View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5621_low_13 (Length: 249)

Name: NF5621_low_13
Description: NF5621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5621_low_13
NF5621_low_13
[»] chr8 (19 HSPs)
chr8 (78-203)||(6748-6873)
chr8 (78-203)||(13865119-13865242)
chr8 (78-203)||(36906117-36906241)
chr8 (138-203)||(4734582-4734647)
chr8 (78-203)||(34272445-34272569)
chr8 (138-200)||(2474852-2474914)
chr8 (138-203)||(29611922-29611987)
chr8 (143-201)||(1942124-1942182)
chr8 (138-203)||(3404659-3404724)
chr8 (138-203)||(31297433-31297498)
chr8 (138-203)||(34304646-34304711)
chr8 (78-200)||(25033313-25033434)
chr8 (138-198)||(36102976-36103036)
chr8 (138-199)||(37659617-37659678)
chr8 (78-122)||(40985101-40985145)
chr8 (82-126)||(41866148-41866192)
chr8 (138-195)||(34349662-34349719)
chr8 (138-203)||(43733206-43733271)
chr8 (138-194)||(40999254-40999310)
[»] chr4 (32 HSPs)
chr4 (18-120)||(31187080-31187181)
chr4 (85-203)||(37756747-37756864)
chr4 (78-203)||(904127-904251)
chr4 (79-200)||(21296133-21296253)
chr4 (78-203)||(31529949-31530073)
chr4 (78-203)||(38317256-38317380)
chr4 (78-203)||(41363839-41363963)
chr4 (78-203)||(17873126-17873250)
chr4 (78-200)||(20533860-20533981)
chr4 (83-203)||(38365959-38366077)
chr4 (138-203)||(16535621-16535686)
chr4 (78-203)||(7182218-7182342)
chr4 (142-203)||(48830905-48830966)
chr4 (141-203)||(13270362-13270424)
chr4 (78-194)||(41844374-41844489)
chr4 (138-200)||(52594710-52594772)
chr4 (138-203)||(50641985-50642050)
chr4 (78-203)||(24279844-24279968)
chr4 (95-203)||(32948560-32948668)
chr4 (95-203)||(56504512-56504619)
chr4 (78-195)||(36151397-36151513)
chr4 (141-200)||(32651352-32651411)
chr4 (142-200)||(32060622-32060680)
chr4 (138-203)||(21730410-21730475)
chr4 (147-203)||(47669738-47669794)
chr4 (143-203)||(54806405-54806465)
chr4 (138-205)||(30669461-30669528)
chr4 (138-185)||(49404709-49404756)
chr4 (141-203)||(30765632-30765694)
chr4 (138-203)||(13269883-13269948)
chr4 (156-205)||(31187198-31187247)
chr4 (175-203)||(17622586-17622614)
[»] chr7 (19 HSPs)
chr7 (78-203)||(33406659-33406783)
chr7 (78-205)||(33810239-33810365)
chr7 (83-203)||(34652083-34652202)
chr7 (78-203)||(42620379-42620502)
chr7 (78-203)||(3571786-3571910)
chr7 (78-203)||(23620820-23620944)
chr7 (94-203)||(28437585-28437693)
chr7 (84-203)||(3658544-3658662)
chr7 (138-203)||(36747227-36747292)
chr7 (78-203)||(47276029-47276153)
chr7 (83-203)||(19644231-19644350)
chr7 (141-203)||(33113730-33113792)
chr7 (97-203)||(5968089-5968194)
chr7 (138-204)||(43778662-43778728)
chr7 (138-203)||(7667250-7667315)
chr7 (84-203)||(41002284-41002401)
chr7 (138-203)||(46449105-46449170)
chr7 (138-203)||(43188800-43188865)
chr7 (147-201)||(25335236-25335290)
[»] chr1 (33 HSPs)
chr1 (78-203)||(13255274-13255398)
chr1 (78-203)||(33991471-33991595)
chr1 (78-203)||(27499914-27500038)
chr1 (83-203)||(1523524-1523644)
chr1 (78-203)||(1688244-1688367)
chr1 (84-200)||(47905722-47905837)
chr1 (138-203)||(32295574-32295639)
chr1 (78-200)||(39889685-39889806)
chr1 (95-203)||(40707240-40707349)
chr1 (78-203)||(23871490-23871614)
chr1 (78-203)||(26757182-26757306)
chr1 (144-203)||(42488719-42488778)
chr1 (95-203)||(2925978-2926085)
chr1 (138-200)||(30538835-30538897)
chr1 (79-203)||(51246591-51246714)
chr1 (138-203)||(42162139-42162204)
chr1 (138-203)||(43572038-43572102)
chr1 (86-204)||(15463749-15463866)
chr1 (138-201)||(938324-938387)
chr1 (138-201)||(50247527-50247590)
chr1 (138-203)||(7401613-7401678)
chr1 (78-201)||(12293742-12293864)
chr1 (150-203)||(14152630-14152683)
chr1 (138-203)||(38794900-38794965)
chr1 (138-203)||(17675128-17675193)
chr1 (95-203)||(17688268-17688377)
chr1 (143-203)||(13061491-13061551)
chr1 (138-203)||(26940536-26940601)
chr1 (78-203)||(8156365-8156490)
chr1 (140-203)||(896583-896646)
chr1 (84-130)||(50476540-50476586)
chr1 (138-203)||(11017529-11017594)
chr1 (146-203)||(28773473-28773530)
[»] chr5 (20 HSPs)
chr5 (79-203)||(41694907-41695030)
chr5 (78-203)||(35700990-35701114)
chr5 (78-201)||(26149535-26149657)
chr5 (78-203)||(38928729-38928853)
chr5 (138-203)||(1658107-1658172)
chr5 (99-203)||(38302400-38302504)
chr5 (138-203)||(10295413-10295478)
chr5 (144-205)||(27480262-27480323)
chr5 (138-203)||(41638285-41638350)
chr5 (78-203)||(2020911-2021034)
chr5 (95-203)||(4649031-4649138)
chr5 (144-200)||(35868766-35868822)
chr5 (95-203)||(32760687-32760794)
chr5 (78-203)||(17092828-17092951)
chr5 (138-187)||(25026868-25026917)
chr5 (84-203)||(37508424-37508543)
chr5 (95-200)||(38120219-38120323)
chr5 (138-202)||(15739460-15739525)
chr5 (162-203)||(41923108-41923149)
chr5 (138-194)||(25598872-25598928)
[»] chr3 (31 HSPs)
chr3 (83-203)||(3043150-3043269)
chr3 (83-203)||(24242124-24242243)
chr3 (95-203)||(49683045-49683152)
chr3 (138-203)||(33982805-33982870)
chr3 (78-203)||(30131913-30132037)
chr3 (78-203)||(36796353-36796477)
chr3 (78-203)||(44412182-44412305)
chr3 (138-203)||(23163454-23163519)
chr3 (78-205)||(38526081-38526207)
chr3 (78-203)||(41962004-41962126)
chr3 (138-203)||(55439514-55439579)
chr3 (83-205)||(17642518-17642638)
chr3 (78-203)||(49860766-49860890)
chr3 (141-203)||(34306077-34306139)
chr3 (138-200)||(46312507-46312569)
chr3 (83-203)||(47714705-47714823)
chr3 (138-203)||(43237221-43237286)
chr3 (78-203)||(45555563-45555687)
chr3 (138-203)||(43007582-43007647)
chr3 (78-203)||(47789473-47789597)
chr3 (138-197)||(31178332-31178391)
chr3 (95-203)||(39499125-39499235)
chr3 (145-203)||(42583364-42583422)
chr3 (138-203)||(38515181-38515245)
chr3 (89-200)||(46017161-46017269)
chr3 (78-117)||(27921977-27922016)
chr3 (148-203)||(29623168-29623223)
chr3 (78-113)||(33281733-33281768)
chr3 (138-197)||(47434404-47434463)
chr3 (78-113)||(52620852-52620887)
chr3 (138-172)||(2420632-2420666)
[»] chr2 (30 HSPs)
chr2 (78-205)||(18018624-18018749)
chr2 (78-203)||(30312432-30312556)
chr2 (78-199)||(4041898-4042018)
chr2 (78-203)||(8555803-8555927)
chr2 (83-203)||(1725840-1725959)
chr2 (95-203)||(36567322-36567429)
chr2 (138-203)||(18826318-18826383)
chr2 (83-205)||(10165343-10165464)
chr2 (79-203)||(25960638-25960761)
chr2 (138-203)||(12964058-12964123)
chr2 (138-203)||(44137082-44137147)
chr2 (78-176)||(40357414-40357511)
chr2 (138-203)||(3119936-3120001)
chr2 (138-203)||(38023531-38023596)
chr2 (138-203)||(44020284-44020349)
chr2 (78-203)||(8410957-8411081)
chr2 (138-205)||(8991049-8991116)
chr2 (138-205)||(18561937-18562004)
chr2 (78-203)||(18780312-18780438)
chr2 (78-203)||(19382808-19382931)
chr2 (83-196)||(32243412-32243524)
chr2 (95-203)||(3038990-3039099)
chr2 (78-199)||(13765966-13766085)
chr2 (138-197)||(6711918-6711977)
chr2 (142-200)||(14008417-14008475)
chr2 (138-203)||(38293814-38293884)
chr2 (138-203)||(31550335-31550400)
chr2 (95-176)||(31899387-31899467)
chr2 (147-200)||(725888-725941)
chr2 (87-115)||(43139883-43139911)
[»] chr6 (13 HSPs)
chr6 (78-203)||(26574422-26574546)
chr6 (138-203)||(24734812-24734877)
chr6 (84-203)||(29241866-29241984)
chr6 (138-203)||(1029223-1029288)
chr6 (138-203)||(14275916-14275981)
chr6 (138-203)||(4910001-4910066)
chr6 (138-205)||(34914555-34914622)
chr6 (83-203)||(5825263-5825381)
chr6 (138-199)||(31345456-31345517)
chr6 (95-203)||(26481175-26481278)
chr6 (78-176)||(23095155-23095252)
chr6 (160-203)||(15615597-15615640)
chr6 (83-113)||(13380560-13380590)
[»] scaffold0952 (1 HSPs)
scaffold0952 (95-203)||(3715-3823)
[»] scaffold1562 (1 HSPs)
scaffold1562 (78-203)||(68-194)
[»] scaffold1158 (1 HSPs)
scaffold1158 (78-203)||(2399-2525)
[»] scaffold0028 (1 HSPs)
scaffold0028 (78-203)||(35482-35605)
[»] scaffold0059 (2 HSPs)
scaffold0059 (138-200)||(67830-67892)
scaffold0059 (138-200)||(75935-75997)
[»] scaffold0013 (1 HSPs)
scaffold0013 (138-200)||(107765-107827)
[»] scaffold0636 (1 HSPs)
scaffold0636 (138-200)||(8334-8396)
[»] scaffold0026 (1 HSPs)
scaffold0026 (78-130)||(74717-74769)


Alignment Details
Target: chr8 (Bit Score: 69; Significance: 4e-31; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 6873 - 6748
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||||||||||||||  |||||||||||||||||||||| ||||| |||| ||       |||||||||||||||||||||||||||   |||||||||     
T  6873 cccctcaaaaccctcccccaatacaatttttgagtttccccaaatgagggagatttttttattatgagtaaaaaattaacctccaaagctctctcctccc 6774  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  6773 aatgtcttctatttcttccacttgct 6748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 13865119 - 13865242
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| || |||||||||||||       |||||||||||||||||||||| |||| |||| ||||||     
T  13865119 ccccccaaaaccctcccccaatacaatttttgagttccc-caaataagggggatttttt-attatgagtaaaaaattaaccttcaaagtcctttcctccg 13865216  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  13865217 aatgtcttctatttcttccacttgct 13865242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 36906241 - 36906117
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| || ||||| |||||||       |||| ||||||||||||||||||||||  ||||||||||     
T  36906241 ccccccaaaaccctcccccaatacaatttttgagttcccccaaatgagggggatttttt-attacgagtaaaaaattaacctccaaagccctctcctccc 36906143  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  36906142 aatgtcttctatttcttccacttgct 36906117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 4734582 - 4734647
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  4734582 attatgagtaaaaaattaacctccaaaaccctctcctcccaatgtcttctatttcttccacttgct 4734647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 34272569 - 34272445
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||| ||  |||||||||||||||||||||| ||||| |||||||       ||||||||||||| |||||||||||||  |||||||||      
T  34272569 ccccccaaaaccttcccccaatacaatttttgagtttccccaaatgagggggatttttt-attatgagtaaaagattaacctccaaagccctctcctctc 34272471  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  34272470 aatgtcttctatttcttccacttgct 34272445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 2474852 - 2474914
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccactt 200  Q
    ||||||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||    
T  2474852 attatgagtaaaaaattaatctccaaaaccctctcctcccaatgtcttctatttcttccactt 2474914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 29611987 - 29611922
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||  |||||||||| |||||||| |||||||||||||||||    
T  29611987 attatgagtaaaaaattaacctccaaagccctctcctcccaatgtcttatatttcttccacttgct 29611922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 1942124 - 1942182
Alignment:
Q  143 gagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttg 201  Q
    ||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  1942124 gagtaaaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccacttg 1942182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 3404659 - 3404724
