View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5623-Insertion-5 (Length: 408)

Name: NF5623-Insertion-5
Description: NF5623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5623-Insertion-5
NF5623-Insertion-5
[»] chr3 (7 HSPs)
chr3 (8-301)||(16347449-16347743)
chr3 (303-408)||(5554101-5554206)
chr3 (303-408)||(23460471-23460576)
chr3 (303-408)||(16346903-16347008)
chr3 (303-408)||(47418286-47418391)
chr3 (312-408)||(25531905-25532001)
chr3 (320-408)||(47566744-47566832)
[»] chr7 (8 HSPs)
chr7 (8-301)||(40999679-40999971)
chr7 (303-408)||(40998529-40998634)
chr7 (303-408)||(41000388-41000493)
chr7 (312-407)||(7842946-7843041)
chr7 (312-407)||(9595755-9595850)
chr7 (312-407)||(9646718-9646813)
chr7 (312-407)||(9647254-9647349)
chr7 (11-176)||(12367842-12368007)
[»] chr2 (6 HSPs)
chr2 (8-301)||(24807713-24808006)
chr2 (11-259)||(44794153-44794406)
chr2 (303-408)||(18535612-18535717)
chr2 (303-408)||(24806593-24806699)
chr2 (303-408)||(24808449-24808555)
chr2 (312-408)||(22300215-22300311)
[»] scaffold0139 (1 HSPs)
scaffold0139 (8-301)||(4805-5089)
[»] scaffold0146 (2 HSPs)
scaffold0146 (8-246)||(8016-8255)
scaffold0146 (303-349)||(27480-27526)
[»] scaffold0025 (1 HSPs)
scaffold0025 (303-408)||(55126-55231)
[»] chr8 (2 HSPs)
chr8 (303-408)||(17277985-17278090)
chr8 (312-408)||(8366376-8366472)
[»] scaffold0013 (1 HSPs)
scaffold0013 (303-408)||(241315-241420)
[»] chr4 (7 HSPs)
chr4 (303-407)||(9398929-9399033)
chr4 (312-407)||(15017962-15018057)
chr4 (312-407)||(15019602-15019697)
chr4 (312-404)||(9166926-9167018)
chr4 (312-408)||(39488469-39488565)
chr4 (312-408)||(13518279-13518375)
chr4 (11-167)||(25005503-25005659)
[»] scaffold0018 (1 HSPs)
scaffold0018 (303-408)||(393-499)
[»] chr1 (6 HSPs)
chr1 (312-408)||(20189116-20189212)
chr1 (312-408)||(20190749-20190845)
chr1 (312-407)||(36233575-36233670)
chr1 (312-408)||(24157373-24157468)
chr1 (303-363)||(31390245-31390305)
chr1 (303-408)||(20759365-20759470)
[»] chr5 (3 HSPs)
chr5 (312-407)||(244760-244855)
chr5 (313-407)||(29949854-29949948)
chr5 (313-407)||(29951492-29951586)
[»] scaffold0269 (1 HSPs)
scaffold0269 (322-408)||(1732-1818)
[»] scaffold0026 (1 HSPs)
scaffold0026 (322-408)||(86848-86934)


Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 16347743 - 16347449
Alignment:
Q  8 ggatctccatacctccttctttccttgatagtttgatcccaccacaacaatgcatattctttaaattcaagagctgcaacctgcactttttgaacattag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16347743 ggatctccatacctccttctttccttgatagtttgatcccaccacaacaatgcatattctttaaattcaagagctgcaacctgcactttttgaacattag 16347644  T
Q  108 agtaagttttatattgaaaaaattgttcaatctttgtttcccactctaaatatgcatccgggtctctttgccctcgaaaaaatggaactttgannnnnnn 207  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  16347643 agtaagttttacattgaaaaaattgttcaatctttgtttcccactctaaatatgcatccgggtctctttgccctcgaaaaaatggaactttgattttttt 16347544  T
Q  208 gtcactatatctttcca-ttttttcctagaatcatagagagattaaaatgaagnnnnnnnnntggtaacaatgaaaagggatttccaaatggaaa 301  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  16347543 gtcacaatatctttccatttttttcctagaatcatagagagattaaaatgaagagaaaaaaatggtaacaatgaaaagggatttccaaatggaaa 16347449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 303 - 408
Target Start/End: Original strand, 5554101 - 5554206
Alignment:
Q  303 tctttaaacttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataa 402  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  5554101 tctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttacacattgatttgtgaaggcttattatggctagacgttacaattccacaa 5554200  T
Q  403 acacca 408  Q
    ||||||    
T  5554201 acacca 5554206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 303 - 408
Target Start/End: Complemental strand, 23460576 - 23460471
Alignment:
Q  303 tctttaaacttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataa 402  Q
    |||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  23460576 tctttaaagttggtggttgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccacaa 23460477  T
Q  403 acacca 408  Q
    ||||||    
T  23460476 acacca 23460471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 303 - 408
Target Start/End: Complemental strand, 16347008 - 16346903
Alignment:
Q  303 tctttaaacttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataa 402  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||    
