View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5621-Insertion-8 (Length: 295)

Name: NF5621-Insertion-8
Description: NF5621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5621-Insertion-8
NF5621-Insertion-8
[»] chr1 (20 HSPs)
chr1 (21-268)||(14716199-14716446)
chr1 (21-268)||(14669661-14669908)
chr1 (21-267)||(14683659-14683905)
chr1 (19-265)||(14705999-14706245)
chr1 (21-268)||(14654292-14654539)
chr1 (21-268)||(14664083-14664330)
chr1 (84-267)||(14676541-14676725)
chr1 (84-268)||(14652433-14652618)
chr1 (84-268)||(14662224-14662409)
chr1 (84-268)||(14681508-14681692)
chr1 (84-268)||(14674390-14674574)
chr1 (84-268)||(14679768-14679952)
chr1 (84-263)||(14708491-14708671)
chr1 (84-251)||(14667125-14667292)
chr1 (84-208)||(33988038-33988163)
chr1 (84-183)||(38175544-38175644)
chr1 (105-185)||(28366234-28366315)
chr1 (84-173)||(11872495-11872585)
chr1 (104-170)||(37422175-37422242)
chr1 (105-180)||(28698549-28698625)
[»] chr2 (20 HSPs)
chr2 (84-268)||(30731916-30732101)
chr2 (84-251)||(30733914-30734081)
chr2 (84-257)||(32918001-32918173)
chr2 (104-208)||(8979290-8979395)
chr2 (90-208)||(8973280-8973399)
chr2 (90-208)||(9026754-9026873)
chr2 (84-177)||(2841031-2841125)
chr2 (104-208)||(9032021-9032126)
chr2 (93-208)||(8988423-8988539)
chr2 (89-208)||(9030366-9030486)
chr2 (104-208)||(8984661-8984766)
chr2 (104-208)||(9023415-9023520)
chr2 (104-183)||(43850042-43850122)
chr2 (104-190)||(9008007-9008094)
chr2 (115-193)||(9020830-9020909)
chr2 (90-208)||(9016461-9016583)
chr2 (90-208)||(8992116-8992235)
chr2 (95-169)||(10763903-10763978)
chr2 (116-174)||(19232445-19232504)
chr2 (104-159)||(35701906-35701962)
[»] chr8 (12 HSPs)
chr8 (84-252)||(10944413-10944581)
chr8 (84-187)||(41841166-41841270)
chr8 (84-182)||(44878977-44879076)
chr8 (84-182)||(44880845-44880944)
chr8 (84-176)||(37682057-37682150)
chr8 (84-176)||(40054312-40054405)
chr8 (84-184)||(42555097-42555198)
chr8 (95-174)||(37679757-37679837)
chr8 (96-159)||(44582870-44582934)
chr8 (104-188)||(42092009-42092093)
chr8 (104-184)||(42220880-42220960)
chr8 (140-183)||(42872521-42872564)
[»] chr6 (4 HSPs)
chr6 (84-210)||(10795904-10796031)
chr6 (84-210)||(10791666-10791793)
chr6 (103-176)||(30521242-30521316)
chr6 (104-163)||(8875702-8875762)
[»] chr4 (9 HSPs)
chr4 (84-210)||(50077213-50077340)
chr4 (84-184)||(49106543-49106644)
chr4 (84-187)||(11652406-11652510)
chr4 (84-183)||(49108647-49108747)
chr4 (84-185)||(3461156-3461258)
chr4 (84-175)||(26984681-26984773)
chr4 (84-175)||(26998754-26998846)
chr4 (84-148)||(21503706-21503771)
chr4 (84-175)||(48205832-48205924)
[»] chr5 (4 HSPs)
chr5 (84-193)||(1716465-1716576)
chr5 (84-183)||(7524961-7525061)
chr5 (84-176)||(3643640-3643733)
chr5 (84-172)||(4103249-4103338)


Alignment Details
Target: chr1 (Bit Score: 171; Significance: 7e-92; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 21 - 268
Target Start/End: Complemental strand, 14716446 - 14716199
Alignment:
Q  21 acacacgagaggattagtagcaagctactaaagttgccactacccctcnnnnnnngtaactttatatcgtgtgaaccattgatccacaaatcaaatatta 120  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||       |||| || |||||||||||||||||| |||||| || | ||||||    
T  14716446 acacacgagaggattagtagcaagctactaaagttgcctctccccctcaaaaaa-gtaatttaatatcgtgtgaaccattggtccacatattagatatta 14716348  T
Q  121 aactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatgaactcggtgctgcttttatatcagacatcttc 219  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14716347 aactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgaactcggtgctgcttttatatcagacatcttc 14716248  T
Q  220 tcagttgttttcgtgactgctcgatgtgggactatttctcattgtacgc 268  Q
    |||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  14716247 tcagttattttcgtgactgctcaatgtgggactatttctcattgtacgc 14716199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 21 - 268
Target Start/End: Original strand, 14669661 - 14669908
Alignment:
Q  21 acacacgagaggattagtagcaagctactaaagttgccactacccctcnnnnnnngtaactttatatcgtgtgaaccattgatccacaaatcaaatatta 120  Q
    |||||| ||||||||||||||||||||||||||||||| || ||||||       |||| || |||||||||||||||||| |||||| |||| ||||||    
T  14669661 acacacaagaggattagtagcaagctactaaagttgcctctccccctcaaaaaa-gtaatttaatatcgtgtgaaccattggtccacatatcagatatta 14669759  T
Q  121 aactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatgaactcggtgctgcttttatatcagacatcttc 219  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||  |||| ||||||||||||||||||||| |||    
T  14669760 aactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcgttgctgcttttatatcagacatgttc 14669859  T