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||| |||||||||||||| |||||||  | |||||||||||||||||||||||||||||||||||    
T  3404659 attaagagtaaaaaattaatctccaaagccttctcctcctaatgtcttctatttcttccacttgct 3404724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 31297433 - 31297498
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||| ||||  | |||||||| ||||||||||||||||||||||||||    
T  31297433 attatgagtaaaaaattaaccttcaaagccatctcctcccaatgtcttctatttcttccacttgct 31297498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 34304711 - 34304646
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||| ||||  |||||| || |||||||||||||||||||||||||||    
T  34304711 attatgagtaaaaaattaaccttcaaagccctctcatcttaatgtcttctatttcttccacttgct 34304646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 25033434 - 25033313
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| || ||||| |||  ||       |||||||||||||||||||||||||||   |||||||||     
T  25033434 ccccccaaaaccctcccccaatacaatttttgagttcccccaaatgaggatgatttttt-attatgagtaaaaaattaacctccaaagctctctcctccc 25033336  T
Q  178 aatgtcttctatttcttccactt 200  Q
     ||||||||||||||||||||||    
T  25033335 gatgtcttctatttcttccactt 25033313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 36102976 - 36103036
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccac 198  Q
    |||||||||||||||||||||||||||  ||||||| || |||||||||||||||||||||    
T  36102976 attatgagtaaaaaattaacctccaaagccctctccacccaatgtcttctatttcttccac 36103036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 37659617 - 37659678
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccact 199  Q
    ||||| |||||||||||||| ||||||  |||||||||| ||||||||||||||||||||||    
T  37659617 attattagtaaaaaattaacatccaaagccctctcctcccaatgtcttctatttcttccact 37659678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 40985101 - 40985145
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaat 122  Q
    ||||||||||||||| |||||||||||||||||||| || |||||    
T  40985101 cccctcaaaaccctcctccaatacaatttttgagttcccccaaat 40985145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 41866148 - 41866192
Alignment:
Q  82 tcaaaaccctcttccaatacaatttttgagtttccacaaataagg 126  Q
    ||||||||||| ||||||||||||||| ||||||| |||||||||    
T  41866148 tcaaaaccctcctccaatacaattttttagtttccccaaataagg 41866192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 34349719 - 34349662
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttc 195  Q
    |||||||||||||||||||| ||||||  |||||| ||| ||||| || |||||||||    
T  34349719 attatgagtaaaaaattaacatccaaagccctctcatcccaatgttttttatttcttc 34349662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 43733206 - 43733271
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||||| |||||| |||||| | |||  |||||||| | ||||||||||||||||||| ||||||    
T  43733206 attatgaataaaaagttaacccctaaagccctctccttccaatgtcttctatttcttcctcttgct 43733271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 40999254 - 40999310
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttctt 194  Q
    ||||||| ||| ||||||| ||||||||  ||||||||  |||||||||||||||||    
T  40999254 attatgaataataaattaatctccaaaactctctcctctcaatgtcttctatttctt 40999310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 31187080 - 31187181
Alignment:
Q  18 tcccttgcacggaagtttgttgcatggacttatacaagctacgtgacatttgtgtattctcccctcaaaaccctcttccaatacaatttttgagtttcca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | | ||| |||||  |||||||||||||||| |||||    
T  31187080 tcccttgcacggaagtttgttgcatggacttatacaagctacgtggcatttgtgtattctcctc-cgaaatcctctctcaatacaatttttgagattcca 31187178  T
Q  118 caa 120  Q
    |||    
T  31187179 caa 31187181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 85 - 203
Target Start/End: Original strand, 37756747 - 37756864
Alignment:
Q  85 aaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtct 184  Q
    |||||||| ||||| |||||||||||||| || ||||| |||||||       |||||||||||||||||||||||||||  |||||||||| |||||||    
T  37756747 aaaccctcctccaacacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaaattaacctccaaagccctctcctcccaatgtct 37756845  T
Q  185 tctatttcttccacttgct 203  Q
    |||||||||||||||||||    
T  37756846 tctatttcttccacttgct 37756864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 904251 - 904127
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||   |||||||||||||||||| || ||||| |||||||       |||||||||||||||||||||||||||  ||||||||||     
T  904251 ccccccaaaaccctccctcaatacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaaattaacctccaaagccctctcctccg 904153  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  904152 aatgtcttctatttcttccacttgct 904127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 200
Target Start/End: Original strand, 21296133 - 21296253
Alignment:
Q  79 ccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctccta 178  Q
    ||||||||||||||  |||||||||||||||||||  | |||||||||||||       |||||||||||||||||||||| |||| |||| |||||| |    
T  21296133 ccctcaaaaccctcccccaatacaatttttgagttctcccaaataagggggatttttt-attatgagtaaaaaattaacctacaaagtcctttcctccca 21296231  T
Q  179 atgtcttctatttcttccactt 200  Q
    ||||||||||||||||||||||    
T  21296232 atgtcttctatttcttccactt 21296253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 31530073 - 31529949
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| || ||||| ||| |||       |||||||||||||||||||||||||||| ||||||||||     
T  31530073 ccccccaaaaccctcccccaatacaatttttgagttcccccaaatgaggaggatttttt-attatgagtaaaaaattaacctccaaaaccctctcctccc 31529975  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
     |||||||||||||||||||||||||    
T  31529974 gatgtcttctatttcttccacttgct 31529949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 38317256 - 38317380
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| || ||||| ||| |||       |||||||||||||||||||||||||||  ||||||||||     
T  38317256 ccccccaaaaccctcccccaatacaatttttgagttcccccaaatgaggaggatttttt-attatgagtaaaaaattaacctccaaagccctctcctccc 38317354  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  38317355 aatgtcttctatttcttccacttgct 38317380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 41363839 - 41363963
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| || || || |||||||       |||||||||||||||||||||||||||  ||||||||||     
T  41363839 ccccccaaaaccctcccccaatacaatttttgagttcccccacatgagggggatttttt-attatgagtaaaaaattaacctccaaagccctctcctccc 41363937  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  41363938 aatgtcttctatttcttccacttgct 41363963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 17873250 - 17873126
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaa-attaacctccaaaatcctctcctcc 176  Q
    |||| ||||||||||  ||||||||||||||||||| || |||||||||||||       |||||||||||||| |||||||||||||  ||||||||||    
T  17873250 ccccccaaaaccctcc-ccaatacaatttttgagttcccccaaataagggggatttttt-attatgagtaaaaagattaacctccaaagccctctcctcc 17873153  T
Q  177 taatgtcttctatttcttccacttgct 203  Q
     ||||||||||||||||||||||||||    
T  17873152 caatgtcttctatttcttccacttgct 17873126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 200
Target Start/End: Complemental strand, 20533981 - 20533860
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| || ||||| |||| ||       ||||||||||||||||||||||||||| || ||||||||     
T  20533981 ccccccaaaaccctcccccaatacaatttttgagttcccccaaatgagggagatttttt-attatgagtaaaaaattaacctccaaagtcttctcctccc 20533883  T
Q  178 aatgtcttctatttcttccactt 200  Q
    |||||||||||||||||||||||    
T  20533882 aatgtcttctatttcttccactt 20533860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 38366077 - 38365959
Alignment:
Q  83 caaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgt 182  Q
    ||||||||||  ||||||||||||||||||| || ||||| || ||||       ||||||||||||||||||||||||||| ||||||||| | |||||    
T  38366077 caaaaccctcccccaatacaatttttgagttccc-caaatgagagggatttttt-attatgagtaaaaaattaacctccaaagtcctctccttccaatgt 38365980  T
Q  183 cttctatttcttccacttgct 203  Q
    |||||||||||||||||||||    
T  38365979 cttctatttcttccacttgct 38365959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 16535686 - 16535621
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  16535686 attatgagtaaaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccacttgct 16535621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 7182218 - 7182342
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| || ||||| |||||||       ||||||||||||| |||||||||||||   ||||||||      
T  7182218 ccccccaaaaccctcccccaatacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaagattaacctccaaagctctctcctctc 7182316  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  7182317 aatgtcttctatttcttccacttgct 7182342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 203
Target Start/End: Original strand, 48830905 - 48830966
Alignment:
Q  142 tgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  48830905 tgagtaaaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccacttgct 48830966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 13270362 - 13270424
Alignment:
Q  141 atgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||  ||||| |||| ||||||||||||||||||||||||||    
T  13270362 atgagtaaaaaattaacctccaaagccctctactcccaatgtcttctatttcttccacttgct 13270424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 78 - 194
Target Start/End: Complemental strand, 41844489 - 41844374
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  | ||||||||||||||||| || ||||| |||| ||       |||||||||||||||||||||||||||  ||||||||||     
T  41844489 ccccccaaaaccctcccctaatacaatttttgagttcccccaaatgagggagatttttt-attatgagtaaaaaattaacctccaaagccctctcctccc 41844391  T
Q  178 aatgtcttctatttctt 194  Q
    |||||||||||||||||    
T  41844390 aatgtcttctatttctt 41844374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 52594710 - 52594772
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccactt 200  Q
    |||||||||||||||||||||||||||| |||||||| | |||||||||||||||||| ||||    
T  52594710 attatgagtaaaaaattaacctccaaaaccctctccttccaatgtcttctatttcttcaactt 52594772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 50642050 - 50641985
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||| |  |||||||| | ||||||||||||||||||||||||||    
T  50642050 attatgagtaaaaaattaacctccacatccctctccttccaatgtcttctatttcttccacttgct 50641985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 24279968 - 24279844
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  |||||||||||||||||||||  ||||| | ||| |       |||||||||||||||||||| ||||||  ||||||||||     
T  24279968 ccccccaaaaccctcccccaatacaatttttgagtttcgccaaatgaaggg-aattttttattatgagtaaaaaattaacttccaaagccctctcctccc 24279870  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    |||||||| |||| ||||||||||||    
T  24279869 aatgtcttttattccttccacttgct 24279844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 32948560 - 32948668
Alignment:
