View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5621_low_9 (Length: 281)
Name: NF5621_low_9
Description: NF5621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5621_low_9 |
 | |
|
| [»] scaffold0006 (2 HSPs) |
| | |
|
| [»] scaffold0069 (2 HSPs) |
| | |
|
| [»] scaffold0238 (1 HSPs) |
| | |
|
| [»] scaffold0402 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 13614999 - 13614740
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | |||||| ||| || |
|
|
| T |
13614999 |
aagtattccaagttttcaaatacgatgttttcctctgctttttcttcatcaatcttcacaacatctaacatcttctcacaattcattactattaatgttt |
13614900 |
T |
|
| Q |
101 |
tgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcga |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
13614899 |
tgagttgaactaggcttttagctgttgaatatgttatcaaatagatcagctctttgcagttgtccactatcaaataggttaaatttgtgaaagatgtcga |
13614800 |
T |
|
| Q |
201 |
cgatggcgccaagcttattaaacttgcacaattccttacagataagccttcaagatattg |
260 |
Q |
| |
|
|||||| |||| ||||| ||||||| ||||||| |||| ||| ||||||||||||| |
|
|
| T |
13614799 |
cgatggtaccaaacttatcaaacttggacaattcagtacacgtaaatcttcaagatattg |
13614740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 13519921 - 13519662
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | ||| || ||| || |
|
|
| T |
13519921 |
aagtattccaagttttcaaatacgatgttttcctctgctttttcttcatcaatcttcacaacatctaacatcttctcacaattcattattattaatgttt |
13519822 |
T |
|
| Q |
101 |
tgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13519821 |
tgagttgaactaggcttttagctgttgaatatggtatcaaatagatgagctctttgcagttgtccactttcaaataggttaaatttgtgaaagatgtcga |
13519722 |
T |
|
| Q |
201 |
cgatggcgccaagcttattaaacttgcacaattccttacagataagccttcaagatattg |
260 |
Q |
| |
|
||| |||||||||| ||||||| ||||||| |||| ||| ||||||||||||| |
|
|
| T |
13519721 |
agataataccaagcttatcaaacttggacaattcagtacacgtaaatcttcaagatattg |
13519662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 19133804 - 19134063
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctt |
100 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||| ||| ||||||| |||||||||||||| ||||| ||||||||||||||| | ||| || ||| || |
|
|
| T |
19133804 |
aagtgttccaggttttcaaatatgatgttttcctctgctttttcatcatcaatcttcacaacatccaacatcttctcacaattcattattattaatgttt |
19133903 |
T |
|
| Q |
101 |
tgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcga |
200 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||| || |
|
|
| T |
19133904 |
tgagttgaactaggcttttggcagttgaatatgttatcaaatagatcagctctttgcagttgtccacttccaaataggttaaatttgtgaaagatgttga |
19134003 |
T |
|
| Q |
201 |
cgatggcgccaagcttattaaacttgcacaattccttacagataagccttcaagatattg |
260 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||||| |||| |||| |||||| |||||| |
|
|
| T |
19134004 |
cgatggtaccaagcttatcaaacttggacaattcagtacacataactcttcaatatattg |
19134063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 20380637 - 20380374
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| |||| || || ||||||||||||||||| ||||||||||||||| || ||| ||| ||| |
|
|
| T |
20380637 |
aagtattccaagttttcaaatacgatgttttcctctgctttatcatcgtcaatcttcacgacatccaacatcttctcacaattaattatgtttaatgctt |
20380538 |
T |
|
| Q |
101 |
tgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcga |
200 |
Q |
| |
|
||||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||| |
|
|
| T |
20380537 |
tgagttgaactagacttttagctgttgaaatttttatcaaatagatcaactctttgcagttgtccacttttaaatgggttaaatttgtgaaagatgtcga |
20380438 |
T |
|
| Q |
201 |
cgatggcgccaagcttattaaacttgcacaattccttacagataagccttcaagatattgtaac |
264 |
Q |
| |
|
||||| |||||||||| ||||||| ||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
20380437 |
tgatggtaccaagcttatcaaacttggacaattcactacacgtaactcttcaagatattgtaac |
20380374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 13439301 - 13439107
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||| | ||| || ||| || |
