 63528 - 63581
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||||||||||||||||| |  |||||||||||||||||| || ||||||    
T  63528 tgttagccaatatttgtgaaaagagtatcatttaatgcagtcaaagggttgacc 63581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0241 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 822 - 882
Target Start/End: Original strand, 24821 - 24881
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgaccaaaga 882  Q
    ||||||||||||||||||||||||    |||||||||||||||||| || |||||| ||||    
T  24821 tttgttagccaatatttgtgaaaaggctatcatttaatgcagtcaaaggcttgacctaaga 24881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 822 - 877
Target Start/End: Complemental strand, 27167 - 27112
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||||||||||||||||| |    |||||||||||||||||| |||||||||    
T  27167 tttgttagccaatatttgtgaagaggctatcatttaatgcagtcaaaggtttgacc 27112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 822 - 877
Target Start/End: Original strand, 28863 - 28918
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||||| ||||||||||||| |  |||||||||| ||||||| |||||||||    
T  28863 tttgttagccgatatttgtgaaaagagtatcatttaatacagtcaaaggtttgacc 28918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 822 - 877
Target Start/End: Complemental strand, 44652 - 44597
Alignment:
Q  822 tttgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||||||||||||||||| |    |||||||||||||||||| |||||||||    
T  44652 tttgttagccaatatttgtgaagaggctatcatttaatgcagtcaaaggtttgacc 44597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0282 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 824 - 877
Target Start/End: Complemental strand, 9145 - 9093
Alignment:
Q  824 tgttagccaatatttgtgaaaatatgatcatttaatgcagtcaagggtttgacc 877  Q
    |||||||| |||||||||||||  | |||||||||||||||||| |||||||||    
T  9145 tgttagccgatatttgtgaaaaagt-atcatttaatgcagtcaaaggtttgacc 9093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University