Q  95 ccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttctt 194  Q
    ||||||||||||||||||| || ||||| | |||||       ||||||||||||| |||||||  ||||| |||||||| | |||||||||||||||||    
T  32948560 ccaatacaatttttgagttccctcaaatgaaggggatttttttattatgagtaaaagattaaccatcaaaaccctctccttccaatgtcttctatttctt 32948659  T
Q  195 ccacttgct 203  Q
     ||||||||    
T  32948660 tcacttgct 32948668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 56504512 - 56504619
Alignment:
Q  95 ccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttctt 194  Q
    ||||||||||||||||||| || ||||| |||| ||       ||||||  |||||||||||||||||||  |||||||||| |||||||||||||||||    
T  56504512 ccaatacaatttttgagttcccccaaatgagggagattttgt-attatgtataaaaaattaacctccaaagccctctcctcccaatgtcttctatttctt 56504610  T
Q  195 ccacttgct 203  Q
     ||||||||    
T  56504611 gcacttgct 56504619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 78 - 195
Target Start/End: Original strand, 36151397 - 36151513
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||| ||||  ||||||||||||||||||| || ||||| | |||||       |||||||||||||||||||||||||||  |||| |||||     
T  36151397 ccccccaaaatcctcccccaatacaatttttgagttcccccaaattaaggggatttttt-attatgagtaaaaaattaacctccaaagccctcccctccc 36151495  T
Q  178 aatgtcttctatttcttc 195  Q
    |||| |||||||||||||    
T  36151496 aatggcttctatttcttc 36151513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 32651352 - 32651411
Alignment:
Q  141 atgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccactt 200  Q
    |||||||||| |||||||||||||  |||||||||| || |||||||| |||||||||||    
T  32651352 atgagtaaaagattaacctccaaagccctctcctcccaacgtcttctaattcttccactt 32651411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 200
Target Start/End: Complemental strand, 32060680 - 32060622
Alignment:
Q  142 tgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccactt 200  Q
    ||||||||||| |||||||||||  |||||||||| |||||||||||||| ||| ||||    
T  32060680 tgagtaaaaaactaacctccaaagccctctcctcccaatgtcttctatttattctactt 32060622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 21730410 - 21730475
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||| |||||||||||||||| |||| | ||||||||  ||| ||||||||||||| ||||||||    
T  21730410 attataagtaaaaaattaaccttcaaagttctctcctctcaatatcttctatttctttcacttgct 21730475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 47669794 - 47669738
Alignment:
Q  147 aaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||| |||  |||||||||| ||| |||||||||| |||||||||||    
T  47669794 aaaaaattaacctcaaaagccctctcctcccaatatcttctattttttccacttgct 47669738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 54806465 - 54806405
Alignment:
Q  143 gagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||||||||| ||||| ||||  |||||||||| |||||||| |||| ||||||||||||    
T  54806465 gagtaaaaaatgaaccttcaaagccctctcctcccaatgtcttttattccttccacttgct 54806405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 30669528 - 30669461
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgcttc 205  Q
    ||||||| |||||||||||||  |||| | || |||||||||||| ||||||||| | ||||||||||    
T  30669528 attatgaataaaaaattaacccacaaagttctatcctcctaatgtattctatttcattcacttgcttc 30669461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 185
Target Start/End: Original strand, 49404709 - 49404756
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtctt 185  Q
    |||||||||||||||||||||||||||   ||||||||| ||||||||    
T  49404709 attatgagtaaaaaattaacctccaaagctctctcctccaaatgtctt 49404756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 30765694 - 30765632
Alignment:
Q  141 atgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||| |||||||||||||  ||||||| |||| ||  ||||| ||||||||||||||||||||    
T  30765694 atgaataaaaaattaaccctcaaaatcatctcatctcaatgttttctatttcttccacttgct 30765632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 13269948 - 13269883
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||  ||||||||||||| ||||  |||||| ||   |||||||||||||||||||||||||    
T  13269948 attatgaagaaaaaattaaccttcaaagccctctcttcacgatgtcttctatttcttccacttgct 13269883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 31187198 - 31187247
Alignment:
Q  156 acctccaaaatcctctcctcctaatgtcttctatttcttccacttgcttc 205  Q
    |||||||||  |||||||||||||||||||  |||||||||| |||||||    
T  31187198 acctccaaagccctctcctcctaatgtctttaatttcttccagttgcttc 31187247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 203
Target Start/End: Original strand, 17622586 - 17622614
Alignment:
Q  175 cctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||||    
T  17622586 cctaatgtcttctatttcttccacttgct 17622614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 33406659 - 33406783
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||| ||||||||||||||||||| || ||||| |||||||       |||||||||||||||||||||| ||||  ||||||||||     
T  33406659 ccccccaaaaccctctcccaatacaatttttgagttccctcaaatgagggggatttttt-attatgagtaaaaaattaaccttcaaagccctctcctccc 33406757  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  33406758 aatgtcttctatttcttccacttgct 33406783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 33810239 - 33810365
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||||||||||||||  |||||||||||||||||||  | ||||| |||||||        ||||||||||||||||||||||||||| ||||||||||     
T  33810239 cccctcaaaaccctcccccaatacaatttttgagttctcccaaatgagggggatattttc-ttatgagtaaaaaattaacctccaaaaccctctcctccc 33810337  T
Q  178 aatgtcttctatttcttccacttgcttc 205  Q
    ||||||||||||||||||||||| ||||    
T  33810338 aatgtcttctatttcttccacttacttc 33810365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 34652083 - 34652202
Alignment:
Q  83 caaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgt 182  Q
    ||||||||||  ||||||||||||||||||| || ||||| |||||||       ||||| |||||||||||||||||||||  |||||||||| |||||    
T  34652083 caaaaccctcccccaatacaatttttgagttcccccaaatgagggggatttttt-attataagtaaaaaattaacctccaaagccctctcctcccaatgt 34652181  T
Q  183 cttctatttcttccacttgct 203  Q
    |||||||||||||||||||||    
T  34652182 cttctatttcttccacttgct 34652202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 42620379 - 42620502
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||||||||| ||||  ||||||||||||||||||| || ||||| ||||| |       |||||||||||||||||||||||||||  ||||||||||     
T  42620379 cccctcaaaatcctcccccaatacaatttttgagttccc-caaatgagggg-aattttttattatgagtaaaaaattaacctccaaagccctctcctccc 42620476  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  42620477 aatgtcttctatttcttccacttgct 42620502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 3571786 - 3571910
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||   |||||||||||||||||| || ||||| |||||||       ||||||||||||||||||||||||||| ||||||| | |     
T  3571786 ccccccaaaaccctcccgcaatacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaaattaacctccaaagtcctctctttcc 3571884  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  3571885 aatgtcttctatttcttccacttgct 3571910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 23620820 - 23620944
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  | ||||||||||||||||| || ||||| |||||||       ||||| |||||||||||||||||||||  ||||||||||     
T  23620820 ccccccaaaaccctccccaaatacaatttttgagttcccccaaatgagggggatttttt-attataagtaaaaaattaacctccaaagccctctcctccc 23620918  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  23620919 aatgtcttctatttcttccacttgct 23620944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 94 - 203
Target Start/End: Original strand, 28437585 - 28437693
Alignment:
Q  94 tccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttct 193  Q
    |||||||||||||||||||| || ||||| |||||||       |||||||||||||||||||||||||||  |||||||||| |||||||| |||||||    
T  28437585 tccaatacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaaattaacctccaaagccctctcctcccaatgtcttttatttct 28437683  T
Q  194 tccacttgct 203  Q
    ||||||||||    
T  28437684 tccacttgct 28437693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 203
Target Start/End: Original strand, 3658544 - 3658662
Alignment:
Q  84 aaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtc 183  Q
    |||||||||  ||||||||||||||||||| || ||||| |||||||       ||||||||||||||||||||| |||||   ||||||||| ||||||    
T  3658544 aaaaccctcccccaatacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaaattaacccccaaagctctctcctcccaatgtc 3658642  T
Q  184 ttctatttcttccacttgct 203  Q
    ||||||||||||||||||||    
T  3658643 ttctatttcttccacttgct 3658662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 36747292 - 36747227
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||    
T  36747292 attatgagtaaaaaattaacctccaaaaccctctccttccaatgtcttctatttcttccacttgct 36747227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 47276029 - 47276153
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||| ||||  |||||| |||||||||||| || ||||| |||||||       ||||| |||||||||||||||||||||  ||||||||||     
T  47276029 ccccccaaaatcctcccccaatataatttttgagttcccccaaatgagggggatttttt-attataagtaaaaaattaacctccaaagccctctcctcca 47276127  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||| |||||    
T  47276128 aatgtcttctatttcttccatttgct 47276153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 19644350 - 19644231
Alignment:
Q  83 caaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgt 182  Q
    |||||||||| |||||||||||||||||||| ||  ||||||||||||       ||||||| |||||||||||||||||||   ||||| ||  |||||    
T  19644350 caaaaccctcatccaatacaatttttgagttcccctaaataagggggatttttt-attatgattaaaaaattaacctccaaagctctctcatctcaatgt 19644252  T
Q  183 cttctatttcttccacttgct 203  Q
    ||| |||||||||||||||||    
T  19644251 cttgtatttcttccacttgct 19644231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 203
Target Start/End: Original strand, 33113730 - 33113792
Alignment:
Q  141 atgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||||| ||||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  33113730 atgagtagaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccacttgct 33113792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 5968089 - 5968194
Alignment:
Q  97 aatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttcc 196  Q
    ||||||||||||||||| || ||||| |||||||        ||||||||||||||||||||||||||   || |||||| |||||||||||||||||||    
T  5968089 aatacaatttttgagttcccccaaatgagggggattttttg-ttatgagtaaaaaattaacctccaaagcgctttcctcccaatgtcttctatttcttcc 5968187  T
Q  197 acttgct 203  Q
    |||||||    
T  5968188 acttgct 5968194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 204
Target Start/End: Original strand, 43778662 - 43778728
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgctt 204  Q
    ||||||||||||||||||||||||| |  ||||| || | |||||||||||||||||||||||||||    
T  43778662 attatgagtaaaaaattaacctccatagccctcttcttccaatgtcttctatttcttccacttgctt 43778728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 7667250 - 7667315