T  16347008 tctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaatgcttattatggctagacgttacatttccacaa 16346909  T
Q  403 acacca 408  Q
    ||||||    
T  16346908 acacca 16346903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 303 - 408
Target Start/End: Original strand, 47418286 - 47418391
Alignment:
Q  303 tctttaaacttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataa 402  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||    
T  47418286 tctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaatgcttattatggctagacgttacatttccacaa 47418385  T
Q  403 acacca 408  Q
    ||||||    
T  47418386 acacca 47418391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 312 - 408
Target Start/End: Complemental strand, 25532001 - 25531905
Alignment:
Q  312 ttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacca 408  Q
    ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  25532001 ttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacacca 25531905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 320 - 408
Target Start/End: Complemental strand, 47566832 - 47566744
Alignment:
Q  320 tgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacca 408  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||  |||||  ||||||||||| ||||||||    
T  47566832 tgatcaatgcttgagaaggttacatattcatttgcacattgatttgtgaaagcttattatttctagaaattacaattccacaaacacca 47566744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 40999679 - 40999971
Alignment:
Q  8 ggatctccatacctccttctttccttgatagtttgatcccaccacaacaatgcatattctttaaattcaagagctgcaacctgcactttttgaacattag 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40999679 ggatctccatacctccttctttccttgatagtttgatcccaccacaacaatgcatattctttaaattcaagagctgcaacctgcactttttgaacattag 40999778  T
Q  108 agtaagttttatattgaaaaaattgttcaatctttgtttcccactctaaatatgcatccgggtctctttgccctcgaaaaaatggaactttgannnnnnn 207  Q
    ||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  40999779 agtaagttttacattgaaaaactttttcaatctttgtttcccactctaaatatgcatccgggtctctttgccctcgaaaaaatggaactttgattttttt 40999878  T
Q  208 gtcactatatctttccattttttcctagaatcatagagagattaaaatgaagnnnnnnnnntggtaacaatgaaaagggatttccaaatggaaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||    
T  40999879 gtcactatatctttccattttttcctagaatcatagagagattaaaatgaag-aaaaaaaatggtaacaatgaaaagggatttccaaatggaaa 40999971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 303 - 408
Target Start/End: Original strand, 40998529 - 40998634
Alignment:
Q  303 tctttaaacttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataa 402  Q
    |||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40998529 tctttaaagttggtggctgatcaatgcatgaaaaggttacatattcatttgcacattgatttgtgaaggattattatggctagacgttacaattccataa 40998628  T
Q  403 acacca 408  Q
    ||||||    
T  40998629 acacca 40998634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 303 - 408
Target Start/End: Original strand, 41000388 - 41000493
Alignment:
Q  303 tctttaaacttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataa 402  Q
    |||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  41000388 tctttaaagttggtggctgatcaatgcatgaaaaggttacatattcatttgcacattgatttgtgaaggattattatggctagacgttacaattccataa 41000487  T
Q  403 acacca 408  Q
    ||||||    
T  41000488 acacca 41000493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 7843041 - 7842946
Alignment:
Q  312 ttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacc 407  Q
    ||||| ||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||    
T  7843041 ttggtggctaatcaatgcatgaagaggttacatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacacc 7842946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 9595755 - 9595850
Alignment:
Q  312 ttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacc 407  Q
    ||||| ||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| |||||||    
T  9595755 ttggtggctaatcaatgcatgaggtggttacatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacacc 9595850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 9646718 - 9646813
Alignment:
Q  312 ttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacc 407  Q
    ||||| ||| |||||||||||||  ||||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||| |||||||    
T  9646718 ttggtggctaatcaatgcatgaggtggttacatattcatttggacattgatttgtgaaggcttattatttctagacgttacaattccacaaacacc 9646813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 9647254 - 9647349
