View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5622_low_1 (Length: 444)
Name: NF5622_low_1
Description: NF5622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5622_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 34 - 186
Target Start/End: Complemental strand, 19884817 - 19884668
Alignment:
| Q |
34 |
tgtgcctgtttggatttgagtttcaaatcacggtgggcatgaaatagcgcttcccaaagcaagaaaaaagtgaaaataaagaagctaacttttgtagctt |
133 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
19884817 |
tgtgcctgtttggatttgagtttcaaatcacggtgg-catgaaatagcgcttcccaaggcaagaaaaaagtgaaaataaagaagctaacttttgtagctt |
19884719 |
T |
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| Q |
134 |
ttcaaaaaacgtggnnnnnnnnnncattttcaccggtatagcaaacatgctat |
186 |
Q |
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| T |
19884718 |
ttcaaaaaacgtgg--ttttttttcattttcaccggtatagcaaacatgctat |
19884668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 37 - 185
Target Start/End: Complemental strand, 26841160 - 26841015
Alignment:
| Q |
37 |
gcctgtttggatttgagtttcaaatcacggtgggcatgaaatagcgcttcccaaagcaagaaaaaagtgaaaataaagaagctaacttttgtagcttttc |
136 |
Q |
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| T |
26841160 |
gcctgtttggatttgagtttcaaatcacggtgg-catgaaatagcgcttcccaaggcaagaaaaaagtgaaaataaagaagttaacttttatagcttttg |
26841062 |
T |
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| Q |
137 |
aaaaaacgtggnnnnnnnnnncattttcaccggtatagcaaacatgcta |
185 |
Q |
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| T |
26841061 |
aaaaaacgtgg--ttttttttcattttcaccggtatagcaaacatgcta |
26841015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 185
Target Start/End: Complemental strand, 43679827 - 43679683
Alignment:
| Q |
40 |
tgtttggatttgagtttcaaatcacggtgggcatgaaatagcgcttcccaaagcaagaaaaaagtg-aaaataaagaagctaacttttgtagcttttcaa |
138 |
Q |
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| T |
43679827 |
tgtttggattagattttcaaatcacgatgg-catgaaatatcgcttcccaaggcaagaaaaaagtgaaaaacaaagaagttaacttttgtagcttttgaa |
43679729 |
T |
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| Q |
139 |
aaaacgtggnnnnnnnnnncattttcaccggtatagcaaacatgcta |
185 |
Q |
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| T |
43679728 |
caaacgtgg-tttttttttcattttcaccggtatagcaaacatgcta |
43679683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 30707575 - 30707465
Alignment:
| Q |
36 |
tgcctgtttggatttgagtttcaaatcacggtgggcatgaaatagcgcttcccaaagcaagaaaaaagtgaaaataaagaagctaacttttgtagctttt |
135 |
Q |
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| T |
30707575 |
tgcctgtttggatttgattttgaaatcacgttagg-atcaaatatcgcttcccaaggcaagacaaacgtgaaaataaagaagctaacttttttagcttct |
30707477 |
T |
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| Q |
136 |
caaaaaacgtgg |
147 |
Q |
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| T |
30707476 |
gaaaaaacgtgg |
30707465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 103 - 135
Target Start/End: Complemental strand, 4460317 - 4460285
Alignment:
| Q |
103 |
gtgaaaataaagaagctaacttttgtagctttt |
135 |
Q |
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| T |
4460317 |
gtgaaaataaagaagctaccttttgtagctttt |
4460285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 147
Target Start/End: Complemental strand, 32743645 - 32743535
Alignment:
| Q |
36 |
tgcctgtttggatttgagtttcaaatcacggtgggcatgaaatagcgcttcccaaagcaagaaaaaagtgaaaataaagaagctaacttttgtagctttt |
135 |
Q |
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||||||||||||||||| ||| |||||||| | || || ||||| ||||||||| |||||| ||| |||||||||||||||||||||||| |||||| | |
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| T |
32743645 |
tgcctgtttggatttgattttaaaatcacgttagg-atcaaatatagcttcccaaggcaagacaaacgtgaaaataaagaagctaacttttttagcttct |
32743547 |
T |
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| Q |
136 |
caaaaaacgtgg |
147 |
Q |
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||||||||||| |
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| T |
32743546 |
gaaaaaacgtgg |
32743535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 10899475 - 10899586
Alignment:
| Q |
35 |
gtgcctgtttggatttgagtttcaaatcacggtgggcatgaaatagcgcttcccaaagcaagaaaaaagtgaaaataaagaagctaacttttgtagcttt |
134 |
Q |
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|||||||||||||||| | ||| ||||||| | || || ||||| |||||||||| |||||| ||| |||||||||||||||||||||||| |||||| |
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| T |
10899475 |
gtgcctgtttggatttaattttgaaatcacattagg-atcaaatatcgcttcccaaggcaagacaaacgtgaaaataaagaagctaacttttttagcttc |
10899573 |
T |
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| Q |
135 |
tcaaaaaacgtgg |
147 |
Q |
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| T |
10899574 |
tgaaaaaacgtgg |
10899586 |
T |
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