View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5621_low_12 (Length: 250)
Name: NF5621_low_12
Description: NF5621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5621_low_12 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr5 (6 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 10593630 - 10593391
Alignment:
| Q |
11 |
cataggtaacagctagacccacaatgccttcaaagatcagaaaaattacactgagacacaattatgcccaacttttcattacacaggatgagtaagtttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10593630 |
cataggtaacagctagacccacaatgccttaaaagatcaaaaaaattacactgagacacaattatgcccaacttttcattacacaggatgagtaagtttt |
10593531 |
T |
|
| Q |
111 |
gatcgatatatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccat |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
10593530 |
gatcgatatatgattccaggtggaatcgatatcaagaatatcaaagtaaaggaaaatgtgatcaaagacgacatgtctaaactgaaacatatataaccat |
10593431 |
T |
|
| Q |
211 |
tccgtagcagcagcaatgttcaactttggccgagaatacc |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10593430 |
tccgtagcagcagcaatgttcaactttggccgagaatacc |
10593391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 3e-44; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 119 - 250
Target Start/End: Complemental strand, 14375686 - 14375559
Alignment:
| Q |
119 |
tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| ||||| ||||||||||| |||| |
|
|
| T |
14375686 |
tatgattccaggtggaatcgatatcaagaatatcaaagaaaaggcaaatgtgatcaaagacaacatatctaaacggaaac----ataaccattccatagc |
14375591 |
T |
|
| Q |
219 |
agcagcaatgttcaactttggccgagaatacc |
250 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |
|
|
| T |
14375590 |
agcagcaatgttgaactttggccgagaatacc |
14375559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 250
Target Start/End: Original strand, 41436323 - 41436450
Alignment:
| Q |
119 |
tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||| |||| ||||| | ||| | ||||||||||| |||| |
|
|
| T |
41436323 |
tatgattccaggtggaatcgatatcaagaatatcaaggaaaaggcaaatgtgatggaagacaacatatctaagcggaagc----ataaccattccatagc |
41436418 |
T |
|
| Q |
219 |
agcagcaatgttcaactttggccgagaatacc |
250 |
Q |
| |
|
|||| |||| || ||||||||||||||||||| |
|
|
| T |
41436419 |
agcaacaatattgaactttggccgagaatacc |
41436450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 119 - 250
Target Start/End: Original strand, 41449536 - 41449663
Alignment:
| Q |
119 |
tatgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | ||||||||| ||||| ||||| |||| ||||| | ||| | ||||||||||| |||| |
|
|
| T |
41449536 |
tatgattccaggtggaatcgatatcaagaatatcaaggaaaaggcaaacgtgatggaagacaacatatctaagcggaagc----ataaccattccatagc |
41449631 |
T |
|
| Q |
219 |
agcagcaatgttcaactttggccgagaatacc |
250 |
Q |
| |
|
||||||||| || ||||||||||||||||||| |
|
|
| T |
41449632 |
agcagcaatattgaactttggccgagaatacc |
41449663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 120 - 250
Target Start/End: Original strand, 14238453 - 14238579
Alignment:
| Q |
120 |
atgattccaggtggaatcgatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtagca |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| | |||||||||| |||| ||||| |||| ||||| | ||| ||||||||||| ||||| |
|
|
| T |
14238453 |
atgattccaggtggaatcgatatcaagaatgccaaggaaaaggcaaatatgatggaagacaacatatctaagcgtaaa----gataaccattccatagca |
14238548 |
T |
|
| Q |
220 |
gcagcaatgttcaactttggccgagaatacc |
250 |
Q |
| |
|
|||| |||||| || |||||||||||||||| |
|
|
| T |
14238549 |
gcagaaatgttgaaatttggccgagaatacc |
14238579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 14376964 - 14376914
Alignment:
| Q |
11 |
cataggtaacagctagacccacaatgccttcaaagatcagaaaaattacac |
61 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||||||||| |||| |
|
|
| T |
14376964 |
cataggtaacagctagaccagcaatgccttcaaaaatcagaaaaatgacac |
14376914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 41436186 - 41436230
Alignment:
| Q |
11 |
cataggtaacagctagacccacaatgccttcaaagatcagaaaaa |
55 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||||| |||| |
|
|
| T |
41436186 |
cataggtaacagctagaccagcaatgccttcaaaaatcaggaaaa |
41436230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 240
Target Start/End: Original strand, 32119103 - 32119221
Alignment:
| Q |
119 |
tatgattccaggtggaatc-gatatcaagaatatcaaagtaaaggcaaatgtgatcaaagacgacatgtctaaactgaaacatttataaccattccgtag |
217 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||||| |||| ||||| ||||||||||| |||| |||| || || || ||||||||||| ||| |
|
|
| T |
32119103 |
tatgattccaggtggattctgatatcaagaatatcaaagaaaagacaaatctgatcaaagacaacatatctatacggagac----ataaccattccatag |
32119198 |
T |
|
| Q |
218 |
cagcagcaatgttcaactttggc |
240 |
Q |
| |
|
||||||||||||| ||||||||| |
|
|
| T |
32119199 |
cagcagcaatgttgaactttggc |
32119221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 32118988 - 32119075
Alignment:
| Q |
40 |
tcaaagatcagaaaaattacact---gagacacaattatgcccaacttttcattacacaggatgagtaagttttgatcgatatatgat |
124 |
Q |
| |
|
||||| ||||||||||| ||||| |||| ||||||||||| ||||| ||| |||||| | |||||| ||||||| |||||||||| |
|
|
| T |
32118988 |
tcaaaaatcagaaaaatgacactaaggagagacaattatgcctaacttctcaatacacaagcagagtaaattttgattgatatatgat |
32119075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University