View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5621_low_2 (Length: 707)
Name: NF5621_low_2
Description: NF5621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5621_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 98 - 669
Target Start/End: Complemental strand, 15924801 - 15924230
Alignment:
| Q |
98 |
ttcataaaattaaaatggtagacttggataatgttgtataccccattctctttcaagcttatatttcaactggtcaagttctttccctggcaatgaaact |
197 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15924801 |
ttcataaaattaaaatgttagacttgcataatgttgtataccccattctctttcaagcttatatttcaactggtcaagttctttccctggcaatgaaact |
15924702 |
T |
|
| Q |
198 |
tttatcattcttccattgttaccatcatcatcttctggacctggaagaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcaccctaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
15924701 |
tttatcattcttccattgttaccatcatcatcttctggacctggaaaaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcgccctaa |
15924602 |
T |
|
| Q |
298 |
taggtttctttccattaagctttacaccatataaatcagcttcttccaagtctacaaatgttaactttgctccatatacnnnnnnntcatcttttccatc |
397 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
15924601 |
taggtttctttccattaagctttacaccatataaatcagcttcttccaagtctacaaatgttaactttgctccatatacaaaaaaatcatcttttccatc |
15924502 |
T |
|
| Q |
398 |
acctttctccaccaacttttccaatgcataattctcattaannnnnnnctcactaatcagattcattaaatctaatatattatattcctccgggcgcaaa |
497 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15924501 |
acctttctccaccaatttttccaatgcataattctcattaatttttttctcaccaatcagattcattaaatctaatatattatattcctccgggcgcaaa |
15924402 |
T |
|
| Q |
498 |
tttgtttcgattttgctcaacaatatgtcatttgttgggaattcgttttcagcacatttagaggtatttttatttttactacatattgtcacaacttttg |
597 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
15924401 |
tttgtttcgattttgctcaacaatatgtcatttgttgggaattcattttcagcacatttagaggtatttttatttttactacatattgtcacaacctttg |
15924302 |
T |
|
| Q |
598 |
gtccaaagtctcctcttatttgtgctatacatttccatatcatagctgaaataatttcaaaatacttagtat |
669 |
Q |
| |
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|||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15924301 |
gtccaatgtcacctcttatttgtgctatacatttccatatcgtagctgaaataatttcaaaatacttagtat |
15924230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 3e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 3e-81
Query Start/End: Original strand, 131 - 661
Target Start/End: Complemental strand, 13116586 - 13116062
Alignment:
| Q |
131 |
ttgtataccccattctctttcaagcttatatttcaactggtcaagttctttccctggcaatgaaacttttatcattcttccattgttaccatcatcatct |
230 |
Q |
| |
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|||||| ||| |||||| | | || ||| |||||| ||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||||||| |||| |
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| T |
13116586 |
ttgtattcccaattctcctgctagtttacatttcagctggtcaagttcttttcctggcaatgaaactgttatcatccttccattattaccatcagtatct |
13116487 |
T |
|
| Q |
231 |
tctggacctggaagaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcaccctaataggtttctttccattaagctttacaccatata |
330 |
Q |
| |
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||||| ||||||||||||||||||||||||| |||| ||||| || ||||||||||| ||| |||| ||||||| |||||||| ||||| | || | |
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| T |
13116486 |
tctggtcctggaagaaccaaaacaactccttcatcatgaacaccgcggaaatcacaatttaccataatgggtttctgtccattaatctttatctcgtaaa |
13116387 |
T |
|
| Q |
331 |
aatcagcttcttccaagtctacaaatgttaactttgctccatatacnnnnnnntcatcttttccatcacctttctccaccaacttttccaatgcataatt |
430 |
Q |
| |
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||||||| |||||||||||||||||||||||||| |||||||| || | ||||| || ||||| | |||||| | ||||||||| ||| ||| |
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| T |
13116386 |
aatcagcctcttccaagtctacaaatgttaacttagctccataaactataaaatgctctttgccttcaccgtcctccacaattttttccaatacatgatt |
13116287 |
T |
|
| Q |
431 |
ctcattaannnnnnnctcactaatcagattcattaaatctaatatattatattcctccgggcgcaaatttgtttcgattttgctcaacaatatgtcattt |
530 |
Q |
| |
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|||||| | ||| |||||||||| |||||||||||||||| || || || | ||||||||||| ||||||||||||| | ||||| |
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| T |
13116286 |