Q  220 tcagttgttttcgtgactgctcgatgtgggactatttctcattgtacgc 268  Q
    ||||||| |||| ||||| ||||||||||||||||||||||||||||||    
T  14669860 tcagttgctttcttgactactcgatgtgggactatttctcattgtacgc 14669908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 21 - 267
Target Start/End: Complemental strand, 14683905 - 14683659
Alignment:
Q  21 acacacgagaggattagtagcaagctactaaagttgccactacccctcnnnnnnngtaactttatatcgtgtgaaccattgatccacaaatcaaatatta 120  Q
    ||||||||||||| |||||||||||||||||||||||| || ||||||       |||| || |||||||||||||||||| |||||| |||| ||||||    
T  14683905 acacacgagaggactagtagcaagctactaaagttgcctctccccctcaaaaaa-gtaatttaatatcgtgtgaaccattggtccacatatcagatatta 14683807  T
Q  121 aactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatgaactcggtgctgcttttatatcagacatcttc 219  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||| ||| | ||| ||||||||| |||||||||||    
T  14683806 aactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaatatggactagctgccgcttttataacagacatcttc 14683707  T
Q  220 tcagttgttttcgtgactgctcgatgtgggactatttctcattgtacg 267  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||    
T  14683706 tcagttgctttcttgactgctcgatgtgggactatttctcattgtacg 14683659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 19 - 265
Target Start/End: Complemental strand, 14706245 - 14705999
Alignment:
Q  19 caacacacgagaggattagtagcaagctactaaagttgccactacccctcnnnnnnngtaactttatatcgtgtgaaccattgatccacaaatcaaatat 118  Q
    |||||||| ||||||||||||||||||||||||||||||| || ||||||       |||| || |||||||||||||||||| |||||| |||| ||||    
T  14706245 caacacacaagaggattagtagcaagctactaaagttgcctctccccctcaaaaaa-gtaatttaatatcgtgtgaaccattggtccacatatcagatat 14706147  T
Q  119 taaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatgaactcggtgctgcttttatatcagacatct 217  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||| |  |    
T  14706146 taaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgggctcggtgctgcttttatatcagaaacgt 14706047  T
Q  218 tctcagttgttttcgtgactgctcgatgtgggactatttctcattgta 265  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||    
T  14706046 tctcagtttctttcttgactgctcgatgtgggactatttctcattgta 14705999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 268
Target Start/End: Original strand, 14654292 - 14654539
Alignment:
Q  21 acacacgagaggattagtagcaagctactaaagttgccactacccctcnnnnnnngtaactttatatcgtgtgaaccattgatccacaaatcaaatatta 120  Q
    ||||||||||||| | ||||||||||||| |||| ||| || ||||||       |||| || |||||||||||||||||| |||||| |||| ||||||    
T  14654292 acacacgagaggactcgtagcaagctactgaagtggcctctccccctcaaaaaa-gtaatttaatatcgtgtgaaccattggtccacatatcagatatta 14654390  T
Q  121 aactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatgaactcggtgctgcttttatatcagacatcttc 219  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||  | |||||||||||||| |||||| |||    
T  14654391 aactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggacaagctgctgcttttatattagacattttc 14654490  T
Q  220 tcagttgttttcgtgactgctcgatgtgggactatttctcattgtacgc 268  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  14654491 tcagttgctttcttgactgctcgatgtgggactatttctcattgtacgc 14654539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 21 - 268
Target Start/End: Original strand, 14664083 - 14664330
Alignment:
Q  21 acacacgagaggattagtagcaagctactaaagttgccactacccctcnnnnnnngtaactttatatcgtgtgaaccattgatccacaaatcaaatatta 120  Q
    ||||||||||||| | ||||||||||||| |||| ||| || ||||||       |||| || |||||||||||||||||| |||||| |||| ||||||    
T  14664083 acacacgagaggactcgtagcaagctactgaagtggcctctccccctcaaaaaa-gtaatttaatatcgtgtgaaccattggtccacatatcagatatta 14664181  T
Q  121 aactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatgaactcggtgctgcttttatatcagacatcttc 219  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||  | |||||||||||||| |||||| |||    
T  14664182 aactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatggacaagctgctgcttttatattagacattttc 14664281  T
Q  220 tcagttgttttcgtgactgctcgatgtgggactatttctcattgtacgc 268  Q
    ||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  14664282 tcagttgctttcttgactgctcgatgtgggactatttctcattgtacgc 14664330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 84 - 267
Target Start/End: Complemental strand, 14676725 - 14676541
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  14676725 atatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaa 14676626  T
Q  183 agatgaactcggtgctgcttttatatcagacatcttctcagttgttttcgtgactgctcgatgtgggactatttctcattgtacg 267  Q
    | ||| ||| | ||| ||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  14676625 atatggactagctgccgcttttataacagacatcttctcagttgctttcttgactgctcgatgtgggactatttctcattgtacg 14676541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 84 - 268