Alignment:
Q  312 ttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacc 407  Q
    ||||| ||| || |||||||||| ||||||||||||||||||||||||||||||| |||||| |||||  |||||||||||||||||| |||||||    
T  9647254 ttggtggctaataaatgcatgaggaggttacatattcatttgcacattgatttgtaaaggctgattatttctagacgttacaattccacaaacacc 9647349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 176
Target Start/End: Original strand, 12367842 - 12368007
Alignment:
Q  11 tctccatacctccttctttccttgatagtttgatcccaccacaacaatgcatattctttaaattcaagagctgcaacctgcactttttgaacattagagt 110  Q
    ||||||||||||||||| || |||| | ||||||| |||||||  |  ||||| || ||||||||||| ||||||||||||||||||||||  |||| ||    
T  12367842 tctccatacctccttctatctttgacaatttgatctcaccacactagggcatactccttaaattcaagggctgcaacctgcactttttgaaggttagtgt 12367941  T
Q  111 aagttttatattgaaaaaattgttcaatctttgtttcccactctaaatatgcatccgggtctcttt 176  Q
    |||| | | | | ||||| ||||||||| || ||||||| ||| ||||| |||  |||||| ||||    
T  12367942 aagtgtgacaattaaaaatttgttcaattttagtttccccctccaaataagcagtcgggtcacttt 12368007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 206; Significance: 1e-112; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 301
Target Start/End: Original strand, 24807713 - 24808006
Alignment:
Q  8 ggatctccatacctccttctttccttgatagtttgatcccaccacaacaatgcatattctttaaattcaagagctgcaacctgcactttttgaacattag 107  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24807713 ggatctccatacctccttctttccttgatagtttgatcccactataacaatgcatactctttaaattcaagagctgcaacctgcactttttgaacattag 24807812  T
Q  108 agtaagttttatattgaaaaaattgttcaatctttgtttcccactctaaatatgcatccgggtctctttgccctcgaaaaaatggaactttgannnnnnn 207  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  24807813 agtaagttttacattgaaaaaattgttcaatctttgtctcccactctaaatatgcatccgggtctctttgccctcgaaaaaatggaactttgattttttt 24807912  T
Q  208 gtcactatatctttccattttttcctagaatcatagagagattaaaatga--agnnnnnnnnntggtaacaatgaaaagggatttccaaatggaaa 301  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||  ||         |||||||||||||||||||||||||||||||||    
T  24807913 gtcactatatctttccattttttcctagaatc--agagagattaaaatgaagagagaaaaaaatggtaacaatgaaaagggatttccaaatggaaa 24808006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 44794153 - 44794406
Alignment:
Q  11 tctccatacctccttctttccttgatagtttgatcccaccacaacaatgcatattctttaaattcaagagctgcaacctgcactttttgaacattagagt 110  Q
    ||||||||||||||||||||||| || || |||||||||||||  |||||||| || ||||||||||||||||||||||||||||||||||||||||||     
T  44794153 tctccatacctccttctttccttaatggtctgatcccaccacactaatgcataatccttaaattcaagagctgcaacctgcactttttgaacattagaga 44794252  T
Q  111 aagttttatattgaaaaaattgttcaatctttgtttcccactctaaatatgcatccgggtctctttgccctcgaaaaaatggaactttgannnnnnngtc 210  Q
    |||| ||  |||||||||||||||| || ||  |||||||||||| ||||||||| |  |||||||||||||||||||||||||||||||       |||    
T  44794253 aagtgttgcattgaaaaaattgttcgattttgttttcccactctagatatgcatctgaatctctttgccctcgaaaaaatggaactttgatttttttgtc 44794352  T
Q  211 actatatctttccattttttc----ctag-aatcatagagagattaaaatgaag 259  Q
    ||||||||||||||||||||     |||| ||||| ||||||||||||||||||    
T  44794353 actatatctttccatttttttttttctagcaatcaaagagagattaaaatgaag 44794406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 303 - 408
Target Start/End: Original strand, 18535612 - 18535717
Alignment:
Q  303 tctttaaacttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataa 402  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||    
T  18535612 tctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaatgcttattatggctagacgttacatttccacaa 18535711  T
Q  403 acacca 408  Q
    ||||||    
T  18535712 acacca 18535717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 303 - 408
Target Start/End: Original strand, 24806593 - 24806699
Alignment:
Q  303 tctttaaacttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatgg-ctagacgttacaattccata 401  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |    
T  24806593 tctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttttgaaggcttattatggcctagacgttacaattccaca 24806692  T
Q  402 aacacca 408  Q
    |||||||    
T  24806693 aacacca 24806699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 303 - 408
Target Start/End: Original strand, 24808449 - 24808555
Alignment:
Q  303 tctttaaacttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatgg-ctagacgttacaattccata 401  Q
