View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5621_low_5 (Length: 422)
Name: NF5621_low_5
Description: NF5621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5621_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 10 - 408
Target Start/End: Complemental strand, 594351 - 593952
Alignment:
| Q |
10 |
aatatcctctaaatcccttcttttctttatatacaacagtattgatcgtttattctcctagttttccaagttttggtttctgagcgatcga----tcgat |
105 |
Q |
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| T |
594351 |
aatatcctctaaatcccttcttttctttatataca---gtattgatcgtttattctcctagttttccaagttttggtttctgagcgagcgagcgatcgat |
594255 |
T |
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| Q |
106 |
caaatctgattttctctttcgttcatcgaatcatacacgaatctcgtttattttccgttcaaaatccgtgggaatcgatccaattattggtggtttgaaa |
205 |
Q |
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| T |
594254 |
caaatctgattttctctttcgttcatcgaatcatacacgaatctcgtttattttccgttcaaaatccgtgggaatcgatccaattattggtggtttgaaa |
594155 |
T |
|
| Q |
206 |
accctaatctgaaaaaatgggtggcggccaagagaatcgtcctcctcctccgcagtatcaaggcggttggaattcgagggaggctccggtcatgaagaaa |
305 |
Q |
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| T |
594154 |
accctaatctgaaaaaatgggtggcggccaagagaatcgtcctcctcctccgcagtatcaaggcggttggaattcgagggaggctccggtcatgaagaaa |
594055 |
T |
|
| Q |
306 |
ggtaatgctaactaaatctttagaattatgattttgatgatgataatggttaaactataatatctatcagatagatcatgttgtaacctaatatatacta |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
594054 |
ggtaatgctaactaaatctttagaattatgattttgatgatgataatggttaaactataatatctatcagatagataatgttgtaacctaatatatacta |
593955 |
T |
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