|
|
| T |
13439301 |
aagtattccaagttttcaaatacgatgttttcctctgctttttcttcatcaatcttcacaacatctaacatcttctcacaattcattattattaatgttt |
13439202 |
T |
|
| Q |
101 |
tgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagat |
195 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
13439201 |
tgagttgaactaggcatttagctgttgaatatgttatcaaatagatcaactctttgcaattgtccactttcaaataggttaaacttgtgaaagat |
13439107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 16445928 - 16446191
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||||||| | ||| | ||| | |
|
|
| T |
16445928 |
aagtattccaagttttcaaatatgatgttttcttctgctttttcttcatcaatcttcacaacatccaacatcttctcacaattctttatttttaatgttg |
16446027 |
T |
|
| Q |
101 |
tgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcga |
200 |
Q |
| |
|
||||||||| || ||||||||| |||||| ||||||||||||| |||| ||||||||| |||||||| |||||| | ||||||||||||||||||| || |
|
|
| T |
16446028 |
tgagttgaattaagcttttagcagttgaagatgttatcaaataaatcatctctttgcaattgtccactgtcaaattgattaaatttgtgaaagatgttga |
16446127 |
T |
|
| Q |
201 |
cgatggcgccaagcttattaaacttgcacaattccttacagataagccttcaagatattgtaac |
264 |
Q |
| |
|
||||| |||||||||| |||| || ||||||| |||||||||| |||| |||||||||||| |
|
|
| T |
16446128 |
tgatggtaccaagcttatcaaacatgggcaattccgtacagataagtcttccagatattgtaac |
16446191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 13689447 - 13689214
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||| |||||||||||||||||||||| |||| ||||||||||||||| | || || ||| || |
|
|
| T |
13689447 |
aagtattccaagttttcaaatatgatgtcctcctctcctttttcttcatcaatcttcacagcatccaacatcttctcacaattctctattattaatgttt |
13689348 |
T |
|
| Q |
101 |
tgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||| | |
|
|
| T |
13689347 |
tgagttgaactaggcttttagctgttgaatatgttatcaaatagaccaactctttgcaattgtccactttcaaataggttaaatttgtgaaagatgcgaa |
13689248 |
T |
|
| Q |
201 |
cgatggcgccaagcttattaaacttgcacaattc |
234 |
Q |
| |
|
|| ||| |||||||||| ||||||| ||||||| |
|
|
| T |
13689247 |
cggtggtaccaagcttatcaaacttggacaattc |
13689214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 20507967 - 20508228
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctt |
100 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||| ||||| ||||||||||||| || ||||| |||| |||||||||| | ||| | ||| || |
|
|
| T |
20507967 |
aagtattccaggttttcaaatacaatgttttcctctgcttttccttcatcaatcttaacaacatccaacaacttctcacaattcattatttttaatgttt |
20508066 |
T |
|
| Q |
101 |
tgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcga |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||| |||| |
|
|
| T |
20508067 |
tgagttgaactaggcttttagctgttgaatatgttatcaaatagatcagctctttgcagttgtccactttcaaatgggttaaatttgtgaaagatatcga |
20508166 |
T |
|
| Q |
201 |
cgatggcgccaagcttattaaacttgcacaattccttacagataagccttcaagatattgta |
262 |
Q |
| |
|
||||| |||| ||| ||||||| | |||| ||| |||||| |||| |||||||| ||||| |
|
|
| T |
20508167 |
agatggtaccaaactttttaaactcggacaactccatacagaaaagcattcaagatgttgta |
20508228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 13555287 - 13555054
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctt |
100 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||| ||||||||||||||| ||||| ||||| ||||||||||||||| | ||| | ||| || |
|
|
| T |
13555287 |
aagtattccaggttttcaaatacaatgttttcctctgctttttcttcatcaactttcacaacatccaacatcttctcacaattctttatttttaatgttt |
13555188 |
T |
|
| Q |
101 |
tgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcga |
200 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||| |||||| | ||||||||||||| |||||||||||||||| |
|
|
| T |
13555187 |
tgagttgaactagacttttagctgttgaatatgttatcaaatagatcagctctttgcagtcgtccacttccaaataggttaaacttgtgaaagatgtcga |
13555088 |
T |
|
| Q |
201 |
cgatggcgccaagcttattaaacttgcacaattc |
234 |
Q |
| |
|
|||||| |||| ||||| ||||||| ||||||| |
|
|
| T |
13555087 |
cgatggtaccaaacttatcaaacttggacaattc |
