View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5621_low_1 (Length: 782)
Name: NF5621_low_1
Description: NF5621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5621_low_1 |
 | |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Original strand, 10592668 - 10593226
Alignment:
| Q |
18 |
caaccgaccaaaaatgcattaaacacatcataaaccgtctaaaccttgcttgttatgccaccattcatagccgaacacatttcagattttataatctgaa |
117 |
Q |
| |
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||||||||||||||| |||||| |||||||||||| ||| |||||||||||||||||||||| | || ||||| |||||||||||||||||||||||||| |
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| T |
10592668 |
caaccgaccaaaaatacattaaccacatcataaactgtccaaaccttgcttgttatgccaccgtccacagccggacacatttcagattttataatctgaa |
10592767 |
T |
|
| Q |
118 |
ctcatgcccaatattggttcatatgatataatttgaaatgtgcgcagattgcattaaaagttatgatttcatggtttggcatgttttttattatatactt |
217 |
Q |
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|||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| || ||| |
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| T |
10592768 |
ctcatgtccaatattggttc-tatgatataatttgaaatgtgcgcagattgcattaaaagttatgatttcatagtttgacatattttttatttgattctt |
10592866 |
T |
|
| Q |
218 |
cgaa-cttcttcttcagtacacaaaatagaaaa-atgtaatttgaagaannnnnnncccaaactaaaaagattgaatgactctagattgtgtaaattctt |
315 |
Q |
| |
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|||| |||||||||||| |||||||||| |||| || |||||||||||| |||||||||||||| ||||| | |||||||| ||||||||||| |
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| T |
10592867 |
cgaaccttcttcttcagcacacaaaataaaaaacatataatttgaagaattttcttcccaaactaaaaagtttgaagggctctagat--tgtaaattctt |
10592964 |
T |
|
| Q |
316 |
atagacaatctagagtctctccaaagtctttctgcttaaaattgacggtgcaaacaattat----atagtgttatattgtattgtgtctgatgtggaaca |
411 |
Q |
| |
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|||||||| |||||||||||||||| || || |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10592965 |
atagacaacctagagtctctccaaa---ttcctacttaaaattgacagtgcaaacaattataaacatagtgttatattgtattgtgtctgatgtggaaca |
10593061 |
T |
|
| Q |
412 |
ttagtaaatccaacaccaacatgatatagtggtaactttttgtcatgaaattagtctcaaatatcatc-aaaatcatttgtattgaataaaatgaaacca |
510 |
Q |
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||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | |
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| T |
10593062 |
ttagtaaat------ccaacatgatataatggtaactttttgtcatgaaattagtctcaaatatcatcaaaaatcatttgtattcaataaaatgaaatta |
10593155 |
T |
|
| Q |
511 |
attatatgaatccctacaatgtccgtgtattctagtctaaattaaaaattaaagatacatgacaaaataaa |
581 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10593156 |
attatacgaatccctacaatgtccgtgtattctagtctaaattaaaaattaaagatacatgacaaaataaa |
10593226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 205; Significance: 1e-111; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 554 - 782
Target Start/End: Complemental strand, 32120012 - 32119784
Alignment:
| Q |
554 |
aaaaattaaagatacatgacaaaataaaaagaaatagtgaaagagagacatggatacaatcataagcaatatgagacctaaagttatctttcattagagg |
653 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
32120012 |
aaaaattaaagatacatgacaaaataaaaagaaatagtgaaagagagacatggatacaatcataagcaatttgagacctaaagttatctttcattagagg |
32119913 |
T |
|
| Q |
654 |
aaccatatgagactgagttggctaggtatcattttgcaaggaacctgcaaagaccatttcccaaccattcttggaggaaccatgtacaacaaatagttac |
753 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||| |
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| T |
32119912 |
aaccatatgagactgagttggctaggtatcattttgcaaggaacctgcaaagaccatttcccaaccatcattggaggaaccatgtacagctaatagttac |
32119813 |
T |
|
| Q |
754 |
caatttgagatttcccaacctattgttct |
782 |
Q |
| |
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||||||| ||||||||||||||||||||| |
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| T |