Target Start/End: Complemental strand, 14652618 - 14652433
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    |||||||||| ||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| || ||    
T  14652618 atatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgatttcaa 14652519  T
Q  183 agatgaactcggtgctgcttttatatcagacatcttctcagttgttttcgtgactgctcgatgtgggactatttctcattgtacgc 268  Q
     || | ||  | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14652518 tgaaggaccagctgctgctcttatatcagacatcttctcagttgttttcttgactgctcgatgtgggactatttctcattgtacgc 14652433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 84 - 268
Target Start/End: Complemental strand, 14662409 - 14662224
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    |||||||||| ||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| || ||    
T  14662409 atatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgatttcaa 14662310  T
Q  183 agatgaactcggtgctgcttttatatcagacatcttctcagttgttttcgtgactgctcgatgtgggactatttctcattgtacgc 268  Q
     || | ||  | ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14662309 tgaaggaccagctgctgctcttatatcagacatcttctcagttgttttcttgactgctcgatgtgggactatttctcattgtacgc 14662224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 84 - 268
Target Start/End: Complemental strand, 14681692 - 14681508
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||    
T  14681692 atatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtataagttgaa 14681593  T
Q  183 agatgaactcggtgctgcttttatatcagacatcttctcagttgttttcgtgactgctcgatgtgggactatttctcattgtacgc 268  Q
    | |||  || ||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||||||| ||||||||||    
T  14681592 aaatgggctaggtgctgcttttatatcagacat-ttctccgttgctttcttgactgctcgatgtgggactatttcccattgtacgc 14681508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 84 - 268
Target Start/End: Complemental strand, 14674574 - 14674390
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    ||||| |||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |    
T  14674574 atatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgga 14674475  T
Q  183 agatgaactcggtgctgcttttatatcagacatcttctcagttgttttcgtgactgctcgatgtgggactatttctcattgtacgc 268  Q
    ||||   || ||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||||||| ||||||||||    
T  14674474 agattggctaggtgctgcttttatatcagacat-ttctccgttgctttcttgactgctcgatgtgggactatttcccattgtacgc 14674390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 84 - 268
Target Start/End: Complemental strand, 14679952 - 14679768
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    ||||| |||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |    
T  14679952 atatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgga 14679853  T
Q  183 agatgaactcggtgctgcttttatatcagacatcttctcagttgttttcgtgactgctcgatgtgggactatttctcattgtacgc 268  Q
    ||||   || ||||||||||||||||||||||| ||||| |||| |||| ||||||||||||||||||||||||| ||||||||||    
T  14679852 agattggctaggtgctgcttttatatcagacat-ttctccgttgctttcttgactgctcgatgtgggactatttcccattgtacgc 14679768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 84 - 263
Target Start/End: Complemental strand, 14708671 - 14708491
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    |||||||||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  14708671 atatcgtgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaa 14708572  T
Q  183 agatgaactcggtgctgcttttatatcagacatcttctcagttgttttcgtgactgctcgatgtgggactatttctcattg 263  Q
    |||||  |||  |  |||||||||||| ||||| |||||| ||| |||| |||||||||||||||||||||||||||||||    
T  14708571 agatgggctcactagtgcttttatatctgacattttctcaattgctttcttgactgctcgatgtgggactatttctcattg 14708491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 84 - 251
Target Start/End: Original strand, 14667125 - 14667292
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    ||||| |||||||||||| |||||  |||| |||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||  |    
T  14667125 atatcatgtgaaccattggtccacgtatcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaca 14667224  T
Q  183 agatgaactcggtgctgcttttatatcagacatcttctcagttgttttcgtgactgctcgatgtgggac 251  Q
    | ||||  ||  ||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||    
T  14667225 acatgagatc-ctgctgcttttatatctgacatgttctcagttgttttcttgactcctcgatgtgggac 14667292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 84 - 208
Target Start/End: Complemental strand, 33988163 - 33988038