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||| || ||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||    
T  7667250 attattaggaaaaaattaacctccaaagctctctcctcccaatgtcttctatttcttccacttgct 7667315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 203
Target Start/End: Original strand, 41002284 - 41002401
Alignment:
Q  84 aaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtc 183  Q
    |||||||||  |||||| |||||||||||| || ||||| ||||| |       ||||||||||||||||||||||||| || |||||||| |  |||||    
T  41002284 aaaaccctcccccaatataatttttgagttcccccaaatgagggg-aattttttattatgagtaaaaaattaacctccagaaccctctccttccgatgtc 41002382  T
Q  184 ttctatttcttccacttgct 203  Q
     |||||||||||||||||||    
T  41002383 -tctatttcttccacttgct 41002401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 46449170 - 46449105
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||| ||||| |||||| ||| ||| | || |||||||||||||||||    
T  46449170 attatgagtaaaaaattaaccttcaaaaccctctcttcccaatattttttatttcttccacttgct 46449105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 43188865 - 43188800
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||| | |||||||||  ||||| |  |||||||||| ||||||    
T  43188865 attatgagtaaaaaattaacctccaagaccctctcctctcaatgtttcatatttcttccccttgct 43188800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 25335290 - 25335236
Alignment:
Q  147 aaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttg 201  Q
    ||||||||||||||||||| |||||| ||||||| | |||||||| || ||||||    
T  25335290 aaaaaattaacctccaaaaccctctcatcctaatatattctatttattgcacttg 25335236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 33)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 13255398 - 13255274
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||| ||| ||||||||||||||| || ||||| |||||||       |||||||||||||||||||||||||||  ||||||||||     
T  13255398 ccccccaaaaccctctcccactacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaaattaacctccaaagccctctcctccc 13255300  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  13255299 aatgtcttctatttcttccacttgct 13255274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 33991595 - 33991471
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| || ||||| |||||||       |||||||||||||||||||||||||||  ||||||||||     
T  33991595 ccccccaaaaccctcccccaatacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaaattaacctccaaagccctctcctccc 33991497  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  33991496 aatgtcttctatttcttccacttgct 33991471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 27500038 - 27499914
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  || |||||||||||||||| || ||||| |||||||       |||||||||||||||||||||||||||  ||||||||||     
T  27500038 ccccccaaaaccctcccccgatacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaaattaacctccaaagccctctcctccc 27499940  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  27499939 aatgtcttctatttcttccacttgct 27499914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 1523644 - 1523524
Alignment:
Q  83 caaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgt 182  Q
    ||||||||||| |||||| |||||||||||| || ||||  |||||||       ||||||||||||||||||||||||| |  |||||||||| |||||    
T  1523644 caaaaccctctcccaatataatttttgagttcccccaaacgagggggatttttttattatgagtaaaaaattaacctccatagccctctcctcccaatgt 1523545  T
Q  183 cttctatttcttccacttgct 203  Q
    |||||||||||||||| ||||    
T  1523544 cttctatttcttccacctgct 1523524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 1688244 - 1688367
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| |||||| |||  ||||||||||||||||||| || ||||| |||||||       |||||||||||||||||||||||||||  ||||||||||     
T  1688244 ccccccaaaactctcccccaatacaatttttgagttccc-caaatgagggggatttttt-attatgagtaaaaaattaacctccaaagccctctcctccc 1688341  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  1688342 aatgtcttctatttcttccacttgct 1688367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 200
Target Start/End: Original strand, 47905722 - 47905837
Alignment:
Q  84 aaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtc 183  Q
    |||||||||  ||||||||||||||||||| || ||||| ||||| |       ||||||||||||||| |||||||||||| |||||||||| ||||||    
T  47905722 aaaaccctcccccaatacaatttttgagttcccccaaatgagggg-aattttttattatgagtaaaaaactaacctccaaaaccctctcctcccaatgtc 47905820  T
Q  184 ttctatttcttccactt 200  Q
    |||||||||||||||||    
T  47905821 ttctatttcttccactt 47905837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 32295639 - 32295574
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  32295639 attatgagtaaaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccacttgct 32295574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 39889685 - 39889806
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| || ||||| |||| ||       |||||||||||||||||||||||||||  ||||||||||     
T  39889685 ccccccaaaaccctcccccaatacaatttttgagttcccccaaattagggagatttttt-attatgagtaaaaaattaacctccaaagccctctcctccc 39889783  T
Q  178 aatgtcttctatttcttccactt 200  Q
    |||||||||||||| ||||||||    
T  39889784 aatgtcttctattttttccactt 39889806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 40707240 - 40707349
Alignment:
Q  95 ccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaa-aattaacctccaaaatcctctcctcctaatgtcttctatttct 193  Q
    ||||||||||||||||||| || ||||| || ||||       ||||||||||||| ||||||||||||||  |||||||||| ||||||||||||||||    
T  40707240 ccaatacaatttttgagttcccccaaatgagagggatttttttattatgagtaaaaaaattaacctccaaagccctctcctcccaatgtcttctatttct 40707339  T
Q  194 tccacttgct 203  Q
    ||||||||||    
T  40707340 tccacttgct 40707349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 23871490 - 23871614
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| || ||||| |||| ||       |||||||||||||||||||| ||||||  |||||||||      
T  23871490 ccccccaaaaccctccgccaatacaatttttgagttcccccaaatgagggagatttttt-attatgagtaaaaaattaacttccaaagccctctcctctc 23871588  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  23871589 aatgtcttctatttcttccacttgct 23871614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 26757182 - 26757306
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||| ||||  ||||||||||||||||||| || ||||| |||||||       |||||||||||||||||||||||||||  ||||||||||     
T  26757182 ccccccaaaaacctcccccaatacaatttttgagttaccccaaatgagggggatttttt-attatgagtaaaaaattaacctccaaagccctctcctccc 26757280  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||| |||||||||||||||| |||||    
T  26757281 aatatcttctatttcttccatttgct 26757306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 42488719 - 42488778
Alignment:
Q  144 agtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  42488719 agtaaaaaattaacctccaaaaccctctcctcccaatgtcttctatttcttccacttgct 42488778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 2925978 - 2926085
Alignment:
Q  95 ccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttctt 194  Q
    ||||||||||||||||||| || ||||| |||||||       ||||| |||||||||||||||||||||  |||||||||| |||||||||||||| ||    
T  2925978 ccaatacaatttttgagttcccccaaatgagggggatttttt-attataagtaaaaaattaacctccaaagccctctcctcccaatgtcttctatttttt 2926076  T
Q  195 ccacttgct 203  Q
    |||||||||    
T  2926077 ccacttgct 2926085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 30538835 - 30538897
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccactt 200  Q
    ||||||||||||||||||||||||||||  ||||||||| |||||||||||||||||||||||    
T  30538835 attatgagtaaaaaattaacctccaaaactctctcctcccaatgtcttctatttcttccactt 30538897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 51246591 - 51246714
Alignment:
Q  79 ccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctccta 178  Q
    |||||||||||||| |||||||||||||||||||| || ||||| || | ||       ||||||||||||||||||||||| |||  ||| |||||| |    
T  51246591 ccctcaaaaccctcctccaatacaatttttgagttcccccaaatgagagagatttttt-attatgagtaaaaaattaacctctaaagccctttcctccca 51246689  T
Q  179 atgtcttctatttcttccacttgct 203  Q
    |||||||||||||||| ||||||||    
T  51246690 atgtcttctatttctttcacttgct 51246714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 42162139 - 42162204
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||| |||||||| | |||||| |||||||||||||||||||    
T  42162139 attatgagtaaaaaattaacctccaaaaccctctccttccaatgtcatctatttcttccacttgct 42162204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 43572038 - 43572102
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  43572038 attatgagtaaaaaattaacctccaaagccctctcctcc-aatgtcttctatttcttccacttgct 43572102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 204
Target Start/End: Complemental strand, 15463866 - 15463749
Alignment:
Q  86 aaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtctt 185  Q
    |||||||  |||||||||||||| |||| || ||||| |||||||       ||||| |||||||||||||||||||||  |||||||||| |||| |||    
T  15463866 aaccctcccccaatacaatttttcagttcccccaaatgagggggatttttt-attataagtaaaaaattaacctccaaagccctctcctcccaatgactt 15463768  T
Q  186 ctatttcttccacttgctt 204  Q
    |||||||||||||||||||    
T  15463767 ctatttcttccacttgctt 15463749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 938324 - 938387
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttg 201  Q
    |||||||||||||||||||||||||||| |||||||||  ||| ||||||||||||||||||||    
T  938324 attatgagtaaaaaattaacctccaaaaccctctcctctcaatatcttctatttcttccacttg 938387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 50247590 - 50247527
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttg 201  Q
    |||||||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||    
T  50247590 attatgagtaaaaaattaacctccaaagccctctccttcgaatgtcttctatttcttccacttg 50247527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 7401613 - 7401678
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||| |||||||| |||||||||||||| | ||||||||||||||| ||||    
T  7401613 attatgagtaaaaaattaatctccaaaaccctctcctcctaatattttctatttcttccacctgct 7401678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 201
Target Start/End: Complemental strand, 12293864 - 12293742
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| || ||||| |||||||       |||||||||||||| |||||||||| |  ||||||||||     
T  12293864 ccccccaaaaccctcccccaatacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaatttaacctccatagccctctcctccc 12293766  T
Q  178 aatgtcttctatttcttccacttg 201  Q
    | | ||||||||||||||||||||    
T  12293765 agtttcttctatttcttccacttg 12293742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 14152683 - 14152630
Alignment:
Q  150 aaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  14152683 aaattaacctccaaaaccctctcctcccaatgtcttctatttcttccacttgct 14152630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 38794965 - 38794900
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||  |||||||||| ||| |||||||||| |||||||||||    
