View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5621-Insertion-3 (Length: 1040)

Name: NF5621-Insertion-3
Description: NF5621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5621-Insertion-3
NF5621-Insertion-3
[»] chr4 (8 HSPs)
chr4 (7-1015)||(592956-593958)
chr4 (457-857)||(182626-183029)
chr4 (640-816)||(29219766-29219944)
chr4 (308-357)||(182460-182509)
chr4 (487-582)||(29220009-29220104)
chr4 (88-154)||(182225-182291)
chr4 (315-355)||(3014133-3014173)
chr4 (750-814)||(3014404-3014471)
[»] chr1 (6 HSPs)
chr1 (308-583)||(44605008-44605278)
chr1 (308-583)||(44626773-44627049)
chr1 (648-815)||(44605348-44605515)
chr1 (667-816)||(44627134-44627283)
chr1 (930-991)||(44605627-44605690)
chr1 (97-213)||(44626493-44626609)
[»] chr7 (2 HSPs)
chr7 (534-583)||(40672373-40672422)
chr7 (315-355)||(40672520-40672560)


Alignment Details
Target: chr4 (Bit Score: 870; Significance: 0; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 870; E-Value: 0
Query Start/End: Original strand, 7 - 1015
Target Start/End: Complemental strand, 593958 - 592956
Alignment:
Q  7 actatttacacaccaggtgctacaaatagaactgttttcaaccctgtggtggctggtgaaactcaacatacaaagcaattgtctgctgttccttctaagc 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  593958 actatttacacaccaggtgctacaaatagaactgttttcaaccctgtggtggctgatgaaactcaacatacaaagcaattgtctgctgttccttctaagc 593859  T
Q  107 cgagtgctgggaacctccagtcgcctatttgcagcatcatgggtgatgcatcctccggcaaaaccatgcttcttcattgtattcgaggtagtaatgttca 206  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  593858 cgagtgctgggaacctccggtcgcctatttgcagcatcatgggtgatgcatcctccggcaaaaccatgcttcttcattgtattcgaggtagtaatgttca 593759  T
Q  207 acaaggtcatgaagcttgcagtttcacacactatcctgctcaggaaatccgtggaagaagtctacttgttattgatgccccatgccaccaatcattcaag 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  593758 acaaggtcatgaagcttgcagtttcacacactatcctgctcaggaaatccgtggaagaagtctacttgttattgatgccccatgccaccaatcattcaag 593659  T
Q  307 cgttcaggtctatgtgatattgcaattttggttgtagacattatgcatggcatgcagcaacaaactatagattcactcgatctattaaaaaggaccaaca 406  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  593658 cgttcaggtctatgtgatatcgcaattttggttgtagacattatgcatggcatacagcaacaaactatagattcactcgatctattaaaaaggaccaaca 593559  T
Q  407 cagacttcatcattgtcttgaataaggtgagcattcgactgcttgctaaatccaatatttgttctttataagttactcagttttgtcacactgttgttgc 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  593558 cagacttcatcattgtcttgaataaggtgagcattcgactgcttgcaaaatccaatatttgttctttataagttactcagttttgtcacactgttgttgc 593459  T
Q  507 aacattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctccaattcgtgaagcattgatgcagcagtatgcgagtactaaatatgagttt 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  593458 aacattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctccaattcgtgaagcattgatgcagcagtatgcgagtgctaaatatgagttt 593359  T
Q  607 cgtaggagggttgttaaggtagtaaaa-agcatttt-tcttcctaagttgtggcagatagtttttgttcatgttcgccgtgctaatttttcttgttttac 704  Q
    ||||||||||| |||||||||||||||    ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  593358 cgtaggagggtcgttaaggtagtaaaattttattttatttttctaagttgtggcagatagtttttgttcatgttcgccgtgctaatttttcttgttttac 593259  T
Q  705 ttgtagattgtttctcagttcagaatgcttggcgtaaatgctcaattgtattatgaaaacaatacaatgggagaaacattcagcattgtgccgacaagtg 804  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  593258 ttctagattgtttctcagttcaggatgcttggcgtaaatgctcaattgtattatgaaaacaatacaatgggagaaacattcagcattgtgccgacaagtg 593159  T