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    |||||||||||  |||||| ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  33988163 atatcgtgtgactcattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaa 33988064  T
Q  183 agatgaactcggtgctgcttttatat 208  Q
    ||||| ||||  |  |||||||||||    
T  33988063 agatggactcacttatgcttttatat 33988038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 38175544 - 38175644
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    ||||||||||| ||||||   |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  38175544 atatcgtgtgacccattggaacacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaa 38175643  T
Q  183 a 183  Q
    |    
T  38175644 a 38175644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 105 - 185
Target Start/End: Original strand, 28366234 - 28366315
Alignment:
Q  105 cacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaaga 185  Q
    |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  28366234 cacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaaga 28366315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 173
Target Start/End: Original strand, 11872495 - 11872585
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagata-cacacttgatcttagccaaaaggccaagaaaggta 173  Q
    ||||||||||| ||||||| ||||| |||| ||||||||||||||||||||||||  |||||||||||||| ||||||||| |||||||||    
T  11872495 atatcgtgtgacccattgaaccacatatcatatattaaactgataagaacagatagtacacttgatcttagtcaaaaggccgagaaaggta 11872585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 37422242 - 37422175
Alignment:
Q  104 ccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaag 170  Q
    ||||| |||| |||||||||||||||||||| || | |||||||||||||||||||||||| ||||||    
T  37422242 ccacatatcagatattaaactgataagaacatatgctacacttgatcttagccaaaaggccgagaaag 37422175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 28698625 - 28698549
Alignment:
Q  105 cacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttg 180  Q
    |||| ||||||||||||| |||||| || | |||| ||| ||||||||||||||||| || ||||| ||||||||||    
T  28698625 cacatatcaaatattaaattgataaaaatatatactacatttgatcttagccaaaagaccgagaaatgtatgagttg 28698549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 84 - 268
Target Start/End: Complemental strand, 30732101 - 30731916
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    |||||||||||||||||| |||||| || | ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  30732101 atatcgtgtgaaccattggtccacatattagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaa 30732002  T
Q  183 agatgaactcggtgctgcttttatatcagacatcttctcagttgttttcgtgactgctcgatgtgggactatttctcattgtacgc 268  Q
    |||||  |||| ||||||||||||||||||||| |||||||||| |||| ||||| ||||||||||||||||||||||||||||||    
T  30732001 agatgggctcgttgctgcttttatatcagacatgttctcagttgctttcttgactactcgatgtgggactatttctcattgtacgc 30731916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 84 - 251
Target Start/End: Complemental strand, 30734081 - 30733914
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    ||||| |||||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||  |    
T  30734081 atatcatgtgaaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtataagttaca 30733982  T
Q  183 agatgaactcggtgctgcttttatatcagacatcttctcagttgttttcgtgactgctcgatgtgggac 251  Q
    | ||||  ||  ||||||||||||||| ||||| |||||| |||||||| ||||| |||||||||||||    
T  30733981 acatgagatc-ctgctgcttttatatctgacatgttctcacttgttttcttgactcctcgatgtgggac 30733914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 84 - 257
Target Start/End: Complemental strand, 32918173 - 32918001
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    |||||||||| ||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  32918173 atatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaa 32918074  T
Q  183 agatgaactcggtgctgcttttatatcagacatcttctcagttgttttcgtgactgctcgatgtgggactatttc 257  Q
     | |  ||| | ||||||||||||||| | ||| ||||  |||| |||| ||| | |||||||||||||||||||    
T  32918073 tg-tagactagctgctgcttttatatctg-cattttctatgttgctttcttgattcctcgatgtgggactatttc 32918001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 8979395 - 8979290
Alignment:
Q  104 ccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatgaactcggtgctgctt 202  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| | |  |||||    
T  8979395 ccactaatcaaatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatgaacttgcttatgctt 8979296  T
Q  203 ttatat 208  Q
    ||||||    
T  8979295 ttatat 8979290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 8973399 - 8973280
Alignment:
Q  90 tgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatga 188  Q
