View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5623_high_2 (Length: 454)
Name: NF5623_high_2
Description: NF5623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5623_high_2 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 44 - 447
Target Start/End: Complemental strand, 11968833 - 11968424
Alignment:
| Q |
44 |
aaaaagatgctagccacgtcgaattatggttatttatattcatttgttcctatcttttaggtaataa---ctttgactgactagagtagttagtggttac |
140 |
Q |
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|||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |
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| T |
11968833 |
aaaaagatgccagccacgttgaatgatggttatttatattcatttgttcctatcttttaggtaataataactttgaccgactagagtagttagtggttac |
11968734 |
T |
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| Q |
141 |
ggtttctccacaattcacccacgtt-aaaatttgatggagttggagcaaagttctactaattagctatttcattctatcacatgtaatatatcctagttg |
239 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
11968733 |
ggtttctccacaattcacccacgtttaaaatttgatggagttggagcaaagttctactaattagctatttcattctatcacatgtaaaatctcctagttg |
11968634 |
T |
|
| Q |
240 |
tttatttctctgactctcaaaacggtgcccttgccagtctctcgctatcatgtgtacgatatactgcctctcttatatctatcacacatcattccctatc |
339 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
11968633 |
tttatttctctgactctcaaaacggtgtccttgccggtctctcactatcatgtgtacgatatactgcctctcttatatctatcacacatcattccttatc |
11968534 |
T |
|
| Q |
340 |
acaatgttctcttattattttccatagcctttg--agaattcatctccaacattccattaattcacatgttgtatacaaataatttccccatcgatcaat |
437 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
11968533 |
acaatgttctcttattattttccatagcctttgtaagaattcatctccaacattccattgatttacatgttgtatacaaataatttccccatcgatcaat |
11968434 |
T |
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| Q |
438 |
ccctatgcta |
447 |
Q |
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|||||||||| |
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| T |
11968433 |
ccctatgcta |
11968424 |
T |
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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 336 - 425
Target Start/End: Original strand, 40458482 - 40458571
Alignment:
| Q |
336 |
tatcacaatgttctcttattattttccatagcctttgagaattcatctccaacattccattaattcacatgttgtatacaaataatttcc |
425 |
Q |
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| T |
40458482 |
tatcacaatgttctcttattatttctcatagtcttcgagcatacatcttcatcattccattggttcacatgttgtatacaaatattttcc |
40458571 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 336 - 425
Target Start/End: Complemental strand, 43408430 - 43408341
Alignment:
| Q |
336 |
tatcacaatgttctcttattattttccatagcctttgagaattcatctccaacattccattaattcacatgttgtatacaaataatttcc |
425 |
Q |
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| T |
43408430 |
tatcacaatgttctcttattatttctcatagtcttcgagcatacatcttcatcattccattggttcacatgttgtatacaaatattttcc |
43408341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 36387445 - 36387390
Alignment:
| Q |
81 |
attcatttgttcctatcttttaggtaataactttgactgactagagtagttagtgg |
136 |
Q |
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| T |
36387445 |
attcatttggtcctatcttttaggtcataactttgactaattagagtagttagtgg |
36387390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 336 - 425
Target Start/End: Complemental strand, 37667821 - 37667732
Alignment:
| Q |
336 |
tatcacaatgttctcttattattttccatagcctttgagaattcatctccaacattccattaattcacatgttgtatacaaataatttcc |
425 |
Q |
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||||||||||||||| |||||||||| |||| ||| ||| || ||||| || ||||||||| ||||||||||||| | ||||| ||||| |
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| T |
37667821 |
tatcacaatgttctcctattattttctatagtcttcgagcatacatcttcatcattccattggttcacatgttgtagaaaaatattttcc |
37667732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 419
Target Start/End: Original strand, 22403321 - 22403404
Alignment:
| Q |
336 |
tatcacaatgttctcttattattttccatagcctttgagaattcatctccaacattccattaattcacatgttgtatacaaata |
419 |
Q |
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| T |
22403321 |
tatcaaaaagttctcttattatttcttatggtctttgagcatacatctccaacattccattgattcacatgttgtatacaaata |
22403404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 419
Target Start/End: Original strand, 194411 - 194501
Alignment:
| Q |
327 |
atcattccctatcacaatgttctcttattattttccatagcctttgagaattcatctccaacattccattaattcacatgttgtatacaaata |
419 |
Q |
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| T |
194411 |
atcatcccatatcacaatgctctcttattatttccca--gtctttgagcatacatctccaacgttccattgattcatatgttgtatacaaata |
194501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 136
Target Start/End: Complemental strand, 243789 - 243734
Alignment:
| Q |
81 |
attcatttgttcctatcttttaggtaataactttgactgactagagtagttagtgg |
136 |
Q |
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||||||||| ||||||||||||||| |||| |||||| | ||||||||||||||| |
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| T |
243789 |
attcatttggtcctatcttttaggtcataatcttgactaattagagtagttagtgg |
243734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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