View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5623_low_7 (Length: 273)
Name: NF5623_low_7
Description: NF5623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5623_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 33550728 - 33550996
Alignment:
| Q |
1 |
acttcatgtcgaaggtctagcgtccggtgtccgacacatgtgattacatagaattacttccannnnnnncaaattttgacctgtatctacatgtcaatgt |
100 |
Q |
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| T |
33550728 |
acttcatgtcgaaggtctagcgtccggtgtccgacacatgtgattacatagaattacttccattttttttaaatttttacctgtatcgacgtgtcaatgt |
33550827 |
T |
|
| Q |
101 |
ttgtgtcagtgcttcatagaaagcatgcatatgtggtaataaatcccatcacttataagcaagattttcattcctaaagtatgaatttgatctggttcca |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33550828 |
ctgtgtcagtgcttcatagaaagcatgcataagtggtaataaatcccatcacttataagcaagattttcatgcctaaagtatgaatttgatctggttcca |
33550927 |
T |
|
| Q |
201 |
ggacacaggttacctcacagaatgcagtgcaactaggaaaaaacaaacccctatgaatattcttcgaca |
269 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
33550928 |
ggacacaggttacctcacagaatgcagtgcaactaggaaaaaacaaacccctatgaataatgttcgaca |
33550996 |
T |
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