    ||||| ||||||  |||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8973399 tgtgacccattgggccactaatcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatga 8973300  T
Q  189 actcggtgctgcttttatat 208  Q
    ||||| |  |||||||||||    
T  8973299 actcgcttatgcttttatat 8973280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 9026873 - 9026754
Alignment:
Q  90 tgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatga 188  Q
    ||||| ||||||  |||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9026873 tgtgacccattgggccactaatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagatga 9026774  T
Q  189 actcggtgctgcttttatat 208  Q
    | ||| |  |||||||||||    
T  9026773 attcgcttatgcttttatat 9026754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 84 - 177
Target Start/End: Original strand, 2841031 - 2841125
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgag 177  Q
    ||||||||||| ||||||| ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  2841031 atatcgtgtgatccattgaaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgag 2841125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 9032126 - 9032021
Alignment:
Q  104 ccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatgaactcggtgctgctt 202  Q
    ||||| |||| ||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||| ||| |  |||||    
T  9032126 ccacatatcagatattaaactgataagaacagatactacacttgatcttaaccaaaaggccgagaaaggtatgagttgaaagatgaattcgcttatgctt 9032027  T
Q  203 ttatat 208  Q
    ||||||    
T  9032026 ttatat 9032021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 208
Target Start/End: Complemental strand, 8988539 - 8988423
Alignment:
Q  93 gaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatgaact 191  Q
    ||||||||||  |||  ||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||| ||||| ||||||||||||||||    
T  8988539 gaaccattgagtcactgatcaaatattaaactgataagaacaaatactacacttgatcttcgccaaaaggccaagaatggtataagttgaaagatgaact 8988440  T
Q  192 cggtgctgcttttatat 208  Q
    || |  |||||||||||    
T  8988439 cgcttatgcttttatat 8988423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 208
Target Start/End: Complemental strand, 9030486 - 9030366
Alignment:
Q  89 gtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatg 187  Q
    |||||| ||||||| ||||   |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||    
T  9030486 gtgtgacccattgagccacttctcaaatattaaattgataagaacagatactacacttgatcttagccaaaaggccaagaaaaatatgagttgaaagatg 9030387  T
Q  188 aactcggtgctgcttttatat 208  Q
    |||| | |  |||||||||||    
T  9030386 aacttgcttatgcttttatat 9030366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 8984766 - 8984661
Alignment:
Q  104 ccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatgaactcggtgctgctt 202  Q
    |||| |||||||||||||||| ||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||| | |  |||||    
T  8984766 ccactaatcaaatattaaactaataagaacaaatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaatatgaacttgcttatgctt 8984667  T
Q  203 ttatat 208  Q
    ||||||    
T  8984666 ttatat 8984661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 104 - 208
Target Start/End: Complemental strand, 9023520 - 9023415
Alignment:
Q  104 ccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatgaactcggtgctgctt 202  Q
    |||| ||||| |||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| || ||||| |  |||||    
T  9023520 ccactaatcagatattaaactaataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaagttggactcgcttatgctt 9023421  T
Q  203 ttatat 208  Q
    ||||||    
T  9023420 ttatat 9023415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 104 - 183
Target Start/End: Complemental strand, 43850122 - 43850042
Alignment:
Q  104 ccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaa 183  Q
    ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||    
T  43850122 ccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaaa 43850042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 104 - 190
Target Start/End: Complemental strand, 9008094 - 9008007
Alignment:
Q  104 ccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatgaac 190  Q
    |||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| | ||||||||    
T  9008094 ccactaatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagtttagagatgaac 9008007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 9020909 - 9020830
Alignment:
Q  115 atattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatgaactcg 193  Q
    |||||||| |||||||||||||||| |||||||||||||||||||||||| ||||| |||||| ||||||||||||||||    