32119812 |
caatttgcgatttcccaacctattgttct |
32119784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 615 - 714
Target Start/End: Complemental strand, 26572707 - 26572608
Alignment:
| Q |
615 |
ataagcaatatgagacctaaagttatctttcattagaggaaccatatgagactgagttggctaggtatcattttgcaaggaacctgcaaagaccatttcc |
714 |
Q |
| |
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||||||||| |||||||||| |||||||||||||||| |||| || |||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
26572707 |
ataagcaatttgagacctaatgttatctttcattagatgaacaatgtgagactgagttggctaggtattaatttgcaaggaacctgcaaagaccatttcc |
26572608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 465 - 586
Target Start/End: Complemental strand, 26577237 - 26577116
Alignment:
| Q |
465 |
gtctcaaatatcatcaaaatcatttgtattgaataaaatgaaaccaatt--atatgaatccctacaatgtccgtgtattctagtctaaattaaaaattaa |
562 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||| ||||||| |||||| ||| |||||| || |||| ||||||| ||||||||| || |||||| |
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| T |
26577237 |
gtctcaactatcatcaaaatcaattgtattgaatcaaatgaagccaattaaataagaatccatatgatgtatgtgtattttagtctaaa--aataattaa |
26577140 |
T |
|
| Q |
563 |
agatacatgacaaaataaaaagaa |
586 |
Q |
| |
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|||| ||||||||||||||||||| |
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| T |
26577139 |
agatgcatgacaaaataaaaagaa |
26577116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 186
Target Start/End: Complemental strand, 32120613 - 32120462
Alignment:
| Q |
37 |
taaacacatcataaaccgtctaaaccttgcttgttatgccac-cattcatagc-cgaacacatttcagattttataatctgaactcatgcccaatattgg |
134 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| ||||||| | | || || | ||| |||| | |||||||||| |||||||||| ||||||||| |
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|
| T |
32120613 |
taaacacaccataaaccatctaaaccttgcttgtaatgccactcgtccacagttctgacagatttaatattttataatttgaactcatgtccaatattga |
32120514 |
T |
|
| Q |
135 |
ttcatatgatataatttgaaatgtgcgcagattgcattaaaagttatgattt |
186 |
Q |
| |
|
| || ||||||||||| |||||||||| ||||| |||||| ||||||||| |
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| T |
32120513 |
tgcaggtgatataatttaaaatgtgcgcggattgtgttaaaaattatgattt |
32120462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 85; Significance: 4e-40; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 429 - 584
Target Start/End: Complemental strand, 38273573 - 38273420
Alignment:
| Q |
429 |
aacatgatatagtggtaactttttgtcatgaaattagtctcaaatatcatcaaaatcatttgtattgaataaaatgaaaccaattatatgaatccctaca |
528 |
Q |
| |
|
||||||||||||| || || || |||||||||||| | |||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| ||| | |
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|
| T |
38273573 |
aacatgatatagtagtcacgttctgtcatgaaatttgcctcaaacatcaccaaaatcatttgtattgaataaaatgaaaccaattatacgaatctctata |
38273474 |
T |
|
| Q |
529 |
atgtccgtgtattctagtctaaattaaaaattaaagatacatgacaaaataaaaag |
584 |
Q |
| |
|
||||| ||| ||||||| ||||| || |||||||||||||||||||||||||||| |
|
|
| T |
38273473 |
atgtctgtgcattctaggctaaa--aataattaaagatacatgacaaaataaaaag |
38273420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 427 - 581
Target Start/End: Complemental strand, 38271892 - 38271740
Alignment:
| Q |
427 |
ccaacatgatatagtggtaactttttgtcatgaaattagtctcaaatatcatcaaaatcatttgtattgaataaaatgaaaccaattatatgaatcccta |
526 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||| || |
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| T |
38271892 |
ccaacatgatataggagtcactttctgtcatgaaatttgtctcaaacatcatcaaaatcatttgtattgaataaaataaaaccaattacatgaatcctta |
38271793 |
T |
|
| Q |
527 |
caatgtccgtgtattctagtctaaattaaaaattaaagatacatgacaaaataaa |
581 |
Q |
| |
|
|||| | ||| | ||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
38271792 |