    |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||| |    
T  24808449 tctttaaagttggtggcggatcaatgcatgagaaggttacatattcatttgcacattgatttttgaaggcttattatggcctagccgttacaattccaca 24808548  T
Q  402 aacacca 408  Q
    |||||||    
T  24808549 aacacca 24808555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 312 - 408
Target Start/End: Original strand, 22300215 - 22300311
Alignment:
Q  312 ttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacca 408  Q
    ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  22300215 ttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacacca 22300311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 161; Significance: 1e-85; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 8 - 301
Target Start/End: Complemental strand, 5089 - 4805
Alignment:
Q  8 ggatctccatacctccttctttccttgatagtttgatcccaccacaacaatgcatattctttaaattcaagagctgcaacctgcactttttgaacattag 107  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |    
T  5089 ggatctccatacctccttctttccttgatagtttgatcccaacacaacaatgcatattctttaaattcaagagatgcaacctgcactttttgaacattcg 4990  T
Q  108 agtaagttttatattgaaaaaattgttcaatctttgtttcccactctaaatatgcatccgggtctctttgccctcgaaaaaatggaactttgannnnnnn 207  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||       ||||||||||||||||||           
T  4989 agtaagttttacattgaaaaaattgttcaatttttgtttcccactctaaatatgcaaccgggtctctt-------gaaaaaatggaactttgatattttt 4897  T
Q  208 gtcactatatctttcca-ttttttcctagaatcatagagagattaaaatgaagnnnnnnnnntggtaacaatgaaaagggatttccaaatggaaa 301  Q
    ||||||||||||||||| |||||| ||||||||||  ||||||||| ||||||         ||||||||||| |||||||||||||||||||||    
T  4896 gtcactatatctttccattttttttctagaatcat--agagattaatatgaag-aaaagaaatggtaacaatggaaagggatttccaaatggaaa 4805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 8 - 246
Target Start/End: Complemental strand, 8255 - 8016
Alignment:
Q  8 ggatctccatacctccttctttccttgatagtttgatcccaccacaacaatgcatattctttaaattcaagagctgcaacctgcactttttgaacattag 107  Q
    |||||||| || ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  8255 ggatctccgtatctccttctttccttgatagtttgatgccaccacaccaatgcataatctttaaattgaagagctgcaacttgcactttttgaacattag 8156  T
Q  108 agtaagttttatattgaaaaaattgttcaatctttgtttcccactctaaatatgcatccgggtctctttgccctcgaaaaaatggaactttgannnnnnn 207  Q
    ||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||           
T  8155 agtaagttttacattgtaaaaattgttcaatttttgtttcccactctaaatatgcatccgggtatctttacccttgaaaaaatggaactttgattttttt 8056  T
Q  208 gtcactatatctttcca-ttttttcctagaatcatagaga 246  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  8055 gtcactatatctttccattttttttctagaatcatagaga 8016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 303 - 349
Target Start/End: Complemental strand, 27526 - 27480
Alignment:
Q  303 tctttaaacttggtagctgatcaatgcatgagaaggttacatattca 349  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||    
T  27526 tctttaaagttggtggctgatcaatgcatgagaaggttacatattca 27480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 94; Significance: 9e-46; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 303 - 408
Target Start/End: Complemental strand, 55231 - 55126
Alignment:
Q  303 tctttaaacttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataa 402  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  55231 tctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccacaa 55132  T
Q  403 acacca 408  Q
    ||||||    
T  55131 acacca 55126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 303 - 408
Target Start/End: Original strand, 17277985 - 17278090
Alignment:
Q  303 tctttaaacttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataa 402  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||    
T  17277985 tctttaaagttggtggctgatcaatgcatgagaaggttacatattcattttcacattgatttgtgaaggcttattatgtctagacgttacaattccacaa 17278084  T
Q  403 acacca 408  Q
    ||||||    
T  17278085 acacca 17278090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 312 - 408
Target Start/End: Complemental strand, 8366472 - 8366376
Alignment:
Q  312 ttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacca 408  Q
    ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  8366472 ttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacacca 8366376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 303 - 408
