View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5623_low_12 (Length: 205)
Name: NF5623_low_12
Description: NF5623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5623_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 143; Significance: 3e-75; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 46466329 - 46466503
Alignment:
| Q |
20 |
gagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgttgggtttgattgctttggctgttacagaatatgtta |
119 |
Q |
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| T |
46466329 |
gagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgttgggtttgattgctctggctgttacagaatatgtta |
46466428 |
T |
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| Q |
120 |
agggtactgcccttgtttaa-tagagttttacagggacacgattaaagtctataagatttgtggttagaagccaa |
193 |
Q |
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| T |
46466429 |
agggtactgcccttgtgtaagtagagttttatagggacatgattaaagtctatagggtttgtggttagaagccaa |
46466503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 46471534 - 46471708
Alignment:
| Q |
20 |
gagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgttgggtttgattgctttggctgttacagaatatgtta |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46471534 |
gagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgttgggtttgattgctctggctgttacagaatatgtta |
46471633 |
T |
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| Q |
120 |
agggtactgcccttgtttaa-tagagttttacagggacacgattaaagtctataagatttgtggttagaagccaa |
193 |
Q |
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| T |
46471634 |
agggtactgcccttgtgtaagtagagttttatagggacatgattaaagtctatagggtttgtggttagaagccaa |
46471708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 204
Target Start/End: Complemental strand, 46344617 - 46344433
Alignment:
| Q |
20 |
gagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgttgggtttgattgctttggctgttacagaatatgtta |
119 |
Q |
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| T |
46344617 |
gagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcctttacagagtatgtta |
46344518 |
T |
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| Q |
120 |
agggtactgcccttgtttaatagagttttacagggacacgattaaagtctataagatttgtggttagaagccaatatatgaaact |
204 |
Q |
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| T |
46344517 |
agggtacctcccttgtgtaatagatttctttagtgacactgttaaggcttatagaatttgtggttagcagtcaatatatgaaact |
46344433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 46451939 - 46452083
Alignment:
| Q |
20 |
gagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgttgggtttgattgctttggctgttacagaatatgtta |
119 |
Q |
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||||| |||||||||||| | ||||| ||| ||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
46451939 |
gagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcttttacagagtatgtta |
46452038 |
T |
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| Q |
120 |
agggtactgcccttgtttaatagagttttacagggacacgattaa |
164 |
Q |
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||||||| ||||||| ||||||| || || ||| | |||||||| |
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| T |
46452039 |
agggtacctcccttgtgtaatagatttctataggaagacgattaa |
46452083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 46462907 - 46463030
Alignment:
| Q |
20 |
gagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgttgggtttgattgctttggctgttacagaatatgtta |
119 |
Q |
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||||| |||||||||||| | ||||| ||| ||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
46462907 |
gagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtttgattgctttggcctttacagagtatgtta |
46463006 |
T |
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| Q |
120 |
agggtactgcccttgtttaataga |
143 |
Q |
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| T |
46463007 |
agggtacctcccttgtgtaataga |
46463030 |
T |
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