T  38794965 attatgagtaaaaaattaacctccaaagccctctcctcccaatatcttctattttttccacttgct 38794900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 17675193 - 17675128
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||| | ||| |||| |||| |||||||||||||||| ||||    
T  17675193 attatgagtaaaaaattaacctccaaaaccttcttctcccaatgccttctatttcttccacatgct 17675128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 203
Target Start/End: Complemental strand, 17688377 - 17688268
Alignment:
Q  95 ccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaa--ttaacctccaaaatcctctcctcctaatgtcttctatttc 192  Q
    ||||||||||||||||||| || ||||| |||| ||       |||||||||||||||  ||||||||||||  |||||||||| ||||| |||||||||    
T  17688377 ccaatacaatttttgagttcccccaaatgagggagatttttt-attatgagtaaaaaaaattaacctccaaagccctctcctcccaatgttttctatttc 17688279  T
Q  193 ttccacttgct 203  Q
    |||||||||||    
T  17688278 ttccacttgct 17688268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 13061491 - 13061551
Alignment:
Q  143 gagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||  |||||| ||| ||||||||| ||||||||||||||||    
T  13061491 gagtaaaaaattaacctccaaagccctctcttccgaatgtcttcaatttcttccacttgct 13061551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 26940601 - 26940536
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||| || ||   ||||||| | ||||||||||||||||||||||||||    
T  26940601 attatgagtaaaaaattaacccccgaagctctctccttccaatgtcttctatttcttccacttgct 26940536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 8156365 - 8156490
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaa-tcctctcctcc 176  Q
    |||| |||||| |||  |||||||||||||| |||| || ||||| |||||||       ||||| ||||||||||||||||||||||  |||||||| |    
T  8156365 ccccccaaaactctcccccaatacaatttttaagttcccccaaatgagggggatttttt-attataagtaaaaaattaacctccaaaagccctctccttc 8156463  T
Q  177 taatgtcttctatttcttccacttgct 203  Q
     ||||| ||||||||||| ||||||||    
T  8156464 caatgttttctatttctttcacttgct 8156490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 896583 - 896646
Alignment:
Q  140 tatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||  | |||||||| ||| |||| ||||  |||||||||||    
T  896583 tatgagtaaaaaattaacctccaaagccttctcctcccaatatcttttattctttccacttgct 896646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 130
Target Start/End: Complemental strand, 50476586 - 50476540
Alignment:
Q  84 aaaaccctcttccaatacaatttttgagtttccacaaataaggggga 130  Q
    ||||||||| |||||||||||||||||||| || ||||| |||||||    
T  50476586 aaaaccctcctccaatacaatttttgagttccctcaaatgaggggga 50476540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 11017594 - 11017529
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||||||||||| |||||||||||||  ||| | |||  |||||| | |||||||||||||||||    
T  11017594 attatgagtaaaatattaacctccaaagcccttttctctcaatgtcatatatttcttccacttgct 11017529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 203
Target Start/End: Original strand, 28773473 - 28773530
Alignment:
Q  146 taaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||| ||||||||||| || |||||||||| ||||||||| |||| |||||| ||||    
T  28773473 taaaagattaacctccataaccctctcctcccaatgtcttcaattttttccacatgct 28773530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 41695030 - 41694907
Alignment:
Q  79 ccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctccta 178  Q
    ||||||||||||||  ||||||||||||||||||| || ||||| |||||||       ||||||||||||||||||||||||||||  ||||||| | |    
T  41695030 ccctcaaaaccctcccccaatacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaaattaacctccaaaactctctccttcca 41694932  T
Q  179 atgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||    
T  41694931 atgtcttctatttcttccacttgct 41694907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 35701114 - 35700990
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| || ||||| |||||||       |||||||||||||||||||||||||||  ||||||||||     
T  35701114 ccccccaaaaccctcccccaatacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaaattaacctccaaagccctctcctccc 35701016  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||| ||||||||    
T  35701015 aatgtcttctatttctttcacttgct 35700990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 78 - 201
Target Start/End: Complemental strand, 26149657 - 26149535
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||||||||||||||| ||||||||||||||||||| || ||||| | ||| |       |||| ||||||||||||||||||||||  ||||||||||     
T  26149657 cccctcaaaaccctctcccaatacaatttttgagttcccccaaatgatggg-acttttttattacgagtaaaaaattaacctccaaagccctctcctccc 26149559  T
Q  178 aatgtcttctatttcttccacttg 201  Q
    ||||||||||||||||||||||||    
T  26149558 aatgtcttctatttcttccacttg 26149535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 38928729 - 38928853
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||   |||||||||||||||||| || ||||| |||||||       ||||||||||||||||||||||||||| ||||||| | |     
T  38928729 ccccccaaaaccctcccgcaatacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaaattaacctccaaagtcctctcattcc 38928827  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  38928828 aatgtcttctatttcttccacttgct 38928853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 1658172 - 1658107
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  1658172 attatgactaaaaaattaacctccaaagtcctctcctcccaatgtcttctatttcttccacttgct 1658107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 203
Target Start/End: Original strand, 38302400 - 38302504
Alignment:
Q  99 tacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccac 198  Q
    ||||||||||||||| || ||||| |||||||       ||||||||||||| |||||||||||||  |||||||||  |||||||||||||||||||||    
T  38302400 tacaatttttgagttcccccaaatgagggggaattttttattatgagtaaaatattaacctccaaagccctctcctctcaatgtcttctatttcttccac 38302499  T
Q  199 ttgct 203  Q
    |||||    
T  38302500 ttgct 38302504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 10295478 - 10295413
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||  | |||||||| ||||||||||||||||||||||||||    
T  10295478 attatgagtaaaaaattaacctccaaagccatctcctcccaatgtcttctatttcttccacttgct 10295413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 27480262 - 27480323
Alignment:
Q  144 agtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgcttc 205  Q
    |||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||||    
T  27480262 agtaaaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccacttgcttc 27480323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 41638350 - 41638285
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||| |||||||  ||||||||||||||||||||||||| ||||||||||    
T  41638350 attatgagtaaaaaattaacttccaaaactctctcctcctaatgtcttctatttcatccacttgct 41638285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 2021034 - 2020911
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||||||||||||||  ||||||||||||||||||| |  |||| | ||||||       |||||||||||||||||||||||||||   |||||||||     
T  2021034 cccctcaaaaccctcccccaatacaatttttgagttcctccaaaga-gggggatttttt-attatgagtaaaaaattaacctccaaagctctctcctccc 2020937  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||| ||||||||||||||||||    
T  2020936 aatgtctactatttcttccacttgct 2020911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 4649031 - 4649138
Alignment:
Q  95 ccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttctt 194  Q
    |||||||| |||||||||| || ||||| |||||||       |||||||||||||||||||||| ||||  |||||||||  |||||||||||||||||    
T  4649031 ccaatacagtttttgagttccctcaaatgagggggatttttt-attatgagtaaaaaattaaccttcaaagccctctcctctcaatgtcttctatttctt 4649129  T
Q  195 ccacttgct 203  Q
    |||||||||    
T  4649130 ccacttgct 4649138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 35868822 - 35868766
Alignment:
Q  144 agtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccactt 200  Q
    ||||||| |||||||||||||| |||||||||| |||||||||||||||||||||||    
T  35868822 agtaaaagattaacctccaaaaccctctcctcccaatgtcttctatttcttccactt 35868766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 203
Target Start/End: Complemental strand, 32760794 - 32760687
Alignment:
Q  95 ccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttctt 194  Q
    ||||||||||||||||||| || ||||| |||| ||       ||||| || ||||||||||||||||||  ||||||||||||||||||| ||||||||    
T  32760794 ccaatacaatttttgagttcccccaaatgagggagatttttt-attataagcaaaaaattaacctccaaagccctctcctcctaatgtcttatatttctt 32760696  T
Q  195 ccacttgct 203  Q
    |||| ||||    
T  32760695 ccacctgct 32760687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 17092951 - 17092828
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  |||||||||||||||||||||| ||||| |||   |       | ||||||||||||||||| |||||||  |||||||| |     
T  17092951 ccccccaaaaccctcccccaatacaatttttgagtttccccaaatgagga--aattttttactatgagtaaaaaattaatctccaaagccctctccttcc 17092854  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    |||||||||||| |||||||||||||    
T  17092853 aatgtcttctatatcttccacttgct 17092828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 25026917 - 25026868
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttct 187  Q
    |||||||||||||||||||||||||||  |||||||||| ||||||||||    
T  25026917 attatgagtaaaaaattaacctccaaagacctctcctcccaatgtcttct 25026868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 203
Target Start/End: Original strand, 37508424 - 37508543
Alignment:
Q  84 aaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtc 183  Q
    |||||||||  ||||||||||||||||||| |  ||||| ||||| |       ||||||| |||||||||||||||||||  |||||||| | ||||||    
T  37508424 aaaaccctcccccaatacaatttttgagttcctccaaatgagggg-aattttttattatgaataaaaaattaacctccaaagccctctccttccaatgtc 37508522  T
Q  184 -ttctatttcttccacttgct 203  Q
     || |||||||||||||||||    
T  37508523 tttttatttcttccacttgct 37508543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 200
Target Start/End: Original strand, 38120219 - 38120323
Alignment:
Q  95 ccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttctt 194  Q
    ||||||||||||||||||| || ||||| |||| ||       |||| |||||||||||||||||||||| || |  ||||  |||||||||||||| ||    
T  38120219 ccaatacaatttttgagttcccccaaatgagggagatttttg-attaagagtaaaaaattaacctccaaagtctttccctctcaatgtcttctatttgtt 38120317  T
Q  195 ccactt 200  Q
    ||||||    
T  38120318 ccactt 38120323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 15739525 - 15739460
Alignment:
Q  138 attatgagtaaaaaattaacctc-caaaatcctctcctcctaatgtcttctatttcttccacttgc 202  Q
    ||||||| ||||||||||||||| ||||| ||||| || | |||||||||||||| | ||||||||    
T  15739525 attatgaataaaaaattaacctctcaaaaccctcttcttccaatgtcttctatttttcccacttgc 15739460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 162 - 203
Target Start/End: Complemental strand, 41923149 - 41923108
Alignment:
Q  162 aaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||| ||| |||||||||| ||||||||||||||||||||    