Target Start/End: Complemental strand, 241420 - 241315
Alignment:
Q  303 tctttaaacttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataa 402  Q
    |||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||    
T  241420 tctttaaagttggtggctgatcaatgcatgagaaggttatatattcatttgcacattgatttttgaaggcttattatgtctagacgttacaattccacaa 241321  T
Q  403 acacca 408  Q
    ||||||    
T  241320 acacca 241315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 303 - 407
Target Start/End: Original strand, 9398929 - 9399033
Alignment:
Q  303 tctttaaacttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataa 402  Q
    |||||||| || || |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||    
T  9398929 tctttaaagttagtggctgatcaatgcatgagaaggttacatattcatttgcacatttatttgtgaaggcttattatgtctagacgttacaattccacaa 9399028  T
Q  403 acacc 407  Q
    |||||    
T  9399029 acacc 9399033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 15017962 - 15018057
Alignment:
Q  312 ttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacc 407  Q
    ||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||    
T  15017962 ttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggctaattatttctagacgttacaattccacaaacacc 15018057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 15019602 - 15019697
Alignment:
Q  312 ttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacc 407  Q
    ||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||    
T  15019602 ttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggctaattatttctagacgttacaattccacaaacacc 15019697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 312 - 404
Target Start/End: Complemental strand, 9167018 - 9166926
Alignment:
Q  312 ttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaac 404  Q
    ||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| ||||    
T  9167018 ttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggctaattatttctagacgttacaattccacaaac 9166926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 312 - 408
Target Start/End: Original strand, 39488469 - 39488565
Alignment:
Q  312 ttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacca 408  Q
    ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||| || ||||||||    
T  39488469 ttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaagacttattatttctagacgttacaatttcacaaacacca 39488565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 312 - 408
Target Start/End: Original strand, 13518279 - 13518375
Alignment:
Q  312 ttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacca 408  Q
    ||||| ||| || |||||||||| ||||||||||||||||||||||||||||||| |||||| |||||  |||||||||||||||||| ||||||||    
T  13518279 ttggtggctaataaatgcatgaggaggttacatattcatttgcacattgatttgtaaaggctaattatttctagacgttacaattccacaaacacca 13518375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 167
Target Start/End: Complemental strand, 25005659 - 25005503
Alignment:
Q  11 tctccatacctccttctttccttgatagtttgatcccaccacaacaatgcatattctttaaattcaagagctgcaacctgcactttttgaacattagagt 110  Q
    ||||||||||||||||| |  |||||| ||||||| |||||||  || ||||| || ||||||||||| | |||||| |||||||||||||  |||| ||    
T  25005659 tctccatacctccttctatatttgataatttgatctcaccacactaaggcatactccttaaattcaagggatgcaacatgcactttttgaaagttagtgt 25005560  T
Q  111 aagttttatattgaaaaaattgttcaatctttgtttcccactctaaatatgcatccg 167  Q
    |||| | | | | ||||| ||||||||| || || |||||||  ||||| |||||||    
T  25005559 aagtgtgaaagttaaaaatttgttcaattttagtctcccacttcaaataggcatccg 25005503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 303 - 408
Target Start/End: Original strand, 393 - 499
Alignment:
Q  303 tctttaaacttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatgg-ctagacgttacaattccata 401  Q
    |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||| |    
T  393 tctttaaagttggtggcggatcaatgcatgagaaggttacatattcatttgcacattgatttttgaaggcttattatggcctagccgttacaattccaca 492  T
Q  402 aacacca 408  Q
    |||||||    
T  493 aacacca 499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 69; Significance: 8e-31; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 312 - 408
Target Start/End: Original strand, 20189116 - 20189212
Alignment:
Q  312 ttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacca 408  Q
