View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5623_low_8 (Length: 263)
Name: NF5623_low_8
Description: NF5623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5623_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 33550254 - 33550416
Alignment:
| Q |
17 |
acttatcatatattaattgtgttttactgtttttatgttatatgccagctttcctgataaggaaacagtgaaggatgattgttcagatagcgttgagatt |
116 |
Q |
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| T |
33550254 |
acttatcatatattaattgagttttactgtttttatgttatatggcagctttcctgataaggaaacagtgaaggaggattgttcagatagcgttgagatt |
33550353 |
T |
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| Q |
117 |
tcagatcaaacaaagctggtataatatatcattcctctatttcatctaaaagttgtcataacc |
179 |
Q |
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| T |
33550354 |
tcagatcaaacaaagctggtataatatatcattcctctatttcatccaaaagttgtcataacc |
33550416 |
T |
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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 33550454 - 33550500
Alignment:
| Q |
217 |
aaattgggggaatttgaaggtacaattcttataaatacattgagttt |
263 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33550454 |
aaattgggggaatttgaaggtacaattcttctaaatacattgagttt |
33550500 |
T |
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