View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5623_low_3 (Length: 406)
Name: NF5623_low_3
Description: NF5623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5623_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 232 - 389
Target Start/End: Original strand, 47179557 - 47179715
Alignment:
| Q |
232 |
caagacataaaacaaccctcgacgagccttaataaatccttaaaaataactttgaagttaaatgt-gcaattatttcaccaaataataataataatcaac |
330 |
Q |
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| T |
47179557 |
caagacataaaacaaccctcgacgagccttaataaatccttaaaaataactttgaagttaaatgttgcaattatttcaccaaataataataaaaatcaac |
47179656 |
T |
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| Q |
331 |
aagtgcaagctacataaggtcccgtttaagtgccttggcctgtcgattaaggataatct |
389 |
Q |
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| T |
47179657 |
aagtgcaagctacataaggtcccgtttaagtgccttggcctgtcgattaaggataatct |
47179715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 9 - 171
Target Start/End: Original strand, 47179345 - 47179496
Alignment:
| Q |
9 |
acatcatcatcaaagatcatcaaccactactccaaccaccattctaacaaacaacaaacaaacacacggaccaccacccgataaccactcctacaacctc |
108 |
Q |
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| T |
47179345 |
acatcatcatcaaagatcatcaaccactactccaaccaccattctaaca-----------aacacacatatcaccacccgataaccactcctaccacctc |
47179433 |
T |
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| Q |
109 |
taaccatcattgttcaccacttcatccacctctgatcatcagctagaccaccactaaatctgg |
171 |
Q |
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| T |
47179434 |
taaccatcattgttcaccacttcatccacctctgatcatcagctagaccaccactaaatctgg |
47179496 |
T |
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