13555054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 15893391 - 15893646
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctt |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||||||| | ||||||||| | ||||||||||||||||| ||||||||||||||| | ||| | ||| || |
|
|
| T |
15893391 |
aagttttccaagttttcaaatacaatgttttccttttctttttcattgtcaatcttcacgacatccaacatcttctcacaattctttatttttaatgttt |
15893490 |
T |
|
| Q |
101 |
tgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcga |
200 |
Q |
| |
|
||||||||||| |||||| || |||||| |||||||||||||| ||| |||||||| || ||||| | ||| | ||||||||||||||||||||| || |
|
|
| T |
15893491 |
ggagttgaactaagctttttgctgttgaagatgttatcaaataggtcagttctttgcaattttccacttccaacttggttaaatttgtgaaagatgttga |
15893590 |
T |
|
| Q |
201 |
cgatggcgccaagcttattaaacttgcacaattccttacagataagccttcaagat |
256 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| |||| | ||| ||||||||| |
|
|
| T |
15893591 |
tgatggtaccaagcttattaaacttggacaattcgatacataaaagtcttcaagat |
15893646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 184
Target Start/End: Original strand, 19341333 - 19341512
Alignment:
| Q |
5 |
attccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctttgag |
104 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||||||||||||||||| || ||||| |||||| |||||||| | | || ||||| | |||||| |
|
|
| T |
19341333 |
attccaagttttcaaatatgacttcttcctcttctttttcttcatcaatcttgacaacatccaacatcatctcacaatttgctatgactaatcttttgag |
19341432 |
T |
|
| Q |
105 |
ttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaat |
184 |
Q |
| |
|
||| || || |||||||| ||| |||||||||||| ||||| ||||||| |||| |||| ||||| |||||||| |
|
|
| T |
19341433 |
ttgtacaagacttttagctgttttggttgttatcaaataaatcaaacctttgcaattgttaacctccaaatcggttaaat |
19341512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 16493339 - 16493569
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagtta-ctactaagcct |
99 |
Q |
| |
|
|||||||||||||||| ||| |||| | ||| ||| |||||||||| ||||||||||| |||||||||||| ||||||| | ||| || | | | | |
|
|
| T |
16493339 |
aagtattccaagtttttaaacatgacatcttcctctactttttcttcgtcaatcttcacaacatctaacatcagctcacaatttcttatcttcaatgt-t |
16493437 |
T |
|
| Q |
100 |
ttgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcg |
199 |
Q |
| |
|
| |||||||||| ||||||||| || ||| ||||||||||||| || | ||||||||| ||||||||| ||||| || | |||||||||||||| | |
|
|
| T |
16493438 |
gtaagttgaactaagcttttagctgtggaagatgttatcaaataaataagctctttgcaattgtccaccgacaaatttttttattttgtgaaagatgttg |
16493537 |
T |
|
| Q |
200 |
acgatggcgccaagcttattaaacttgcacaa |
231 |
Q |
| |
|
||||||| ||||| |||| ||| ||| |||| |
|
|
| T |
16493538 |
acgatggaaccaagtttatcaaatttggacaa |
16493569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 19332744 - 19332818
Alignment:
| Q |
6 |
ttccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcaca |
80 |
Q |
| |
|
||||||||||||||||||||| | ||||||| |||| |||| ||||| |||||| |||||||||||||| ||||| |
|
|
| T |
19332744 |
ttccaagttttcaaatatgatttcttcttctgctttctcttgatcaaccttcacaacatctaacatcttttcaca |
19332818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 38048734 - 38048995
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| |||||| ||||||||||||||| | ||| | ||| || |
|
|
| T |
38048734 |
aagtattccaagttttcaaatatgatgttttcctctgctttttcatcatcaatcttcatgacatccaacatcttctcacaattctttatttttaatgttt |
38048833 |
T |
|
| Q |
101 |
tgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcga |
200 |
Q |
| |
|
||||||||||| |||||| || |||||| |||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
38048834 |
ggagttgaactaagcttttcgctgttgaagatgttatcaaatagatcagctctttgcagttgtccacttccaaataggttaaatttgtgaaagatgtcgc |
38048933 |
T |
|
| Q |
201 |
cgatggcgccaagcttattaaacttgcacaattccttacagataagccttcaagatattgta |
262 |
Q |
| |
|
|||||| |||||||||| ||||||| ||||||| |||| ||||| |||||||| ||||| |
|
|
| T |
38048934 |