T  41923149 aaaatcttcttctcctaatgttttctatttcttccacttgct 41923108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 25598872 - 25598928
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttctt 194  Q
    ||||||| ||||||||||||| ||| |  |||||||||| |||||||| ||||||||    
T  25598872 attatgaataaaaaattaacccccacagccctctcctcccaatgtcttatatttctt 25598928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 3043150 - 3043269
Alignment:
Q  83 caaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgt 182  Q
    ||||||||||  ||||||||||||||||||| || ||||| |||||||       |||||||||||||||||||||||||||  |||||||||| |||||    
T  3043150 caaaaccctcccccaatacaatttttgagttcccccaaatcagggggatttttt-attatgagtaaaaaattaacctccaaaggcctctcctcccaatgt 3043248  T
Q  183 cttctatttcttccacttgct 203  Q
    |||||||||||||||||||||    
T  3043249 cttctatttcttccacttgct 3043269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 24242124 - 24242243
Alignment:
Q  83 caaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgt 182  Q
    ||||||||||  ||||||||||||||||||| || ||||| |||||||       ||||||||||||||||||||||||||| ||||||||||| ||| |    
T  24242124 caaaaccctcccccaatacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaaattaacctccaaagtcctctcctcccaatat 24242222  T
Q  183 cttctatttcttccacttgct 203  Q
    |||||||||||||||||||||    
T  24242223 cttctatttcttccacttgct 24242243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 49683045 - 49683152
Alignment:
Q  95 ccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttctt 194  Q
    ||||||||||||||||||| || ||||| |||||||       |||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||    
T  49683045 ccaatacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaaattaacctccaaagccctctcctcctaatgtcttctatttttt 49683143  T
Q  195 ccacttgct 203  Q
    |||||||||    
T  49683144 ccacttgct 49683152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 33982805 - 33982870
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||    
T  33982805 attatgagtaaaaaattaacctccaaagtcctctcctcccaatgtcttctatttcttccacttgct 33982870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 30131913 - 30132037
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  |||||||||||||||||||||| || || ||||  |       |||||||||||||||||||||||||||  ||||||||||     
T  30131913 ccccccaaaaccctcccccaatacaatttttgagtttccccagatgaggga-aattttttattatgagtaaaaaattaacctccaaagccctctcctccc 30132011  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  30132012 aatgtcttctatttcttccacttgct 30132037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 36796477 - 36796353
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||| ||||  ||||||||||||||||||| || ||||| |||||||       |||||||||||||||||||||| || | |||||||||||     
T  36796477 ccccccaaaagcctcccccaatacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaaattaaccttcatagtcctctcctccc 36796379  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  36796378 aatgtcttctatttcttccacttgct 36796353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 44412182 - 44412305
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||   |||||||||||||||||| ||| |||| |||||||       |||||||||||||||||||||||||||| |||||||| |     
T  44412182 ccccccaaaaccctccctcaatacaatttttgagttccca-aaatgagggggatttttt-attatgagtaaaaaattaacctccaaaaccctctccttcc 44412279  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  44412280 aatgtcttctatttcttccacttgct 44412305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 23163519 - 23163454
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||    
T  23163519 attatgagtaaaaaattaacctccaaagccctctcctcctgatgtcttctatttcttccacttgct 23163454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 205
Target Start/End: Complemental strand, 38526207 - 38526081
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||| ||||||||||||||||||| || ||||| |||| ||       |||||||| ||||||||||||||||||  |||||||| |     
T  38526207 ccccccaaaaccctctcccaatacaatttttgagttcccccaaatgagggagattttat-attatgagaaaaaaattaacctccaaagccctctccttcc 38526109  T
Q  178 aatgtcttctatttcttccacttgcttc 205  Q
    ||||||||||||||||||||||| ||||    
T  38526108 aatgtcttctatttcttccacttacttc 38526081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 41962004 - 41962126
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattat-gagtaaaaaattaacctccaaaatcctctcctcc 176  Q
    |||| ||||||||||  ||||||||||||||||||| || ||||| |||||||        |||| ||||||||||||||||||||||  ||||||||||    
T  41962004 ccccccaaaaccctcccccaatacaatttttgagttcccccaaatgagggggatttt----ttattgagtaaaaaattaacctccaaagccctctcctcc 41962099  T
Q  177 taatgtcttctatttcttccacttgct 203  Q
     ||||||||||||||||||||||||||    
T  41962100 caatgtcttctatttcttccacttgct 41962126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 55439579 - 55439514
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||    
T  55439579 attatgagtaaaaaattaacctccaaagtcctctcctcccaatgtcctctatttcttccacttgct 55439514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 17642638 - 17642518
Alignment:
Q  83 caaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgt 182  Q
    |||||||||| ||| |||||||||||||||| || ||||| |||| ||       |||||||||||||||||||||||||||| |||||  ||| |||||    
T  17642638 caaaaccctcatccgatacaatttttgagttccc-caaatgagggagatttttt-attatgagtaaaaaattaacctccaaaaccctcttttcccaatgt 17642541  T
Q  183 cttctatttcttccacttgcttc 205  Q
    |||||||||||||||||||||||    
T  17642540 cttctatttcttccacttgcttc 17642518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 49860890 - 49860766
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| |||||||| |  |||||||||||||| |||| || ||||| |||||||       |||||||||||||||||||||||||||  ||||||||||     
T  49860890 ccccccaaaacccccgcccaatacaattttttagttcccccaaatgagggggatttgtt-attatgagtaaaaaattaacctccaaagccctctcctccc 49860792  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||| |||||    
T  49860791 aatgtcttctatttcttccaattgct 49860766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 34306139 - 34306077
Alignment:
Q  141 atgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  34306139 atgagtaaaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccacttgct 34306077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 46312507 - 46312569
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccactt 200  Q
    |||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||    
T  46312507 attatgagtaaaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccactt 46312569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 83 - 203
Target Start/End: Original strand, 47714705 - 47714823
Alignment:
Q  83 caaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgt 182  Q
    ||||||||||  ||||||||||||||||||| || ||||| |||| ||       |||||||||||||||||||||||||||  |||||||| | |||||    
T  47714705 caaaaccctcccccaatacaatttttgagttccc-caaatgagggagatttttt-attatgagtaaaaaattaacctccaaagccctctccttccaatgt 47714802  T
Q  183 cttctatttcttccacttgct 203  Q
    |||||||||||||||||||||    
T  47714803 cttctatttcttccacttgct 47714823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 43237286 - 43237221
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||| ||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  43237286 attatgcgtaaaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccacttgct 43237221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 45555687 - 45555563
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||   |||||||||||||||||| || ||||| |||||||       |||||||||||||||||||||||||||  ||| || |||     
T  45555687 ccccccaaaaccctcccacaatacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaaattaacctccaaagccctgtcttccc 45555589  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
     |||||||||||||||||||||||||    
T  45555588 gatgtcttctatttcttccacttgct 45555563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 43007582 - 43007647
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||| |||||||||||||||||||||  |||||||||| ||| ||||||||||||||||||||||    
T  43007582 attataagtaaaaaattaacctccaaagccctctcctcccaatatcttctatttcttccacttgct 43007647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 47789473 - 47789597
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| || || || ||||| |       ||||||||||||| |||||||||||||   ||||||||      
T  47789473 ccccccaaaaccctcccccaatacaatttttgagttcccccagatgagggg-atttttttattatgagtaaaagattaacctccaaagctctctcctctc 47789571  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  47789572 aatgtcttctatttcttccacttgct 47789597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 31178332 - 31178391
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttcca 197  Q
    |||||||| ||||||||||||||||||  |||||||| | ||||||||||||||||||||    
T  31178332 attatgagcaaaaaattaacctccaaagccctctccttccaatgtcttctatttcttcca 31178391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 203
Target Start/End: Complemental strand, 39499235 - 39499125
Alignment:
Q  95 ccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctat---tt 191  Q
    ||||||||||||||||||||||  |||| |||| ||       |||||||||||||||||||||||||||  |||||||||| ||| ||||||||   ||    
T  39499235 ccaatacaatttttgagtttccctaaatgagggagatttttt-attatgagtaaaaaattaacctccaaagccctctcctcccaatatcttctatatctt 39499137  T
Q  192 cttccacttgct 203  Q
    ||||||||||||    
T  39499136 cttccacttgct 39499125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 145 - 203
Target Start/End: Original strand, 42583364 - 42583422
Alignment:
Q  145 gtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||| |||||| |   ||||||||||||||||||||||||||    
T  42583364 gtaaaaaattaacctccaaaaccctctcatttcaatgtcttctatttcttccacttgct 42583422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 38515245 - 38515181
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||| |||||  |||||||||| ||| ||||||||||||| ||||||||    
T  38515245 attatgagtaaaaaattaacc-ccaaagccctctcctcccaatatcttctatttctttcacttgct 38515181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 200
Target Start/End: Complemental strand, 46017269 - 46017161
Alignment:
Q  89 cctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttcta 188  Q
    |||| ||||||||||||||||||||  | ||||||||| |||       |||||||||||||  |||||||||||| || |||||||| ||||||||| |    
T  46017269 cctcctccaatacaatttttgagttctcccaaataaggaggatttttt-attatgagtaaaa--ttaacctccaaagtcttctcctcccaatgtcttcca 46017173  T
Q  189 tttcttccactt 200  Q
    |||||| |||||    
T  46017172 tttctttcactt 46017161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 27922016 - 27921977
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttcca 117  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  27922016 ccccccaaaaccctcttccaatacaacttttgagtttcca 27921977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 148 - 203
Target Start/End: Complemental strand, 29623223 - 29623168
Alignment:
