View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5624-Insertion-2 (Length: 1045)
Name: NF5624-Insertion-2
Description: NF5624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5624-Insertion-2 |
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Alignment Details
Target: chr5 (Bit Score: 642; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 182 - 979
Target Start/End: Original strand, 38795730 - 38796522
Alignment:
| Q |
182 |
gtgtaagtgtttcataagttcttaatacttttggagatgcttatatttagggccannnnnnnncaaaaggaacttatatttaaggacaaagatagtaaat |
281 |
Q |
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| T |
38795730 |
gtgtaagtgtttcataagttcttaatacttttggagatgcttatatttagggccattttttttcaaaaggaacttatatttaaggacaaagatagtaaat |
38795829 |
T |
|
| Q |
282 |
gtttatgtgaaagaagcactaaggccaacttaagcaaaccaatgtgagatctgttaaatgtcttgaagacttttgtcatttgtgtgaaaagtgagtgatt |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38795830 |
gtttatgtgaaagaagcactaaggccaacttaagcaaaccaatgtgagatctgttaaatgtcttgaatacttttgtcatttgtgtgaaaagtgagtgatt |
38795929 |
T |
|
| Q |
382 |
ttcttaattgaagttatgtggtatagtgaagttgggttatagaacctaaggcggcttgcaccatcggtgatgctctaacacctattcagttgttaactgc |
481 |
Q |
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| T |
38795930 |
ttcttatttgaagttatgtggtatagtgaagttgggttatagaacctaaggcggcttgcaccattggtgatgctctaacatctattcagttgttaactgc |
38796029 |
T |
|
| Q |
482 |
tcaatgtctagatgtaaccacttctgaaattaaatcaccttagtgttgtcacatgttgtatctatgaagtttaannnnnnnnacgttccatcatgatgtc |
581 |
Q |
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| T |
38796030 |
tcaatgtctagatgtaaccacttctgaaattaaatcaccttagtgttgtcacatg-----------aagtttaattttttttacgttccatcattatgtc |
38796118 |
T |
|
| Q |
582 |
aatttgacatgatccatcatcgtcgtcgtcagattttgacagactatgcatctttttgtttaataacaggaggcattgatcctcatacccatcttgagat |
681 |
Q |
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| T |
38796119 |
aatttgacatgatccatcatcgtcgtcgtcagattttgacagactgtgcatctttttgtttaataacaggaggcattgatcctcatacccatcttgagat |
38796218 |
T |
|
| Q |
682 |
ggagtttatgaacactgtggcggtggatgacttcttcagtggtcaggccgcggcattggctggtggtacaacaatgcacattgactttgttataccaact |
781 |
Q |
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| T |
38796219 |
ggagtttatgaacactgtggcggtggatgacttcttcagtggtcaggccgcggcattggctggtggtacaacaatgcacattgactttgttataccaact |
38796318 |
T |
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| Q |
782 |
aatgggagtttaaccgccggttttgaagcctatg-aaagaaggcaaagaaatcttgcatggactatggtttccatatggctattaccaaat-ggatgaaa |
879 |
Q |
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| T |
38796319 |
aatgggagtttaaccgctggttttgaagcctatgaaaagaaggcaaagaaatcttgcatggactatggtttccatatggctattaccaaatgggatgaaa |
38796418 |
T |
|
| Q |
880 |
ctgtttcaagagaaatggagctcatggtcaaggagaaaggttataatttattt-ctattttggatttgtatactct-gttaa-tatgaggc-ataaccct |
975 |
Q |
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| T |
38796419 |
ctgtttcaagagaaatggagctcatggtcaaggagaaaggttataatttatttcctattttggatttgtatactctggttaattatgaggcaataaccct |
38796518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 710 - 920
Target Start/End: Original strand, 38771260 - 38771472
Alignment:
| Q |
710 |
gacttcttcagtggtcaggccgcggcattggctggtggtacaacaatgcacattgactttgttataccaactaatgggagtttaaccgccggttttgaag |
809 |
Q |
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| T |
38771260 |
gacttcttcagtggtcagtctgcagcattagctggtggaacaacgatgcacattgacttcgttatgccaattaatgggaatttaactgctggttttgaag |
38771359 |
T |
|
| Q |
810 |
cctatg-aaagaaggcaaagaaatcttgcatggactatggtttccatatggctattaccaaat-ggatgaaactgtttcaagagaaatggagctcatggt |
907 |
Q |
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| T |
38771360 |
cctatgaaaagaaggcaaagaattcttgcatggattatggcttccatgtggcagttaccaaatgggatgaatctgtttcaacagatatggagatcatggt |
38771459 |
T |
|
| Q |
908 |
caaggagaaaggt |
920 |
Q |
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| T |
38771460 |
taaggagaaaggt |
38771472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 87; E-Value: 4e-41
Query Start/End: Original strand, 6 - 96
Target Start/End: Original strand, 38795603 - 38795693
Alignment:
| Q |
6 |
catcattgttgctgttaatccaactatcgcggttggagatgatgtatatgtcattgatgcaactggcaagtttgttatgccaggttagacc |
96 |
Q |
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| T |
38795603 |
catcattgttgctgttaatccaactatcgcggttggagatgatgtatatgtcattgatgccactggcaagtttgttatgccaggttagacc |
38795693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 38771029 - 38771085
Alignment:
| Q |
36 |
ggttggagatgatgtatatgtcattgatgcaactggcaagtttgttatgccaggtta |
92 |
Q |
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| T |
38771029 |
ggttggagatgatgtgtatgtgatagatgccaccggcaagtttgtcatgccaggtta |
38771085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 652 - 695
Target Start/End: Complemental strand, 6351857 - 6351814
Alignment:
| Q |
652 |
aggcattgatcctcatacccatcttgagatggagtttatgaaca |
695 |
Q |
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| T |
6351857 |
aggcattgatcctcatacccatctagagatggagtttatgaaca |
6351814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 6351919 - 6351859
Alignment:
| Q |
28 |
actatcgcggttggagatgatgtatatgtcattgatgcaactggcaagtttgttatgccag |
88 |
Q |
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|||||| ||||||||||||| |||| ||||| ||||| |||||||||||||||||||||| |
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| T |
6351919 |
actatcacggttggagatgacatataggtcatagatgccactggcaagtttgttatgccag |
6351859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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