Q  805 caataaggtaacaaggtaacagtctttcttgtagccacaactctctttcactgtccctattatgagaaatcannnnnnnggggttggtaaatggcacaat 904  Q
    ||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  593158 caat--------aaggtaacagtctttcttgtagccacaactctctttcactgtccctattatgagaaatcatttttttggggttggtaaatggcacaat 593067  T
Q  905 agctggttttggaccaccattttccgttgggtctttccaattctttgtggttaaagttgccatgaaatcatgttattcttggatatag-taatgtcttct 1003  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  593066 agctggttttggacccccattttccgttgggtctttccaattctttgtggttaaagttgccatgaaatcatgttattcttggatatagttaatgtc-tct 592968  T
Q  1004 tttgtcattgag 1015  Q
    ||||||||||||    
T  592967 tttgtcattgag 592956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 457 - 857
Target Start/End: Original strand, 182626 - 183029
Alignment:
Q  457 tccaatatttgttctttataagttactcagttttgtcacactgttgttgcaacattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctc 556  Q
    |||||||||||||||||  | |||| ||||||||||||||  ||| ||||||||||| ||||||| |||||||||||||||||||||||||| |||||||    
T  182626 tccaatatttgttctttc-aggttattcagttttgtcacatggttcttgcaacattgcaggtggacaggatttgtgcctggcaaacatgtcgtaatgctc 182724  T
Q  557 caattcgtgaagcattgatgcagcagtatgcgagtactaaatatgagtttcgtaggagggttgttaaggtagtaaaaagcattttt-----cttcctaag 651  Q
    |||||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||||  ||||||||||||||  | |||||     ||| |||||    
T  182725 caattcgtgaagcattgatgcaacagtatgggagtgctaaatacgagtttcgtaggagggtcattaaggtagtaaaagacgtttttttttcctttctaag 182824  T
Q  652 ttgtggcagatagtttttgttcatgttcgccgtgctaatttttcttgttttacttgtagattgtttctcagttcagaatgcttggcgtaaatgctcaatt 751  Q
    ||||||||||| ||||||||||||||| ||| ||||||||||| |  |||||||| |||||| ||||||||||||| ||||| || |||||| |||||||    
T  182825 ttgtggcagattgtttttgttcatgtttgccatgctaatttttttccttttacttctagattatttctcagttcaggatgctcggtgtaaatactcaatt 182924  T
Q  752 gtattatgaaaacaatacaatgggagaaacattcagcattgtgccgacaagtgcaataaggtaacaaggtaacagtctttcttgtagccacaactctctt 851  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||   || |  |||||||||||||||||||| |||||    
T  182925 gtattatgaaaacaaaacaatgggagaaacattcaacattgtgccgacaagtgcaataaggtaactgtgt-attgtctttcttgtagccacaacactctt 183023  T
Q  852 tcactg 857  Q
    ||||||    
T  183024 tcactg 183029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 640 - 816
Target Start/End: Complemental strand, 29219944 - 29219766
Alignment:
Q  640 tttcttcctaagttgtggcagatagtttttgttcatgttcgccgtgctaatttttcttgttttacttgtagattgtttctcagttcagaatgcttggcgt 739  Q
    |||||| ||||| |||||||||| ||||||||| |||||||||    |||||||||| | ||||||| |||||| || |||| ||||  |  |  ||  |    
T  29219944 tttctttctaagctgtggcagattgtttttgttaatgttcgcc----taatttttctcggtttacttctagattattgctcaattcaagagtcaggggct 29219849  T
Q  740 aaatgctcaattgtattatgaaaa------caatacaatgggagaaacattcagcattgtgccgacaagtgcaataaggtaac 816  Q
    |||| || ||||||||||| ||||      ||| ||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  29219848 aaatactgaattgtattataaaaataaaaacaaaacaatgggagaaacattcaacattgtgccaacaagtgcaataaggtaac 29219766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 308 - 357
Target Start/End: Original strand, 182460 - 182509
Alignment:
Q  308 gttcaggtctatgtgatattgcaattttggttgtagacattatgcatggc 357  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  182460 gttcaagtctatgtgatattgcaattttggttgtagatattatgcatggc 182509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 487 - 582