    ||||| ||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  20189116 ttggtggctaatcaatgcatgaggaggttatatattcatttgcacattgatttgtgaaggcttattatttctagacgttacaattccacaaacacca 20189212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 312 - 408
Target Start/End: Original strand, 20190749 - 20190845
Alignment:
Q  312 ttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacca 408  Q
    ||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||| ||||||||    
T  20190749 ttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggcttattatttcaagacgttacaattccacaaacacca 20190845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 312 - 407
Target Start/End: Complemental strand, 36233670 - 36233575
Alignment:
Q  312 ttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacc 407  Q
    ||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||    
T  36233670 ttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggctaattatttctagacgttacaattccacaaacacc 36233575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 312 - 408
Target Start/End: Original strand, 24157373 - 24157468
Alignment:
Q  312 ttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacca 408  Q
    ||||| ||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||| ||||||||    
T  24157373 ttggtggctaatcaatgcatgaggaggttacatattcatttgca-attgatttgtgaaggcttattatttctagacgttacaattccacaaacacca 24157468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 303 - 363
Target Start/End: Complemental strand, 31390305 - 31390245
Alignment:
Q  303 tctttaaacttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatt 363  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31390305 tctttaaagttggtggctgatcaatgcatgagaaggttacatattcatttgcacattgatt 31390245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 303 - 408
Target Start/End: Complemental strand, 20759470 - 20759365
Alignment:
Q  303 tctttaaacttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataa 402  Q
    ||||| || ||||| ||||||||||||||||| | ||||||||||||||||||||||||||  | ||||||| ||||   |||| |||||||||||| ||    
T  20759470 tctttgaagttggtcgctgatcaatgcatgaggatgttacatattcatttgcacattgattaatcaaggcttgttatttatagatgttacaattccacaa 20759371  T
Q  403 acacca 408  Q
    ||||||    
T  20759370 acacca 20759365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 312 - 407
Target Start/End: Original strand, 244760 - 244855
Alignment:
Q  312 ttggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacc 407  Q
    ||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||    
T  244760 ttggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggctaattatttctagacgttacaattccacaaacacc 244855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 313 - 407
Target Start/End: Complemental strand, 29949948 - 29949854
Alignment:
Q  313 tggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacc 407  Q
    |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||    
T  29949948 tggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggctaattatttctagacgttacaattccacaaacacc 29949854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 313 - 407
Target Start/End: Complemental strand, 29951586 - 29951492
Alignment:
Q  313 tggtagctgatcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacc 407  Q
    |||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||||||| |||||||    
T  29951586 tggtggctaatcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaggctaattatttctagacgttacaattccacaaacacc 29951492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0269 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0269
Description:

Target: scaffold0269; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 322 - 408
Target Start/End: Original strand, 1732 - 1818
Alignment:
Q  322 atcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacca 408  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||||||| ||||||||    
T  1732 atcaatgcatgaggaggttacatattcatttgcacattgatttgtgaaagcttattatttctagacgttacaattccacaaacacca 1818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 322 - 408
Target Start/End: Complemental strand, 86934 - 86848
Alignment:
Q  322 atcaatgcatgagaaggttacatattcatttgcacattgatttgtgaaggcttattatggctagacgttacaattccataaacacca 408  Q
    ||||||| ||||| |||||||||||| |||| ||||||||||||||||||||||||||   ||||||||||||||||| ||||||||    
T  86934 atcaatggatgaggaggttacatattgattttcacattgatttgtgaaggcttattatttatagacgttacaattccacaaacacca 86848  T

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