View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5623-Insertion-4 (Length: 570)
Name: NF5623-Insertion-4
Description: NF5623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5623-Insertion-4 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 4e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 39 - 338
Target Start/End: Complemental strand, 2871843 - 2871543
Alignment:
| Q |
39 |
ttagacaattaa-aatttactaagatgaagtgattgagttgttttctcaatgggatcaatcactttaaattcctaaactcactcataaccctttaaggtg |
137 |
Q |
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| T |
2871843 |
ttagacagttaacaatttactaagatgaagtgattgagttgttttctcaattggatcaatcactttaaatttctaaactcactcataaccctttaaggtg |
2871744 |
T |
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| Q |
138 |
gcgttaggacttttattaaacaaagtt-tcaaaaacaacttgagaatacggtaacaataattagtaatattatatgtatgcaaaagccaaagtttatata |
236 |
Q |
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| T |
2871743 |
gggttaagacttttgttaaacaaagttgccaaaaatgacttgtaaatacggtaacaataattagtaatattatatgtatgtaaaagccaaagtttatata |
2871644 |
T |
|
| Q |
237 |
gttaatctgatacttttaattataggatatttgatcctcttcattaatatcaacattgatgataataatgaaatttaacacggaatacactatcaaggac |
336 |
Q |
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| T |
2871643 |
cctaatcctatac-tttaactatagaatatttgatcctcttcatcaatatcaacattaatgataataatgcaaattaacacgaaatacattatcaaggac |
2871545 |
T |
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| Q |
337 |
at |
338 |
Q |
| |
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|| |
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| T |
2871544 |
at |
2871543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 180; Significance: 6e-97; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 59 - 329
Target Start/End: Complemental strand, 26907390 - 26907119
Alignment:
| Q |
59 |
aagatgaagtgattgagttgttttctcaatgggatcaatcactttaaattcctaaactcactcataaccctttaaggtggcgttaggacttttattaaac |
158 |
Q |
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| T |
26907390 |
aagatgaagtgattgaggtgttttctcaatgggatcaatcactttaaattcctaaagttactcataaccctttaaggtggggttaggagttttgttaaac |
26907291 |
T |
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| Q |
159 |
aaagtttca-aaaacaacttgagaatacggtaacaataattagtaatattatatgtatgcaaaagccaaagtttatatagttaatctgatacttttaatt |
257 |
Q |
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| T |
26907290 |
aaagttgccgaaaatgacttgtgaatacggtaacaataattagtaatattatatgtatgcaaaagccaaagtatatatagctaatcttctacttttaacc |
26907191 |
T |
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| Q |
258 |
ataggatatttgatcctcttcattaatatcaacattgatgataataatgaaatttaacacggaatacactat |
329 |
Q |
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| T |
26907190 |
ataggatatttgaccctcttcattaatatcaacattaatgataataatgcaatttaacacgaaatacactat |
26907119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 225 - 420
Target Start/End: Complemental strand, 28703936 - 28703742
Alignment:
| Q |
225 |
aaagtttatatagttaatctgatacttttaattataggatatttgatcctcttcattaatatcaacattgatgataataatgaaatttaacacggaatac |
324 |
Q |
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| T |
28703936 |
aaagtttatatagctaatcctatacttttaactataggatatttgatcctcttcattaatataaacattaatgataacaatgcaattttacacgaaatac |
28703837 |
T |
|
| Q |
325 |
actatcaaggacatgtcaagggtagatcaaatatttctgcaaacatcttatagaaaaacaatatatctgaagaggtaatttcggtcttaaagaggt |
420 |
Q |
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| T |
28703836 |
ac-atcaaggacatgtcaagggttaatcaaatatttctgcaaacatcttatagaaaaacaagatatctgaagaggtaatttcggtcttaaagaggt |
28703742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 62 - 236
Target Start/End: Complemental strand, 28704131 - 28703956
Alignment:
| Q |
62 |
atgaagtgattgagttgttttctcaatgggatcaatcactttaaattcctaaactcactcataaccctttaaggtggcgttaggacttttattaaacaaa |
161 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||| ||||| ||| |
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| T |
28704131 |
atgaagtgattgagttgttttctcaatgggatcaatcactttaaattcctaaacttacttagaaccctttaaggtggggttaggacttttgttaaagaaa |
28704032 |
T |
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| Q |
162 |
gtt-tcaaaaacaacttgagaatacggtaacaataattagtaatattatatgtatgcaaaagccaaagtttatata |
236 |
Q |
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||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28704031 |
gttgccaaaaatgacttgtgaatacggtaacaataattagtaatattatatgtatgcaaaagccaaaatttatata |
28703956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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