ctcattcatttttttctcggtaatcagatttgctaaatctaatatattagcttgatcaggtggaaaatttgtttcaattttgctcaacacggagccattt |
13116187 |
T |
|
| Q |
531 |
gttgggaattcgttttcagcacatttagaggtatttttatttttactacatattgtcacaacttttggtccaaagtctcctcttatttgtgctatacatt |
630 |
Q |
| |
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||||||||||| |||||||||| |||||| ||||| || |||||||||||||||| | ||||||| |||||||||||||| |||||||||| |
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| T |
13116186 |
gttgggaattcattttcagcacgattagag------atatttgtagtacatattgtcacaaccgtctgtccaaaatctcctcttatttgcgctatacatt |
13116093 |
T |
|
| Q |
631 |
tccatatcatagctgaaataatttcaaaata |
661 |
Q |
| |
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|||| |||||||||||||||||||||||||| |
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| T |
13116092 |
tccaaatcatagctgaaataatttcaaaata |
13116062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 152; Significance: 4e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 4e-80
Query Start/End: Original strand, 131 - 691
Target Start/End: Complemental strand, 46011718 - 46011164
Alignment:
| Q |
131 |
ttgtataccccattctctttcaagcttatatttcaactggtcaagttctttccctggcaatgaaacttttatcattcttccattgttaccatcatcatct |
230 |
Q |
| |
|
||||||| |||||||| | | || ||| ||||||| ||||||||||||||||| || || |||| | ||| ||| |||||||| ||||||| | |||| |
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| T |
46011718 |
ttgtatatcccattcttgtgctagtttacatttcaattggtcaagttctttcccaggtaaagaaattgttaccatccttccattattaccattgtaatct |
46011619 |
T |
|
| Q |
231 |
tctggacctggaagaaccaaaacaactccttgatcaccgacaccacgtaaatcacaattcaccctaataggtttctttccattaagctttacaccatata |
330 |
Q |
| |
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||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||||| || ||| ||||||| ||||||| |||||||||||| | |
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| T |
46011618 |
tctggtcctgaaagaaccaaaacaactccttgatcacccacaccacgaaaatcacaatttgccaaaattggtttctgcccattaatctttacaccataaa |
46011519 |
T |
|
| Q |
331 |
aatcagcttcttccaagtctacaaatgttaactttgctccatatacnnnnnnntcatcttttccatcacctttctccaccaacttttccaatgcataatt |
430 |
Q |
| |
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||| | |||||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||| ||||| || ||||||||| ||| ||| |
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| T |
46011518 |
aattaccttcttccaaatctacaaatgttaactttgctccataaacaataaaatcatcttttccttcaccttcctccatcattttttccaatccatgatt |
46011419 |
T |
|
| Q |
431 |
ctcattaannnnnnnctcactaatcagattcattaaatctaatatattatattcctccgggcgcaaatttgtttcgattttgctcaacaatatgtcattt |
530 |
Q |
| |
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||| || | |||| ||| || |||| ||| ||| |||| | | ||||| | || ||| ||||||||||||||||||||| | ||||| |
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| T |
46011418 |
ctcgttcatttttttctcagcaattagcttcactaattctgatatttcagattccccaggtgataaacttgtttcgattttgctcaacaccgagccattt |
46011319 |
T |
|
| Q |
531 |
gttgggaattcgttttcagcacatttagaggtatttttatttttactacatattgtcacaacttttggtccaaagtctcctcttatttgtgctatacatt |
630 |
Q |
| |
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|| |||||||| |||||||| | |||||| ||||| || |||||||||||||||| | |||||||||| ||||||||||||| ||||||||| |
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| T |
46011318 |
gtcgggaattcattttcagcgcgattagag------atatttgtagtacatattgtcacaaccctaggtccaaagtttcctcttatttgtcctatacatt |
46011225 |
T |
|
| Q |
631 |
tccatatcatagctgaaataatttcaaaatacttagtattggcatggaaattgatattggt |
691 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| || |||| || || |||||||||||| |
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|
| T |
46011224 |
tccaaatcatagctgaaataatttcaaaatactttgtcttggtattgatattgatattggt |
46011164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 628 - 664
Target Start/End: Complemental strand, 10420029 - 10419993
Alignment:
| Q |
628 |
atttccatatcatagctgaaataatttcaaaatactt |
664 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||| |
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|
| T |
10420029 |
atttccatatcatcgctgaaataatttcaaaatactt |
10419993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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