View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5621-Insertion-4 (Length: 1018)
Name: NF5621-Insertion-4
Description: NF5621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5621-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 885; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 885; E-Value: 0
Query Start/End: Original strand, 18 - 924
Target Start/End: Complemental strand, 41171794 - 41170889
Alignment:
| Q |
18 |
ataagtaaaattagtctatacctaataagtaatatgattattgttatcatttgtaaattaaatattcagtattgatttgagaggaaatttgttgtcctac |
117 |
Q |
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| T |
41171794 |
ataagtaaaattagtctatacctaataagtaatatgattattgttatcatttgtaaattaaatattcagtattgatttgagaggaaatttgttgtcctac |
41171695 |
T |
|
| Q |
118 |
atatccaatcaagaaaatgaatgttgcaatgaaaactcaagatagtgcatggtaatccacattataaccacactttcgaaatatctgcataacctaaaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41171694 |
atatccaatcaagaaaatgaatgttgcaatgaaaactcaagatagtgcatggtgatccacattataaccacactttcgaaatatctgcataacctaaaat |
41171595 |
T |
|
| Q |
218 |
tagatacaattgcaccttgctgaatagtcaaagtagcaatat-gtggtggtcccagcaataaggtctgatttcaagaactaagggtgtattgaggggccc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41171594 |
tagatacaattgcaccttgctgaatagtcaaagtagcaatatagtggtggtcccagcaataaggtctgatttcaagaactaagggtgtattgaggggccc |
41171495 |
T |
|
| Q |
317 |
actccaaaatgagcaaaaactaccgaagaatagtagtcaaaattacccatctctttttacaatattggcctaagaaccttggaataaaagtttcattttt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41171494 |
actccaaaatgagcaaaaactaccgaagaatagtagtcaaaattacccatctctttttacaatattggcctaagaaccttggaataaaagtttcattttt |
41171395 |
T |
|
| Q |
417 |
gtgacctgataacagattcaaaagtaagcctcctaacataatttttagatagctgaactttaatcttaatctaagcatatgattggtttagtttctaaat |
516 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41171394 |
gtgacctgataacagattcaaaagtaagcctcctaacataatttttagatagctgaactttaatcttaatctaagcatatgattggtttagtttctaaat |
41171295 |
T |
|
| Q |
517 |
agctgaacttgcattgccatgggtcaaacctggtgtgagtgtgaccatgttgcaaagtcgtttggataattttaagtgaatgaatattgctctgtttact |
616 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41171294 |
agctgaacttgcattgccatgggtcaaacctggtgtgagtgtgaccatgttgcaaagtcgtttggataattttaagtgaatgaatattgctctgtttact |
41171195 |
T |
|
| Q |
617 |
tgaagcataatcatagtttttatgatgatcaaaatcaaaattttctatgaagaacattaatacagtcagaaattttccttccttggaacgaaaccttagg |
716 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41171194 |
tgaagcataatcatagtttttatgatgatcaaaatcaaaattttctatgaagaacattaatacagtcagaaattttccttccttggaacgaaaccttagg |
41171095 |
T |
|
| Q |
717 |
agcaaatagcagccaacctaaagggacgaaaatcttgcaaagcatcatatatcctggcttttcagggattaacaccaacatgttggaattgatgttattc |
816 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41171094 |
agcaaatagcagccaacctaaagggacgaaaatcttgcaaagcatc--atatcctggcttttcagggattaacaccaacatgttggaattgatgttattc |
41170997 |
T |
|
| Q |
817 |
agcagcttaacatacgtagaaataatatcccaaaaagttaccactaaaaccatcggacctggagcactatcaaaaagttatgcacaaagcatagtattat |
916 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41170996 |
agcagcttaacatacgtagaaataatatcccaaaaagttaccactaaaaccatcggacctggagcactatcaaaaagttatgcacaaagcatagtattat |
41170897 |
T |
|
| Q |
917 |
cctccgta |
924 |
Q |
| |
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|||||||| |
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|
| T |
41170896 |
cctccgta |
41170889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 261 - 332
Target Start/End: Original strand, 38221268 - 38221340
Alignment:
| Q |
261 |
tggtggtcccagcaataaggtctgatttcaagaact-aagggtgtattgaggggcccactccaaaatgagcaa |
332 |
Q |
| |
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||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||| |||| |
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| T |
38221268 |
tggtgatcccagcaataaggtctgatttcaagaactgaagggtgtattgtggggcccactccaagatgggcaa |
38221340 |
T |
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