T  9020909 atattaaattgataagaacagatactacacttgatcttagccaaaaggccgagaaatgtatgaattgaaagatgaactcg 9020830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 9016583 - 9016461
Alignment:
Q  90 tgtgaaccattgatccacaaatcaaatattaaact---gataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaaga 185  Q
    ||||| ||||||  |||| ||||| ||||||||||   ||||||||||||||| ||| |||||||||||||||||| | |  |||||||||||| |||||    
T  9016583 tgtgacccattgggccactaatcagatattaaactactgataagaacagatactacatttgatcttagccaaaaggtcgaataaggtatgagttaaaaga 9016484  T
Q  186 tgaactcggtgctgcttttatat 208  Q
    |||||||| |  |||||||||||    
T  9016483 tgaactcgcttatgcttttatat 9016461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 8992235 - 8992116
Alignment:
Q  90 tgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatga 188  Q
    ||||| ||||||  |||| ||||| ||||| |||| ||||||||| |||| ||||||||||||||||||||| |  ||||||| ||||||| ||||| ||    
T  8992235 tgtgacccattgggccactaatcagatattgaactcataagaacatatactacacttgatcttagccaaaagactgagaaaggcatgagttaaaagacga 8992136  T
Q  189 actcggtgctgcttttatat 208  Q
    ||||| |  |||||||||||    
T  8992135 actcgcttatgcttttatat 8992116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 10763903 - 10763978
Alignment:
Q  95 accattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaa 169  Q
    |||||||||||||| |||| |||||||||||||||||||| |||| |||||||||||||| |||||| || |||||    
T  10763903 accattgatccacatatcagatattaaactgataagaacatatactacacttgatcttagtcaaaagaccgagaaa 10763978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 19232445 - 19232504
Alignment:
Q  116 tattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtat 174  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||    
T  19232445 tattaaactgataagaacagatattacacttgatcttagccaaaaggccgagaaaggtat 19232504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 159
Target Start/End: Complemental strand, 35701962 - 35701906
Alignment:
Q  104 ccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaa 159  Q
    ||||| ||||||||||||||| |||| |||| |||| ||||||||||||||||||||    
T  35701962 ccacatatcaaatattaaactaataaaaacaaataccacacttgatcttagccaaaa 35701906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 6e-34; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 84 - 252
Target Start/End: Original strand, 10944413 - 10944581
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    |||||||||||||||||  |||||| || | ||||||||||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||  |    
T  10944413 atatcgtgtgaaccatttgtccacatataagatattaaactgataagaacagatactacacttgatcttagccaaaaggtcgagaaaggtatgagttaca 10944512  T
Q  183 agatgaactcggtgctgcttttatatcagacatcttctcagttgttttcgtgactgctcgatgtgggact 252  Q
    | |||| |||  |  |||||||||||| ||||| ||||| ||||||||| ||| | ||||||||||||||    
T  10944513 acatgagctc-ctattgcttttatatctgacatgttctcggttgttttcttgattcctcgatgtgggact 10944581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 41841166 - 41841270
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    ||||||||||| ||||||  ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  41841166 atatcgtgtgacccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaa 41841265  T
Q  183 agatg 187  Q
    |||||    
T  41841266 agatg 41841270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 84 - 182
Target Start/End: Complemental strand, 44879076 - 44878977
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    ||||| ||||| ||||||| ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  44879076 atatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaa 44878977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 84 - 182
Target Start/End: Original strand, 44880845 - 44880944
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    ||||| ||||| ||||||| ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  44880845 atatcatgtgacccattgagccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaa 44880944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 37682150 - 37682057
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatga 176  Q
    |||||||||| |||||||  ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||    
T  37682150 atatcgtgtggaccattggcccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaatgtatga 37682057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 40054405 - 40054312
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatga 176  Q
    ||||||| ||| ||||||  ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  40054405 atatcgtatgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 40054312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 42555097 - 42555198
