View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5623-Insertion-3 (Length: 708)
Name: NF5623-Insertion-3
Description: NF5623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5623-Insertion-3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 289 - 708
Target Start/End: Original strand, 47734792 - 47735220
Alignment:
| Q |
289 |
tcattctttttgaaagtttggtcttccaattattaaatattgtctttcaataatcaatttaatcttccaataaatttttacctagttaatccggatatat |
388 |
Q |
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| T |
47734792 |
tcattctttttgaaagtttggtcttccaattattaaatattgtctttcaataatcaatttaatcttccaataaatttttacctagttaatccggatatat |
47734891 |
T |
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| Q |
389 |
taggaatgttgtaacgacactccttcacaaatttaaaaagaaatgagaattggtctaagagaaatgttaaccgcttat-----cttaagaacagcagtt- |
482 |
Q |
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| T |
47734892 |
taggaacgttgtaacgacactccttcacgaatttaaaaagaaatgagaattggtctaagagaaatgttaaccgcttatcttaacttaagaacaggagtta |
47734991 |
T |
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| Q |
483 |
nnnnnnnccaatatagcatcattctttgaaaaagattgtactcaactattttaaagtt--nnnnnnnnnnnctcaac-ttttaattttgttaactagtat |
579 |
Q |
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| T |
47734992 |
aaaaaaaccaatatagcatcattcttttaaaaagattgtactcaactattttaaagttaaaaaaaaaaaaactcaactttttaattttgttaactagtat |
47735091 |
T |
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| Q |
580 |
ctttaggtatttgttaacatcacgtttaatctaaaaccatatacattaatggaagcattgaaaaaacacattgttatcttgtatgtatcagattttacga |
679 |
Q |
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| T |
47735092 |
ctttaggtatttgttaacatcacgtttaatctaaaaccatatacattaatggaagcattgaaaaaacacattgttatcttgtatgtatcagattttacga |
47735191 |
T |
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| Q |
680 |
caaggcaagggcatgcattattttttgag |
708 |
Q |
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| T |
47735192 |
caaggcaagggcatgcattattttttgag |
47735220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 8 - 281
Target Start/End: Original strand, 47734484 - 47734757
Alignment:
| Q |
8 |
tcaacctatcctattatgccgtgtgtacatgtctattaaaatgctttgtggggttgcctttctttttcatcacattcctgctatgtcagttttgatgctt |
107 |
Q |
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| T |
47734484 |
tcaacctctcctattatgccgtgtgtacatgtctattaaaatgctttgtggggttgcctttctttttcatcacattcctgctatgtcagttttgatgctt |
47734583 |
T |
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| Q |
108 |
gcttttaaatacctacaataccgtaaaaagaaacatttcttcataggtcttattccactaacaagctgctgaaaatacaagtcaatacattaaataagag |
207 |
Q |
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| T |
47734584 |
gcttttaaatacctacaataccgtaaaaagaaacatttcttcgtaggtcttattccactaacaagctgctgaaaatacaagtcaatacattaaataagag |
47734683 |
T |
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| Q |
208 |
ggtaactattcattttaatcctaatcaaatgcttaaagcattgtctttataatccttaaatatattataatcat |
281 |
Q |
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| T |
47734684 |
ggtaactattcattttaatcctaatcaaatgcttaaagcattgtctttataatccttaaatatattataatcat |
47734757 |
T |
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