Q  148 aaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||  ||||  |||| |||||||||||| |||||||||||||||||||    
T  29623223 aaaaattaaccatcaaagccctcccctcctaatgtcctctatttcttccacttgct 29623168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 113
Target Start/End: Original strand, 33281733 - 33281768
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtt 113  Q
    |||||||||| |||||||||||||||||||||||||    
T  33281733 cccctcaaaatcctcttccaatacaatttttgagtt 33281768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 47434404 - 47434463
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttcca 197  Q
    ||||||| ||||||| ||||||||||| || ||||||   ||||||||||||||||||||    
T  47434404 attatgaataaaaaactaacctccaaagtcttctcctttcaatgtcttctatttcttcca 47434463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 113
Target Start/End: Original strand, 52620852 - 52620887
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtt 113  Q
    ||||||||||||||| ||||||||||||||||||||    
T  52620852 cccctcaaaaccctcctccaatacaatttttgagtt 52620887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Complemental strand, 2420666 - 2420632
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctc 172  Q
    |||||||||||||||||||||||||||| ||||||    
T  2420666 attatgagtaaaaaattaacctccaaaaccctctc 2420632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 18018624 - 18018749
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||||||||||||||  ||||||||||||||||||| || ||||| |||| ||       |||||||||||||||||||||||||||| ||||||||||     
T  18018624 cccctcaaaaccctcc-ccaatacaatttttgagttcccccaaatgagggagatttttt-attatgagtaaaaaattaacctccaaaaccctctcctccc 18018721  T
Q  178 aatgtcttctatttcttccacttgcttc 205  Q
    ||||||||||||||||| ||||||||||    
T  18018722 aatgtcttctatttctttcacttgcttc 18018749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 30312432 - 30312556
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| |||||||||| | ||||||||||||| |||| || ||||| |||||||       |||||||||||||||||||||||||||| ||||||||||     
T  30312432 ccccccaaaaccctccttcaatacaattttttagttcccccaaatgagggggatttttt-attatgagtaaaaaattaacctccaaaaccctctcctccc 30312530  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||| ||||||||||||||||||||    
T  30312531 aatgtgttctatttcttccacttgct 30312556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 199
Target Start/End: Complemental strand, 4042018 - 4041898
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| |  ||||| |||||||       |||||||||||||||||||||||||||| ||||||||||     
T  4042018 ccccccaaaaccctcccccaatacaatttttgagttccttcaaatgagggggatttttt-attatgagtaaaaaattaacctccaaaaccctctcctccc 4041920  T
Q  178 aatgtcttctatttcttccact 199  Q
    ||| ||||||||||||||||||    
T  4041919 aatatcttctatttcttccact 4041898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 8555803 - 8555927
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  |||||||||||||| |||| || ||||| |||||||       |||| ||||||||||||||||||||||| ||||| ||||     
T  8555803 ccccccaaaaccctcccccaatacaattttttagttcccccaaatgagggggatttttt-attacgagtaaaaaattaacctccaaaaccctcttctccc 8555901  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  8555902 aatgtcttctatttcttccacttgct 8555927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 1725959 - 1725840
Alignment:
Q  83 caaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgt 182  Q
    ||||||||||  ||||||||||||||||||| || || || |||||||       |||||||||||||||||||||||||||| || ||||||| |||||    
T  1725959 caaaaccctcccccaatacaatttttgagttcccccagatgagggggatttttt-attatgagtaaaaaattaacctccaaaaccccctcctcccaatgt 1725861  T
Q  183 cttctatttcttccacttgct 203  Q
     ||||||||||||||||||||    
T  1725860 tttctatttcttccacttgct 1725840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 36567322 - 36567429
Alignment:
Q  95 ccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttctt 194  Q
    ||||||||||||||||||| || ||||| |||| ||       |||||||||||||||||||||||||||| |||||||| | |||||||||||||||||    
T  36567322 ccaatacaatttttgagttcccccaaatgagggagatttttt-attatgagtaaaaaattaacctccaaaaccctctccttccaatgtcttctatttctt 36567420  T
Q  195 ccacttgct 203  Q
    |||||||||    
T  36567421 ccacttgct 36567429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 18826318 - 18826383
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||||||    
T  18826318 attatgagtaaaaaattaacctccaaagccctctcttcctaatgtcttctatttcttccacttgct 18826383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 205
Target Start/End: Complemental strand, 10165464 - 10165343
Alignment:
Q  83 caaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgt 182  Q
    ||||||||||  |||||||||||||| |||| || ||||| ||||| |       |||||||||||||||||||||| ||||| |||||||||| |||||    
T  10165464 caaaaccctcccccaatacaattttttagttcccccaaatgaggggtattcttt-attatgagtaaaaaattaaccttcaaaaccctctcctcccaatgt 10165366  T
Q  183 cttctatttcttccacttgcttc 205  Q
    ||||||||| |||||||||||||    
T  10165365 cttctattttttccacttgcttc 10165343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 203
Target Start/End: Original strand, 25960638 - 25960761
Alignment:
Q  79 ccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctccta 178  Q
    ||||||||||||||  || |||||||||||||||| || ||||| |||| ||       |||||||||||||||||||||||||||  ||||||||   |    
T  25960638 ccctcaaaaccctcccccgatacaatttttgagttcccccaaatgagggagattttct-attatgagtaaaaaattaacctccaaagccctctcctttca 25960736  T
Q  179 atgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||    
T  25960737 atgtcttctatttcttccacttgct 25960761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 12964058 - 12964123
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||    
T  12964058 attatgagtaaaaaattaacctccaaagctctctcctcccaatgtcttctatttcttccacttgct 12964123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 44137147 - 44137082
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||| |||||    
T  44137147 attatgagtaaaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccatttgct 44137082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 78 - 176
Target Start/End: Complemental strand, 40357511 - 40357414
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcc 176  Q
    |||| ||||||||||| ||||||||||||||||||| || ||||| |||||||       |||||||||||||||||||||||||||| ||||||||||    
T  40357511 ccccccaaaaccctctcccaatacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaaattaacctccaaaaccctctcctcc 40357414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 3119936 - 3120001
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||| | |||||||  ||||||||||||||||||| ||||||    
T  3119936 attatgagtaaaaaattaacctccaaaaccatctcctcgcaatgtcttctatttcttccccttgct 3120001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 38023531 - 38023596
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||| ||||||||   |||||||||||||||||| |||||||    
T  38023531 attatgagtaaaaaattaacctccaaaaccctctcctttcaatgtcttctatttcttctacttgct 38023596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 44020349 - 44020284
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||  ||| |||||||| | ||||||||||||||||||||||||||    
T  44020349 attatgagtaaaaaattaacctctcaaaccctctccttccaatgtcttctatttcttccacttgct 44020284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 8410957 - 8411081
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| |||||||| |  ||||||||||||||||||| || ||||| ||||| |       ||||| |||||||||||||||||||||  ||||||||||     
T  8410957 ccccccaaaacccacccccaatacaatttttgagttcccccaaatgagggg-aattttttattataagtaaaaaattaacctccaaagccctctcctccc 8411055  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||| || |||||||    
T  8411056 aatgtcttctatttcctcaacttgct 8411081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 8991049 - 8991116
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgcttc 205  Q
    |||||||||||||||||||||||||||  | |||||| | ||||||||||||||||||||||| ||||    
T  8991049 attatgagtaaaaaattaacctccaaagccatctccttccaatgtcttctatttcttccacttccttc 8991116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 18562004 - 18561937
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgcttc 205  Q
    |||||||||||||||||||||| |||| || |||||||| ||||||||| |||||||| |||||||||    
T  18562004 attatgagtaaaaaattaaccttcaaagtcatctcctcccaatgtcttcaatttcttctacttgcttc 18561937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 18780438 - 18780312
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||| ||||||||||||||||||| || ||||| | |||||        ||| ||||||||||||||||||||||  ||||||||||     
T  18780438 ccccccaaaaccctctcccaatacaatttttgagttcccccaaatgaaggggatttcttt-ttaggagtaaaaaattaacctccaaagccctctcctccc 18780340  T
Q  178 a--atgtcttctatttcttccacttgct 203  Q
    |  |||||||||||||||||||| ||||    
T  18780339 aatatgtcttctatttcttccacgtgct 18780312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 19382931 - 19382808
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||| ||||||||||| || ||||| |||||||       |||||||||||||||||||||| ||||  ||| |||||      
T  19382931 ccccccaaaaccctcccccaatacgatttttgagttccc-caaatgagggggatttttt-attatgagtaaaaaattaacctacaaagccctttcctctc 19382834  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  19382833 aatgtcttctatttcttccacttgct 19382808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 196
Target Start/End: Complemental strand, 32243524 - 32243412
Alignment:
Q  83 caaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgt 182  Q
    ||||||||||  ||||||||||||||||||| || ||||| |||  ||       ||||||| |||||||||||||||||||  |||||||||| |||||    
T  32243524 caaaaccctcccccaatacaatttttgagttcccccaaatgaggatgatttttt-attatgattaaaaaattaacctccaaagccctctcctcccaatgt 32243426  T
Q  183 cttctatttcttcc 196  Q
    ||||||||||||||    
T  32243425 cttctatttcttcc 32243412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 3038990 - 3039099
Alignment:
Q  95 ccaatacaatttttgagtttccacaaataagggggannnnnnnattatga--gtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttc 192  Q
    ||||||||||||||||||| || ||||| |||||||       |||||||  ||||||||||||||| ||||  |||||||||| ||||||||||||||     
T  3038990 ccaatacaatttttgagttcccccaaatgagggggatttttt-attatgatcgtaaaaaattaaccttcaaagccctctcctcccaatgtcttctatttt 3039088  T
Q  193 ttccacttgct 203  Q
    |||||||||||    
T  3039089 ttccacttgct 3039099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 78 - 199
Target Start/End: Original strand, 13765966 - 13766085
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| || ||||| ||||| |       ||||||||||||||||||||||| |||  ||||| || |     
T  13765966 ccccccaaaaccctcccccaatacaatttttgagttccc-caaatgagggg-aattttttattatgagtaaaaaattaacctctaaagccctcttctacc 13766063  T
Q  178 aatgtcttctatttcttccact 199  Q
    ||||||||||||||||||||||    
T  13766064 aatgtcttctatttcttccact 13766085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 197
Target Start/End: Original strand, 6711918 - 6711977
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttcca 197  Q
