View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5623-Insertion-6 (Length: 273)
Name: NF5623-Insertion-6
Description: NF5623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5623-Insertion-6 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 8 - 273
Target Start/End: Complemental strand, 32590703 - 32590440
Alignment:
| Q |
8 |
gatatttcattttatatttcattctaatttcttttttgaaacataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaac |
107 |
Q |
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| T |
32590703 |
gatatttcattttctattttattatacttgcttttttgaaacataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaac |
32590604 |
T |
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| Q |
108 |
aacaggagatattaaagataattggcataggtcaaattaatatgataactcacattccaacattatacaatgtcactttttgcgtaataattgagtcatg |
207 |
Q |
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| T |
32590603 |
aacaggagatattaaagataattggcataggtaaaattaatatgataattcacattctcacattatacgatgtctctttttgcataataattgaatcatg |
32590504 |
T |
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| Q |
208 |
aaagaaaagaaaaaatcaattattttcttcattttcctatattatgaccaactaactttattcctc |
273 |
Q |
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| T |
32590503 |
aaagaaaag--aaaaccaattattttcttcattttcctatattatgaccaactaactttattcctc |
32590440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 32601174 - 32601022
Alignment:
| Q |
8 |
gatatttcattttatatttcattctaatttcttttttgaaacataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaac |
107 |
Q |
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| T |
32601174 |
gatatttcattttatatttcattataatttcttttttgaaacataggggatgggaagatcctgctacatgggccaaaagtgtgggaaatagttggagaac |
32601075 |
T |
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| Q |
108 |
aacaggagatattaaagataattggcataggtcaaattaatatgataactcac |
160 |
Q |
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| T |
32601074 |
aacaggagatattgaagataactggaataggtaaaattaatatgataactcac |
32601022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 217 - 271
Target Start/End: Complemental strand, 32600946 - 32600892
Alignment:
| Q |
217 |
aaaaaatcaattattttcttcattttcctatattatgaccaactaactttattcc |
271 |
Q |
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| T |
32600946 |
aaaaaatcaattattttcttcattttcttatattatgaccaactaactttattcc |
32600892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 24883380 - 24883434
Alignment:
| Q |
85 |
agtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggt |
139 |
Q |
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| T |
24883380 |
agtgtgggaaatagttggagaacaacatcagatatcgaagataaatgggataggt |
24883434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 139
Target Start/End: Complemental strand, 34594183 - 34594091
Alignment:
| Q |
47 |
aacataggggaaaggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattggcataggt |
139 |
Q |
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| T |
34594183 |
aacataggggatgggaagacccagcaacatgggcaaaaagtgtgggaaatagttggagaacaacaggtgatattgaagataattggaataggt |
34594091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 132
Target Start/End: Complemental strand, 34578470 - 34578398
Alignment:
| Q |
60 |
ggaagatccagcaacatgggccaaaagtgtgggaaatagttggagaacaacaggagatattaaagataattgg |
132 |
Q |
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| T |
34578470 |
ggaagatcctgcaacgtgggccaaaagtgtgggaaatagttggagaaccacgggtgatatagaagataattgg |
34578398 |
T |
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