View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5621_high_2 (Length: 601)
Name: NF5621_high_2
Description: NF5621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5621_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 300 - 579
Target Start/End: Original strand, 23595080 - 23595355
Alignment:
| Q |
300 |
acaattcatagaggaccgctacttcatcttttttatcttcaccgaactgatcaannnnnnnngtcatatgcacaaaaggttcttcaactccacccaatca |
399 |
Q |
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| T |
23595080 |
acaattcatagaggaccgccacttcatattttttatcttcaccgaactgatcaattttttttgtcat--gcacaaaaggttcttcaacaccacccaatca |
23595177 |
T |
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| Q |
400 |
aaactttttccttatcatttgtcacgcttaaattgtttggccctttattactcaaaccagccacagaattgtctacnnnnnnngtgtcatgtgcttagga |
499 |
Q |
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| T |
23595178 |
aaactttttccttatcatttgtcacgcttaaattgtttggccctttattactcaaagcaaccacacaattgtctac--aaaaagtgtcatgtgcttagga |
23595275 |
T |
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| Q |
500 |
gaaacacttgtttagatacatatctaaatttaaaatttttggacacattcatacaaatgcttttgtttttaaaaagaaat |
579 |
Q |
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| T |
23595276 |
gaaacacttgcttagatacatatctaaatttaaaatttttggacacattcatacaaatgcttttgtttttaaaaagaaat |
23595355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 53 - 285
Target Start/End: Original strand, 23594787 - 23595019
Alignment:
| Q |
53 |
catacaggagcgcaccaggatcaatcctagccgtctaaaccatctctaacaacctttaagatttacgtcacaaaacttggaaacggttatcgttctcctc |
152 |
Q |
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| T |
23594787 |
catacaggagcgcaccaggatcaatcctagccgtctaaaccatctctaacaacctttaagattcacgtcacaaaacttggaaacggttatcgttctcctc |
23594886 |
T |
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| Q |
153 |
agctatataaacgtggctccgtgtcacactccatatacactttcatttaccccaattttcacacagaatacannnnnnncatatactgacttgaacgttg |
252 |
Q |
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| T |
23594887 |
agctatataaatgtgattccgtgtcacactccatatacactttcatttaccctaattttcacatataatacatttttttcatatactgacttgaatgtcg |
23594986 |
T |
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| Q |
253 |
gagtgttaacgtgtttgatgacaccattcttct |
285 |
Q |
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| T |
23594987 |
aagtgttaacgtgtttgatgacaccattcttct |
23595019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 549 - 592
Target Start/End: Original strand, 23595360 - 23595403
Alignment:
| Q |
549 |
catacaaatgcttttgtttttaaaaagaaatagtttgatgatgt |
592 |
Q |
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| T |
23595360 |
catacaaatgcttttgtttttaaaaagaaatagtttgataatgt |
23595403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 24072561 - 24072529
Alignment:
| Q |
232 |
catatactgacttgaacgttggagtgttaacgt |
264 |
Q |
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| T |
24072561 |
catatactgacttgaacgttggagtgttaacgt |
24072529 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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