Target Start/End: Complemental strand, 29220104 - 29220009
Alignment:
Q  487 ttttgtcacactgttgttgcaacattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctccaattcgtgaagcattgatgcagcag 582  Q
    ||||||||||||||| ||||||| ||| ||||||||| ||||  |  |||| |||||||||  |||||||||||| || ||||| |||||||||||    
T  29220104 ttttgtcacactgttcttgcaactttgcaggtggatatgattcctcgctggaaaacatgtcctaatgctccaatttgtaaagcagtgatgcagcag 29220009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 154
Target Start/End: Original strand, 182225 - 182291
Alignment:
Q  88 tctgctgttccttctaagccgagtgctgggaacctccagtcgcctatttgcagcatcatgggtgatg 154  Q
    |||||||| |||| ||||||| ||| ||||||||| | ||||||||||||| ||||||| |||||||    
T  182225 tctgctgtgccttgtaagccgggtgatgggaacctacggtcgcctatttgctgcatcataggtgatg 182291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 315 - 355
Target Start/End: Original strand, 3014133 - 3014173
Alignment:
Q  315 tctatgtgatattgcaattttggttgtagacattatgcatg 355  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  3014133 tctatgtgatattgctattttggttgttgacattatgcatg 3014173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 750 - 814
Target Start/End: Original strand, 3014404 - 3014471
Alignment:
Q  750 ttgtattatgaaaacaatacaatgggag---aaacattcagcattgtgccgacaagtgcaataaggta 814  Q
    ||||||||| ||||| | ||||| ||||   ||||||||||||||||||| |||||||| ||||||||    
T  3014404 ttgtattataaaaacgaaacaatcggaggacaaacattcagcattgtgcccacaagtgctataaggta 3014471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 2e-52; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 308 - 583
Target Start/End: Original strand, 44605008 - 44605278
Alignment:
Q  308 gttcaggtctatgtgatattgcaattttggttgtagacattatgcatggcatgcagcaacaaactatagattcactcgatctattaaaaaggaccaacac 407  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |  ||| |||||||||||| |||||| |||||||||||| ||  |||||    
T  44605008 gttcaggtctatgtgatattgcaattttggttgttgacattatgcatggcttagagccacaaactatagagtcactcaatctattaaaaatgaggaacac 44605107  T
Q  408 agacttcatcattgtcttgaataaggtgagcattcgactgcttgctaaatccaatatttgttctttataagttactcagttttgtcacactgttgttgca 507  Q
    ||| |||||  |||  || ||||||||||| ||  || ||| ||||   |||| |||  |||||||||| ||| |||| ||||||||||||||| |||||    
T  44605108 agagttcattgttgcattaaataaggtgagtatgaga-tgc-tgct---tccagtatacgttctttataggttcctcaattttgtcacactgttcttgca 44605202  T
Q  508 acattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctccaattcgtgaagcattgatgcagcagt 583  Q
    ||||||||||| || ||| ||| || |||| |||||||||||||||||||||||||| ||||| ||| ||||||||    
T  44605203 acattgtaggttgacaggctttatggctggaaaacatgtcgcaatgctccaattcgtaaagcaatgaagcagcagt 44605278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 308 - 583
Target Start/End: Original strand, 44626773 - 44627049
Alignment:
Q  308 gttcaggtctatgtgatattgcaattttggttgtagacattatgcatggcatgcagcaacaaactatagattcactcgatctattaaaaaggaccaacac 407  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||| |  ||| |||||||||||| |||||| |||||||||||| ||  |||||    
T  44626773 gttcaggtctatgtgatattgcaattttggttgtggacattatgcatggcttagagccacaaactatagagtcactcaatctattaaaaatgaggaacac 44626872  T
Q  408 agacttcatcattgtcttgaataaggtgagcat--tcgactg-cttgctaaatccaatatttgttctttataagttactcagttttgtcacactgttgtt 504  Q
     || |||||| |||  |||||||||||||||||  ||   ||   | |||  |||||||| |||| |||| | |||  |||  | |||  ||||||| ||    
T  44626873 tgaattcatcgttgcattgaataaggtgagcatactctcatgagctactacttccaatatatgttttttacaggttgttcaactctgt--cactgttctt 44626970  T