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagataca-cacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    |||||||||||  |||||| ||||| |||||||||||||||||||| ||||||| |  ||||||||||||||||||||  ||||||||||||||||||||    
T  42555097 atatcgtgtgattcattgaaccacatatcaaatattaaactgataaaaacagattctgcacttgatcttagccaaaagatcaagaaaggtatgagttgaa 42555196  T
Q  183 ag 184  Q
    ||    
T  42555197 ag 42555198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 37679837 - 37679757
Alignment:
Q  95 accattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtat 174  Q
    |||||||  ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  37679837 accattggcccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtat 37679757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 96 - 159
Target Start/End: Complemental strand, 44582934 - 44582870
Alignment:
Q  96 ccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaa 159  Q
    ||||||| | ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  44582934 ccattgagctacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaa 44582870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 188
Target Start/End: Complemental strand, 42092093 - 42092009
Alignment:
Q  104 ccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaagatga 188  Q
    ||||| |||| |||||||||||||||||||| |||  |||||| || ||||| ||||||| |||||||||||||||| ||||||||    
T  42092093 ccacatatcagatattaaactgataagaacaaatattacacttaattttagc-aaaaggcaaagaaaggtatgagtttaaagatga 42092009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 184
Target Start/End: Original strand, 42220880 - 42220960
Alignment:
Q  104 ccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaaag 184  Q
    ||||| |||| |||||||||| ||||||| |||||| ||||||||||||||||||||| || | ||| ||||||||||||||    
T  42220880 ccacatatcagatattaaactaataagaa-agatactacacttgatcttagccaaaagaccgaaaaatgtatgagttgaaag 42220960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 183
Target Start/End: Original strand, 42872521 - 42872564
Alignment:
Q  140 acacttgatcttagccaaaaggccaagaaaggtatgagttgaaa 183  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  42872521 acacttaatcttagccaaaaggccgagaaaggtatgagttgaaa 42872564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 9e-33; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 84 - 210
Target Start/End: Original strand, 10795904 - 10796031
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    ||||||||||| ||||||   |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  10795904 atatcgtgtgacccattgggtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaa 10796003  T
Q  183 agatgaactcggtgctgcttttatatca 210  Q
    ||| || || | | ||||||||||||||    
T  10796004 agaagagctggcttctgcttttatatca 10796031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 84 - 210
Target Start/End: Original strand, 10791666 - 10791793
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    ||||| ||||| ||||||   |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  10791666 atatcatgtgacccattggatcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaa 10791765  T
Q  183 agatgaactcggtgctgcttttatatca 210  Q
    ||| ||  | | | ||||||||||||||    
T  10791766 agaagagttggcttctgcttttatatca 10791793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 103 - 176
Target Start/End: Complemental strand, 30521316 - 30521242
Alignment:
Q  103 tccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatga 176  Q
    |||||| |||| ||||||||||||||||||||||||| ||||||||||| |||||||||| | ||||||||||||    
T  30521316 tccacatatcagatattaaactgataagaacagatactacacttgatctcagccaaaaggtcgagaaaggtatga 30521242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 8875762 - 8875702
Alignment:
Q  104 ccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggcc 163  Q
    ||||| |||| |||||||| |||||||||||||||  ||||||||||||||||||||||||    
T  8875762 ccacatatcagatattaaattgataagaacagatattacacttgatcttagccaaaaggcc 8875702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 84 - 210
Target Start/End: Original strand, 50077213 - 50077340
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    ||||| ||||||||||||   |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  50077213 atatcatgtgaaccattggaacacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaa 50077312  T
Q  183 agatgaactcggtgctgcttttatatca 210  Q
    ||| || || | | ||||||||||||||    
T  50077313 agaagagctggcttctgcttttatatca 50077340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 84 - 184
Target Start/End: Original strand, 49106543 - 49106644
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    ||||||||||| ||||||  ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  49106543 atatcgtgtgatccattggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaa 49106642  T