taatgccggtgaactctagtctaaa--aagaattaaagatacatgacaaaataaa |
38271740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 455 - 551
Target Start/End: Complemental strand, 38278078 - 38277976
Alignment:
| Q |
455 |
catgaaattagtctcaaatatcatcaaaatcatttgtat--tgaataaaatgaaaccaattatat----gaatccctacaatgtccgtgtattctagtct |
548 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| |
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|
| T |
38278078 |
catgaaatttgtctcaaacgtcatcaaaatcatttgtatattgaataaaatgaaacaaattatatatatgaatccctataatgtccgtgtattctagtct |
38277979 |
T |
|
| Q |
549 |
aaa |
551 |
Q |
| |
|
||| |
|
|
| T |
38277978 |
aaa |
38277976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 507 - 593
Target Start/End: Complemental strand, 38276936 - 38276852
Alignment:
| Q |
507 |
accaattatatgaatccctacaatgtccgtgtattctagtctaaattaaaaattaaagatacatgacaaaataaaaagaaatagtga |
593 |
Q |
| |
|
|||||| |||||||||| || ||||||| ||||||| | |||||| || ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
38276936 |
accaatcatatgaatccatataatgtccatgtattcaaatctaaa--aataattaaatatacatgacaaaataaaaagaaatagtga |
38276852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 508 - 609
Target Start/End: Complemental strand, 38279052 - 38278953
Alignment:
| Q |
508 |
ccaattatatgaatccctacaatgtccgtgtattctagtctaaattaaaaattaaagatacatgacaaaataaaaagaaatagtgaaagagagacatgga |
607 |
Q |
| |
|
||||||||||||||||||| | || |||||||||| |||||| || ||| |||||||||||| |||||||||||||||||| || ||||||||| || |
|
|
| T |
38279052 |
ccaattatatgaatccctatgacgttggtgtattctattctaaa--aataataaaagatacatgataaaataaaaagaaatagtaaaggagagacattga |
38278955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 427 - 487
Target Start/End: Complemental strand, 38270617 - 38270557
Alignment:
| Q |
427 |
ccaacatgatatagtggtaactttttgtcatgaaattagtctcaaatatcatcaaaatcat |
487 |
Q |
| |
|
||||||||||||||| || ||||| |||||||||||| |||||||| |||||||||||||| |
|
|
| T |
38270617 |
ccaacatgatatagtagtcactttctgtcatgaaatttgtctcaaacatcatcaaaatcat |
38270557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 27690461 - 27690415
Alignment:
| Q |
18 |
caaccgaccaaaaatgcattaaacacatcataaaccgtctaaacctt |
64 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||| ||||||| |
|
|
| T |
27690461 |
caaccgaccaaaaatgcattaaacacttcacaaaccgtccaaacctt |
27690415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 16490160 - 16490115
Alignment:
| Q |
19 |
aaccgaccaaaaatgcattaaacacatcataaaccgtctaaacctt |
64 |
Q |
| |
|
|||||||||||||| ||||||||||| || |||||||| ||||||| |
|
|
| T |
16490160 |
aaccgaccaaaaatacattaaacacaccacaaaccgtcaaaacctt |
16490115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 815690 - 815736
Alignment:
| Q |
18 |
caaccgaccaaaaatgcattaaacacatcataaaccgtctaaacctt |
64 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
815690 |
caaccgaccaaaaatgcattaaacacaccacaaaccgtctaaacctt |
815736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 50781628 - 50781584
Alignment:
| Q |
26 |
caaaaatgcattaaacacatcataaaccgtctaaaccttgcttgt |
70 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||| ||||| |
|
|
| T |
50781628 |
caaaaatgcattaaacacatcacaaaccgtccaaaccttacttgt |
50781584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 35990057 - 35990014
Alignment:
| Q |
18 |
caaccgaccaaaaatgcattaaacacatcataaaccgtctaaac |
61 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||| |||| |
|
|
| T |
35990057 |
caaccgaccaaaaatgcattaaacacaccacaaaccgtccaaac |
35990014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 28639978 - 28639932
Alignment:
| Q |
18 |
caaccgaccaaaaatgcattaaacacatcataaaccgtctaaacctt |
64 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||| || ||||||| |
|
|
| T |
28639978 |
caaccgaccaaaaatgcattaaacacaccacaaaccatccaaacctt |
28639932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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