Q  505 gcaacattgtaggtggataggatttgtgcctggcaaacatgtcgcaatgctccaattcgtgaagcattgatgcagcagt 583  Q
    ||||||||| |||| || ||| ||| || |||| |||||||||||||||||||||||||| ||||| ||| ||||||||    
T  44626971 gcaacattgcaggttgacaggctttatggctggaaaacatgtcgcaatgctccaattcgtaaagcaatgacgcagcagt 44627049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 648 - 815
Target Start/End: Original strand, 44605348 - 44605515
Alignment:
Q  648 taagttgtggcagatagtttttgttcatgttcgccgtgctaatttttcttgttttacttgtagattgtttctcagttcagaatgcttggcgtaaatgctc 747  Q
    |||||||||| |||| ||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||| |||||||||     |  ||  ||||| ||     
T  44605348 taagttgtggtagattgtttttgttaatgtttgccatgctaatttttcttgttttacttctagattgttactcagttcaaggaacaagggctaaatactg 44605447  T
Q  748 aattgtattatgaaaacaatacaatgggagaaacattcagcattgtgccgacaagtgcaataaggtaa 815  Q
    | ||||||||| |||| ||   ||||||||||||||||||||||||||| ||||||||||||||||||    
T  44605448 agttgtattataaaaataaagaaatgggagaaacattcagcattgtgcctacaagtgcaataaggtaa 44605515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 667 - 816
Target Start/End: Original strand, 44627134 - 44627283
Alignment:
Q  667 tttgttcatgttcgccgtgctaatttttcttgttttacttgtagattgtttctcagttcagaatgcttggcgtaaatgctcaattgtattatgaaaacaa 766  Q
    |||||| |||||| || |||||||||||||||||| |||| ||||| ||| | |||||||     |  ||  ||||| || ||||||||||  |||||||    
T  44627134 tttgttaatgttcaccatgctaatttttcttgtttcacttctagatcgttacccagttcaaggaacaagggctaaatactgaattgtattacaaaaacaa 44627233  T
Q  767 tacaatgggagaaacattcagcattgtgccgacaagtgcaataaggtaac 816  Q
       |||||| |||||||||||||||||||| |||||||||||||||||||    
T  44627234 agaaatgggcgaaacattcagcattgtgcctacaagtgcaataaggtaac 44627283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 930 - 991
Target Start/End: Original strand, 44605627 - 44605690
Alignment:
Q  930 gttgggtctttccaattcttt--gtggttaaagttgccatgaaatcatgttattcttggatata 991  Q
    |||| ||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||    
T  44605627 gttgcgtctttccaattctttatgtggttaaagttgccatggaatcatgttattcttggatata 44605690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 213
Target Start/End: Original strand, 44626493 - 44626609
Alignment:
Q  97 ccttctaagccgagtgctgggaacctccagtcgcctatttgcagcatcatgggtgatgcatcctccggcaaaaccatgcttcttcattgtattcgaggta 196  Q
    ||||||||||||||||  |||||||| | |||||| |||||| ||||||||||| |||    | | |||||||||| ||||||  |||| ||||||||||    
T  44626493 ccttctaagccgagtgaagggaaccttcggtcgccaatttgctgcatcatgggtcatgtggacactggcaaaaccaagcttctggattgcattcgaggta 44626592  T
Q  197 gtaatgttcaacaaggt 213  Q
      ||||||||| |||||    
T  44626593 ccaatgttcaagaaggt 44626609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 534 - 583
Target Start/End: Complemental strand, 40672422 - 40672373
Alignment:
Q  534 ctggcaaacatgtcgcaatgctccaattcgtgaagcattgatgcagcagt 583  Q
    |||| ||||||||| |||||||||| ||||| ||||||||||||||||||    
T  40672422 ctggaaaacatgtcccaatgctccatttcgtaaagcattgatgcagcagt 40672373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 315 - 355
Target Start/End: Complemental strand, 40672560 - 40672520
Alignment:
Q  315 tctatgtgatattgcaattttggttgtagacattatgcatg 355  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  40672560 tctatgtgatattgctattttggttgttgacattatgcatg 40672520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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