Q  183 ag 184  Q
    ||    
T  49106643 ag 49106644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 84 - 187
Target Start/End: Original strand, 11652406 - 11652510
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    ||||||||||| ||||||  ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||    
T  11652406 atatcgtgtgacccattgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaaa 11652505  T
Q  183 agatg 187  Q
    |||||    
T  11652506 agatg 11652510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 84 - 183
Target Start/End: Original strand, 49108647 - 49108747
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    ||||||||||| |||||||  |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  49108647 atatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttgaa 49108746  T
Q  183 a 183  Q
    |    
T  49108747 a 49108747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 3461156 - 3461258
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    ||||||||||| |||||||  |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||    
T  3461156 atatcgtgtgacccattgagtcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgaattgaa 3461255  T
Q  183 aga 185  Q
    |||    
T  3461256 aga 3461258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 26984681 - 26984773
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatg 175  Q
    |||||||||| ||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  26984681 atatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 26984773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 175
Target Start/End: Original strand, 26998754 - 26998846
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatg 175  Q
    |||||||||| ||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  26998754 atatcgtgtggaccattggtccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatg 26998846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 21503771 - 21503706
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgat 148  Q
    ||||||||||| | ||||| ||||| |||| ||||||||||||||||||||||||| |||||||||    
T  21503771 atatcgtgtgacctattgagccacatatcagatattaaactgataagaacagatactacacttgat 21503706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 84 - 175
Target Start/End: Complemental strand, 48205924 - 48205832
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatg 175  Q
    ||||| ||| ||||| || |||||| || | |||||||| | |||||||||||||| |||||| |||||||| |||||||| |||||||||||    
T  48205924 atatcatgtaaaccaatggtccacatataagatattaaattaataagaacagatactacacttaatcttagctaaaaggccgagaaaggtatg 48205832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 5e-28; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 84 - 193
Target Start/End: Original strand, 1716465 - 1716576
Alignment:
Q  84 atatcgtgtgaaccatt-gatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttga 181  Q
    ||||||||||| ||||| |  ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |    
T  1716465 atatcgtgtgacccatttggaccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgagttaa 1716564  T
Q  182 aagatgaactcg 193  Q
    |||||| |||||    
T  1716565 aagatgcactcg 1716576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 84 - 183
Target Start/End: Complemental strand, 7525061 - 7524961
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatgagttgaa 182  Q
    ||||||||||| ||||||   |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||    
T  7525061 atatcgtgtgatccattggatcacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatgacttgaa 7524962  T
Q  183 a 183  Q
    |    
T  7524961 a 7524961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 176
Target Start/End: Complemental strand, 3643733 - 3643640
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggtatga 176  Q
    ||||||||||| ||| ||  ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  3643733 atatcgtgtgacccaatgggccacatatcagatattaaactgataagaacagatactacacttgatcttagccaaaaggccgagaaaggtatga 3643640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 172
Target Start/End: Complemental strand, 4103338 - 4103249
Alignment:
Q  84 atatcgtgtgaaccattgatccacaaatcaaatattaaactgataagaacagatac-acacttgatcttagccaaaaggccaagaaaggt 172  Q
    |||||||||| || ||||  ||||| |||| ||||||||||||||||||||||||| ||||||||||||| |||||| ||  ||||||||    
T  4103338 atatcgtgtggactattgggccacatatcagatattaaactgataagaacagatactacacttgatcttaaccaaaatgctgagaaaggt 4103249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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