View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5621_low_6 (Length: 395)
Name: NF5621_low_6
Description: NF5621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5621_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 41171815 - 41172196
Alignment:
| Q |
1 |
agcttcataaaccaagttcannnnnnnggaggccaaaccacgttgatcttattattactaattactccattaatttattaaatagaatgggcttttggag |
100 |
Q |
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| T |
41171815 |
agcttcataaaccaagttcatttttttggaggccaaaccacgttgatcttattattactaattactccattaatttattaaatagaatgggcttttggag |
41171914 |
T |
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| Q |
101 |
cctaagctccaaagcatcaacttatttctctaacctagattcatcaaagggtatggtatgtaggcctcaccagattatatgcttcaagtatatataggtc |
200 |
Q |
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| T |
41171915 |
cctaagccccaaagcatcaacttatttct--aacctagattcatcaaagggtatggtatgtaggcctcaccagattatatgcttcaagtatatataggtc |
41172012 |
T |
|
| Q |
201 |
actccctagacgttaatgaaaagaaacaacaaaattaaatataattagctgaaacagaaattaaaatcatctcagatacagaactcaaatagaaattaat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41172013 |
actccctagacgttaatgaaaagaaacaacaaaattaaatataattagctgaaacagaaattaaaatcatctcagatacagaactcaaatagaaattaat |
41172112 |
T |
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| Q |
301 |
ctgattacacttgaaatctagcgacagtatgaatttaaagaacctaatatagcctaaatcaagaaaactaggtatctgtgctgc |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41172113 |
ctgattacacttgaaatctagcgacagtatgaatttaaagaacctaatatagcctaaatcaagaaaactaggtatctgggctgc |
41172196 |
T |
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