    |||||||||||||||||||| ||||||  |||||||||  ||||||||||||||||||||    
T  6711918 attatgagtaaaaaattaacttccaaagccctctcctctcaatgtcttctatttcttcca 6711977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 200
Target Start/End: Original strand, 14008417 - 14008475
Alignment:
Q  142 tgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccactt 200  Q
    |||||||||||||||||||||||  | |||| ||| |||||||||||||||||||||||    
T  14008417 tgagtaaaaaattaacctccaaagccatctcatcccaatgtcttctatttcttccactt 14008475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 38293884 - 38293814
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctct-----cctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||| | |||||     ||||| ||||||||||||||||||||||||||    
T  38293884 attatgagtaaaaaattaacctccaagaccctcttctcccctcccaatgtcttctatttcttccacttgct 38293814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 31550335 - 31550400
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||| |||  ||||| |||| |  |||||||||||||||||||||||    
T  31550335 attatgagtaaaaaattaacctcaaaagccctcttctccaatcgtcttctatttcttccacttgct 31550400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 176
Target Start/End: Original strand, 31899387 - 31899467
Alignment:
Q  95 ccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcc 176  Q
    ||||||||||||||||||| || ||||| ||||| |       |||||||||||||||||||||||||||  ||||||||||    
T  31899387 ccaatacaatttttgagttcccccaaattagggg-aattttttattatgagtaaaaaattaacctccaaagccctctcctcc 31899467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 725941 - 725888
Alignment:
Q  147 aaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccactt 200  Q
    |||||||||||||| |||  |||||||| | ||| |||||||||||||||||||    
T  725941 aaaaaattaacctctaaagccctctccttccaatttcttctatttcttccactt 725888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 115
Target Start/End: Original strand, 43139883 - 43139911
Alignment:
Q  87 accctcttccaatacaatttttgagtttc 115  Q
    |||||||||||||||||||||||||||||    
T  43139883 accctcttccaatacaatttttgagtttc 43139911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 26574422 - 26574546
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| || ||||| |||||||       |||||||||||||||||||||| |||| || |||||| |     
T  26574422 ccccccaaaaccctcccccaatacaatttttgagttcccccaaatgagggggatttttt-attatgagtaaaaaattaaccttcaaagtcatctccttcc 26574520  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||||||||||||    
T  26574521 aatgtcttctatttcttccacttgct 26574546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 24734877 - 24734812
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  24734877 attatgagtaaaaaattaacctccaaagccctctcctcccaatgtcttctatttcttccacttgct 24734812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 84 - 203
Target Start/End: Original strand, 29241866 - 29241984
Alignment:
Q  84 aaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtc 183  Q
    |||||||||  ||||||||||||||||||| || ||||| |||||||       |||||||||||||||||| ||||||||  |||||||||| ||||||    
T  29241866 aaaaccctcccccaatacaatttttgagttaccccaaatgagggggatttttt-attatgagtaaaaaattatcctccaaagccctctcctcccaatgtc 29241964  T
Q  184 ttctatttcttccacttgct 203  Q
    |||||||||||||| |||||    
T  29241965 ttctatttcttccatttgct 29241984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 1029288 - 1029223
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||| ||||||||  |||||||| | ||||||||||||||||||||||||||    
T  1029288 attatgagtaaaaaattatcctccaaagccctctccttccaatgtcttctatttcttccacttgct 1029223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 14275981 - 14275916
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||| || |  |||||||||| ||||||||||||||||||||||||||    
T  14275981 attatgagtaaaaaattaaccttcatagccctctcctcccaatgtcttctatttcttccacttgct 14275916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 4910001 - 4910066
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||||||||||||||||||||||||   ||| ||||| |||||||||| |||||||||||||||    
T  4910001 attatgagtaaaaaattaacctccaaagctctcccctcccaatgtcttctgtttcttccacttgct 4910066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 205
Target Start/End: Complemental strand, 34914622 - 34914555
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccacttgcttc 205  Q
    |||||||||||||||||||||||||||  |||||||| | |||| || ||||||||||||||| ||||    
T  34914622 attatgagtaaaaaattaacctccaaagccctctccttccaatgcctactatttcttccacttacttc 34914555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 203
Target Start/End: Complemental strand, 5825381 - 5825263
Alignment:
Q  83 caaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgt 182  Q
    ||||||||||  ||||||||| ||||||||| || ||||| |||||||       ||||| |||||||||||||||| ||||  | |||||||| |||||    
T  5825381 caaaaccctcccccaatacaaattttgagttccc-caaatgagggggatttttt-attatcagtaaaaaattaaccttcaaagccttctcctcccaatgt 5825284  T
Q  183 cttctatttcttccacttgct 203  Q
    |||||||||||| ||||||||    
T  5825283 cttctatttctttcacttgct 5825263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 199
Target Start/End: Original strand, 31345456 - 31345517
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccact 199  Q
    |||||||||||||||||||| || ||| ||||||||||| || ||||||||||| |||||||    
T  31345456 attatgagtaaaaaattaacatctaaagtcctctcctcccaacgtcttctattttttccact 31345517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 26481175 - 26481278
Alignment:
Q  95 ccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttctt 194  Q
    ||||||||||||||||| | ||  |||| |||||||       |||||||||||||||||||||||||||  ||| |||    |||||||||||||||||    
T  26481175 ccaatacaatttttgagctcccctaaatgagggggatttttttattatgagtaaaaaattaacctccaaagccct-tcc----aatgtcttctatttctt 26481269  T
Q  195 ccacttgct 203  Q
    |||||||||    
T  26481270 ccacttgct 26481278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 176
Target Start/End: Original strand, 23095155 - 23095252
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcc 176  Q
    |||| ||||||||||  || ||||||||||| |||| || ||||| |||||||       |||||||||||||||||||||||||||  ||||||||||    
T  23095155 ccccccaaaaccctccccccatacaattttttagttcccccaaatgagggggatttttt-attatgagtaaaaaattaacctccaaagccctctcctcc 23095252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 203
Target Start/End: Complemental strand, 15615640 - 15615597
Alignment:
Q  160 ccaaaatcctctcctcctaatgtcttctatttcttccacttgct 203  Q
    |||||| |||||||||| ||||||||||||||||| ||||||||    
T  15615640 ccaaaaccctctcctcccaatgtcttctatttctttcacttgct 15615597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 113
Target Start/End: Complemental strand, 13380590 - 13380560
Alignment:
Q  83 caaaaccctcttccaatacaatttttgagtt 113  Q
    |||||||||||||||||||||||||||||||    
T  13380590 caaaaccctcttccaatacaatttttgagtt 13380560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 95 - 203
Target Start/End: Original strand, 3715 - 3823
Alignment:
Q  95 ccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttctt 194  Q
    ||||||||||||||||||| || |||||| ||||||       |||||||||||||||||| ||||||||  | | |||||| |||||||||||||||||    
T  3715 ccaatacaatttttgagttcccccaaatatgggggatttttttattatgagtaaaaaattatcctccaaagccttatcctccaaatgtcttctatttctt 3814  T
Q  195 ccacttgct 203  Q
    |||||||||    
T  3815 ccacttgct 3823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1562 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1562
Description:

Target: scaffold1562; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 203
Target Start/End: Complemental strand, 194 - 68
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaa-taagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcc 176  Q
    |||||||||||||||  ||||||||||||||||||| || |||| | |||||         |||||||||||||||||||||||||||  | ||| ||||    
T  194 cccctcaaaaccctcccccaatacaatttttgagttcccccaaaatgaggggtttttttttattatgagtaaaaaattaacctccaaagccttcttctcc 95  T
Q  177 taatgtcttctatttcttccacttgct 203  Q
     ||||| ||||||||||||||||||||    
T  94 caatgttttctatttcttccacttgct 68  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1158 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold1158
Description:

Target: scaffold1158; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 2399 - 2525
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaa-taagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcc 176  Q
    |||||||||||||||  ||||||||||||||||||| || |||| | |||||         |||||||||||||||||||||||||||  | ||| ||||    
T  2399 cccctcaaaaccctcccccaatacaatttttgagttcccccaaaatgaggggtttttttttattatgagtaaaaaattaacctccaaagccttcttctcc 2498  T
Q  177 taatgtcttctatttcttccacttgct 203  Q
     ||||| ||||||||||||||||||||    
T  2499 caatgttttctatttcttccacttgct 2525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 78 - 203
Target Start/End: Original strand, 35482 - 35605
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataagggggannnnnnnattatgagtaaaaaattaacctccaaaatcctctcctcct 177  Q
    |||| ||||||||||  ||||||||||||||||||| || ||||| ||||| |       |||||||||||||||||||||||||||   ||||| |||     
T  35482 ccccccaaaaccctcccccaatacaatttttgagttccc-caaatgagggg-aattttttattatgagtaaaaaattaacctccaaagctctctcttccc 35579  T
Q  178 aatgtcttctatttcttccacttgct 203  Q
    ||||||||||||||||| ||||||||    
T  35580 aatgtcttctatttctttcacttgct 35605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 67892 - 67830
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccactt 200  Q
    ||||||||||||||||||||||||||||||||||| ||  ||| |||||||||||||| ||||    
T  67892 attatgagtaaaaaattaacctccaaaatcctctcttcacaatatcttctatttcttcaactt 67830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 75997 - 75935
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccactt 200  Q
    ||||||||||||||||||||||||||||| ||||| ||  ||| |||||||||||||| ||||    
T  75997 attatgagtaaaaaattaacctccaaaattctctcttctcaatatcttctatttcttcaactt 75935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 138 - 200
Target Start/End: Original strand, 107765 - 107827
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccactt 200  Q
    ||||||||||||||||||||||||||||| ||||| ||| ||| |||||||||||||| ||||    
T  107765 attatgagtaaaaaattaacctccaaaattctctcttcccaatatcttctatttcttcaactt 107827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 8396 - 8334
Alignment:
Q  138 attatgagtaaaaaattaacctccaaaatcctctcctcctaatgtcttctatttcttccactt 200  Q
    |||||||||||||||||||| |||||| || |||||||  ||| |||||||||||||||||||    
T  8396 attatgagtaaaaaattaacatccaaagtcatctcctctcaatatcttctatttcttccactt 8334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 74717 - 74769
Alignment:
Q  78 cccctcaaaaccctcttccaatacaatttttgagtttccacaaataaggggga 130  Q
    |||| |||||||||| ||||||||||||||| |||| || ||||| |||||||    
T  74717 ccccccaaaaccctcctccaatacaatttttcagttccctcaaattaggggga 74769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University