cgatggtaccaagcttatcaaacttggacaattcactacatataagttttcaagatgttgta |
38048995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 129; Significance: 8e-67; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 62242 - 62010
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||| ||||| ||||||||||||||| | ||| || ||| || |
|
|
| T |
62242 |
aagtattccaagttttcaaatatgatgtcttcctctcctttttcttcatcaatcttcacaacatccaacatcttctcacaattcattattattaatgttt |
62143 |
T |
|
| Q |
101 |
tgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcga |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||| |||||| | ||| | ||||||||||||||||||||| || |
|
|
| T |
62142 |
tgagttgaactaggcttttagctgttgaagatgttatcaaatagatcagctctttgcagtcgtccacttccaacttggttaaatttgtgaaagatgtaga |
62043 |
T |
|
| Q |
201 |
cgatggcgccaagcttattaaacttgcacaatt |
233 |
Q |
| |
|
|||||| |||||||||| ||||||| |||||| |
|
|
| T |
62042 |
cgatggtaccaagcttatcaaacttggacaatt |
62010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 177776 - 177505
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctt |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||| |||| || || ||||| ||||||||||| ||||||||||||||| |||||| ||| ||| |
|
|
| T |
177776 |
aagtattccagattttcaaatatgatgttttcctctgctttatcatcgtcaatattcacgacatccaacatcttctcacaattagttatgtttaatgctt |
177677 |
T |
|
| Q |
101 |
tgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcga |
200 |
Q |
| |
|
||||||||||||| |||||||| |||||| | ||||||||||||||||||||| |||||||||||| || |||| |||||||||||||||||||||||| |
|
|
| T |
177676 |
tgagttgaactagacttttagctgttgaaatttttatcaaatagatcaactcttcgcagttgtccacttttaaatgggttaaatttgtgaaagatgtcga |
177577 |
T |
|
| Q |
201 |
cgatggcgccaagcttattaaacttgcacaattccttacagataagccttcaagatattgtaactgatgatg |
272 |
Q |
| |
|
||||| |||||||||| ||||||| ||||||| |||| ||| ||||||||||||||||| ||||||| |
|
|
| T |
177576 |
tgatggtaccaagcttatcaaacttggacaattcactacatgtaactcttcaagatattgtaacagatgatg |
177505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 45330 - 45067
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| |||| || || ||||||||||||||||| ||||||||||||||| || ||| ||| ||| |
|
|
| T |
45330 |
aagtattccaagttttcaaatacgatgttttcctctgctttatcatcgtcaatcttcacgacatccaacatcttctcacaattatttatgtttaatgctt |
45231 |
T |
|
| Q |
101 |
tgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcga |
200 |
Q |
| |
|
||||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||| |
|
|
| T |
45230 |
tgagttgaactagacttttagctgttgaaatttttatcaaatagatcaactctttgcagttgtccacttttaaattggttaaatttgtgaaagatgtcga |
45131 |
T |
|
| Q |
201 |
cgatggcgccaagcttattaaacttgcacaattccttacagataagccttcaagatattgtaac |
264 |
Q |
| |
|
||||| |||||||||| ||||||| ||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
45130 |
tgatggtaccaagcttatcaaacttggacaattcactacacgtaactcttcaagatattgtaac |
45067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0069; HSP #2
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 60426 - 60163
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| |||| || || |||||||| |||||||| ||||||||||||||| || ||| ||| ||| |
|
|
| T |
60426 |
aagtattccaagttttcaaatacgatgttttcctctgctttatcatcgtcaatctttacgacatccaacatcttctcacaattatttatgtttaatgctt |
60327 |
T |
|
| Q |
101 |
tgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcga |
200 |
Q |
| |
|
||||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||| |
|
|
| T |
60326 |
tgagttgaactagacttttagctgttgaaatttttatcaaatagatcaactctttgcagttgtccacttttaaatgggttaaatttgtgaaagatgtcga |
60227 |
T |
|
| Q |
201 |
cgatggcgccaagcttattaaacttgcacaattccttacagataagccttcaagatattgtaac |
264 |
Q |
| |
|
||||| |||||||||| ||||||| ||||||| |||| ||| ||||||||||||||||| |
|
|
| T |
60226 |
tgatggtaccaagcttatcaaacttggacaattcactacacgtaactcttcaagatattgtaac |
60163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 20766276 - 20766539
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctt |
100 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||| |||| || || |||||||| |||||||| ||||||||||||||| |||||| ||| ||| |
|
|
| T |
20766276 |
aagtattccaagttttcaaatacgatgttttcctctgctttatcatcgtcaatctttacgacatccaacatcttctcacaattagttatgtttaatgctt |
20766375 |
T |
|
| Q |
101 |
tgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcga |
200 |
Q |
| |
|
||||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||| |
|
|
| T |
20766376 |
tgagttgaactagacttttagctgttgaaatttttatcaaatagatcaactctttgcagttgtccacttttaaatgggttaaatttgtgaaagatgtcga |
20766475 |
T |
|
| Q |
201 |
cgatggcgccaagcttattaaacttgcacaattccttacagataagccttcaagatattgtaac |
264 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||| |||| |||| ||||||||||||||||| |
|
|
| T |
20766476 |
tgatgataccaagcttatcaaacttggacaattcactacacataactcttcaagatattgtaac |
20766539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0238 (Bit Score: 114; Significance: 7e-58; HSPs: 1)
Name: scaffold0238
Description:
Target: scaffold0238; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 26049 - 26254
Alignment:
| Q |
1 |
aagtattccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctt |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||| |||||||||||||||||||||| ||||| |||| ||| |||||| | ||| | ||| || |
|
|
| T |
26049 |
aagtgttccaagttttcaaatatgatgtcctcctctcctttttcttcatcaatcttcacaacatccaacaacttttcacaattcattatttgtaatgttt |
26148 |
T |
|
| Q |
101 |
tgagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcga |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
26149 |
tgagttgaactaggcttttagctgttgaatatgttatcaaatagatcagctctttgcagctgtccactttcaaataggttaaatttgtgaaagatgtcga |
26248 |
T |
|
| Q |
201 |
cgatgg |
206 |
Q |
| |
|
||||| |
|
|
| T |
26249 |
agatgg |
26254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 9e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 5 - 264
Target Start/End: Original strand, 22270899 - 22271164
Alignment:
| Q |
5 |
attccaagttttcaaatatgatgttttcttcttctttttcttc---atcaatcttcacgacatctaacatcttctcacaagtagttactactaagccttt |
101 |
Q |
| |
|
|||||| ||||||||||| ||||||||| ||| |||||||||| |||||| ||||| ||||| ||||||||||||||| | ||| | ||| ||| |
|
|
| T |
22270899 |
attccaggttttcaaataggatgttttcctctactttttcttcgtgatcaattttcacaacatccaacatcttctcacaattctttatttttaatgtttt |
22270998 |
T |
|
| Q |
102 |
gagttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaatttgtgaaagatgtcgac |
201 |
Q |
| |
|
|||||||||||| ||||| || |||| | ||||||||||| |||| | |||| ||||||||||||| |||||| |||||||||||||||||||| ||| |
|
|
| T |
22270999 |
gagttgaactagactttttgctgttgtagatgttatcaaacagattagctctatgcagttgtccactaccaaatatgttaaatttgtgaaagatgttgac |
22271098 |
T |
|
| Q |
202 |
gatggcg---ccaagcttattaaacttgcacaattccttacagataagccttcaagatattgtaac |
264 |
Q |
| |
|
|||| | |||||||||| ||||||| ||||||| |||| ||||| |||||||||||||||| |
|
|
| T |
22271099 |
gatgatggtaccaagcttatcaaacttggacaattcactacacataagttttcaagatattgtaac |
22271164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 184
Target Start/End: Original strand, 4396 - 4575
Alignment:
| Q |
5 |
attccaagttttcaaatatgatgttttcttcttctttttcttcatcaatcttcacgacatctaacatcttctcacaagtagttactactaagcctttgag |
104 |
Q |
| |
|
||||||||||||||||||||| | ||| ||||||||||||||||||||||| || ||||| |||||| |||||||| | | || ||||| | |||||| |
|
|
| T |
4396 |
attccaagttttcaaatatgacttcttcctcttctttttcttcatcaatcttgacaacatccaacatcatctcacaatttgctatgactaatcttttgag |
4495 |
T |
|
| Q |
105 |
ttgaactaggcttttagccgttgaatatgttatcaaatagatcaactctttgcagttgtccaccttcaaataggttaaat |
184 |
Q |
| |
|
||| || || |||||||| ||| |||||||||||| ||||| ||||||| |||| |||| ||||| |||||||| |
|
|
| T |
4496 |
ttgtacaagacttttagctgttttggttgttatcaaataaatcaaacctttgcaattgttaacctccaaatcggttaaat |
4575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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