View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5621_low_4 (Length: 444)
Name: NF5621_low_4
Description: NF5621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5621_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 64 - 421
Target Start/End: Original strand, 13652929 - 13653286
Alignment:
| Q |
64 |
acatcatcatctttcaactccaatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttg |
163 |
Q |
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| T |
13652929 |
acatcatcatctttcaactccaatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttg |
13653028 |
T |
|
| Q |
164 |
gaagcaccacaacaatgacgagagaagaaatacttgagttttggcacggtttgttaaacagcaaaaaagcattcttgtgggtgattagaccaaacatggt |
263 |
Q |
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| T |
13653029 |
gaagcaccacaacaatgacgagagaagaaatacttgagttttggcacggtttgttgaacagcaaaaaagcattcttgtgggtgattagaccaaacatggt |
13653128 |
T |
|
| Q |
264 |
acaagaaaaaacactaataaaagaacttaaggaaaggactactaaggagagaggtttgattgtggagtgggctccacaagaggaagttttgtcacatgag |
363 |
Q |
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| T |
13653129 |
acaagaaaaaagactaataaaagaacttgaggaagggactagtaaggagaaaggtttgattgtggagtgggctccacaagaggaagttttgtcacataag |
13653228 |
T |
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| Q |
364 |
gcaattggtgcttttttgacacatagtggatggaattctactttggagagtgtggttt |
421 |
Q |
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| T |
13653229 |
gcaattggtgcttttttgacacatagtggatggaattctactttggagagtgtggttt |
13653286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 84 - 421
Target Start/End: Original strand, 13658422 - 13658759
Alignment:
| Q |
84 |
caatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacg |
183 |
Q |
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| T |
13658422 |
caatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaatgaag |
13658521 |
T |
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| Q |
184 |
agagaagaaatacttgagttttggcacggtttgttaaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaacactaataa |
283 |
Q |
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| T |
13658522 |
ggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaaccatttttgtgggtgattaggccaaacatggtacaagaaaaaggactattga |
13658621 |
T |
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| Q |
284 |
aagaacttaaggaaaggactactaaggagagaggtttgattgtggagtgggctccacaagaggaagttttgtcacatgaggcaattggtgcttttttgac |
383 |
Q |
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| T |
13658622 |
aggagcttgaggaagggactactaaagagaaagggatgattgtggggtgggttccacaagaggaagttttgtcacacaaagcaattggtgcctttttgac |
13658721 |
T |
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| Q |
384 |
acatagtggatggaattctactttggagagtgtggttt |
421 |
Q |
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| T |
13658722 |
acatagtggatggaattctactttggagagtgtggttt |
13658759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 84 - 421
Target Start/End: Original strand, 13647894 - 13648231
Alignment:
| Q |
84 |
caatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacg |
183 |
Q |
| |
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||||||||||||||||||||||||||||||| | ||||| || |||||||| ||||| |||||| |||||||||||||||||||||| ||| |||||| | |
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| T |
13647894 |
caatttcttcaaagtggatagaacctgcatggcgtggcttgactctcaaccattgaaatcagttatatatgttagctttggaagcactacaccaatgaag |
13647993 |
T |
|
| Q |
184 |
agagaagaaatacttgagttttggcacggtttgttaaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaacactaataa |
283 |
Q |
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| T |
13647994 |
agagaagaaataattgagatttggcatggtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaa |
13648093 |
T |
|
| Q |
284 |
aagaacttaaggaaaggactactaaggagagaggtttgattgtggagtgggctccacaagaggaagttttgtcacatgaggcaattggtgcttttttgac |
383 |
Q |
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| T |
13648094 |
gtgagcttgaggaagggactcgtaaggaaaaaggtttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcttttttgac |
13648193 |
T |
|
| Q |
384 |
acatagtggatggaattctactttggagagtgtggttt |
421 |
Q |
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||||| ||| |||||||| |||||||| |||||||||| |
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| T |
13648194 |
acataatgggtggaattcaactttggaaagtgtggttt |
13648231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 352 - 401
Target Start/End: Complemental strand, 20156911 - 20156862
Alignment:
| Q |
352 |
ttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattc |
401 |
Q |
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| T |
20156911 |
ttgtcacataaagcaataggtgcatttttgacacattgtggatggaattc |
20156862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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