View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5624-Insertion-4 (Length: 322)
Name: NF5624-Insertion-4
Description: NF5624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5624-Insertion-4 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 322
Target Start/End: Complemental strand, 52766845 - 52766531
Alignment:
| Q |
8 |
taagggtgagttcattggacggtccagatcatgagcaatgcgcgtatcaaacggctgtgaacataggagggcatgttttcaaaggaattctctatgatca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52766845 |
taagggtgagttcattggacggtccagatcatgagcaatgcgcgtatcaaacggctgtgaacataggagggcatgttttcaaaggaattctctatgatca |
52766746 |
T |
|
| Q |
108 |
aggtcctccaaatctttacaccagtattgcacctattgaaggttcttctggtggaggtcatcatcaacctcaacaacttgatttcatggctgcaacagca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52766745 |
aggtcctccaaatctttacaccagtattgcacctattgaaggttcttctggtggaggtcatcatcaacctcaacaacttgatttcatggctgcaacagca |
52766646 |
T |
|
| Q |
208 |
actacagctacaaccagcggtatccatttcgatccttcactttactcagctccgcttaatgctttcatggcagctggtacacaatttttccaaccccaac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52766645 |
actacagctacaaccagcggtatccatttcgacccttcactttactcagctccgcttaatgctttcatggcagctggtacacaatttttccaaccccaac |
52766546 |
T |
|
| Q |
308 |
atcctaattaatatg |
322 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
52766545 |
atcctaattaatatg |
52766531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 105
Target Start/End: Original strand, 32484004 - 32484057
Alignment:
| Q |
52 |
tatcaaacggctgtgaacataggagggcatgttttcaaaggaattctctatgat |
105 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||| | ||||||||||||||||||||| |
|
|
| T |
32484004 |
tatcaaacggctgttaacattggaggacatttgttcaaaggaattctctatgat |
32484057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University