View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5624-Insertion-6 (Length: 292)
Name: NF5624-Insertion-6
Description: NF5624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5624-Insertion-6 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 8 - 292
Target Start/End: Original strand, 52971116 - 52971400
Alignment:
| Q |
8 |
aattcttccatcttgattttcatcaaaaattgtgatcatcttttggcagttctcaaattctgatccttgtttcaatcccaaaataacaagaactctttgc |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52971116 |
aattcttccatcttgattttcatcaaaaattgtgatcatcttttggcagttctcaaattctgatccttgtttcaatcccaaaataacaagaactctttgc |
52971215 |
T |
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| Q |
108 |
aactcctttgcatcaataaaaccatctttgttctcatcaaaaacatcaaaagcttgcttcaactccaccaaactaggctcattctcttcaaacacttcac |
207 |
Q |
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| T |
52971216 |
aactcctttgcatcaataaaaccatctttgttctcatcaaaaacatcaaaagcttgcttcaactcctccaaactaggctcattctcttcaaacacttcac |
52971315 |
T |
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| Q |
208 |
aaagctccttggaaccatacttttcttcaagttcctcgctttctgagctgcnnnnnnntcccattttttccatcaccattttcac |
292 |
Q |
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| T |
52971316 |
aaagctccttggaaccatacttttcttcaagttcctcgctttctgagctgcaaaaaaatcccattttttccatcaccattttcac |
52971400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 52967225 - 52967369
Alignment:
| Q |
8 |
aattcttccatcttgattttcatcaaaaattgtgatcatcttttggcagttctcaaattctgatccttgtttcaatccc--aaaataacaagaactcttt |
105 |
Q |
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||||||| |||||||||||||||||||| | |||| |||||||| || ||||||||||||||||||||||| || ||| |||||| |||||||||||| |
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| T |
52967225 |
aattctttcatcttgattttcatcaaaattcttgataatcttttgacatttctcaaattctgatccttgtttgaaccccaaaaaatagcaagaactcttt |
52967324 |
T |
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| Q |
106 |
gcaactcctttgcatc-aataaaaccatctttgttctcatcaaaa |
149 |
Q |
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| T |
52967325 |
gcaactcctatgcatcaaacaaaaccatctttgttgtcatcaaaa |
52967369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 52967393 - 52967467
Alignment:
| Q |
183 |
ggctcattctcttcaaacacttcacaaagctccttggaaccatacttttcttcaagttcctcgctttctgagctgc |
258 |
Q |
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| T |
52967393 |
ggctcattctcctaaaacacttcacaaacctcctt-gaactatacttttactcaagtttctcacttactgagctgc |
52967467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 2856065 - 2855815
Alignment:
| Q |
8 |
aattcttccatcttgattttcatcaaaaattgtgatcatcttttggcagttctcaaattctgatccttgtttcaatcccaaaataacaagaactctttgc |
107 |
Q |
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| T |
2856065 |
aattcttccatcttgatttgcatcaaaattcttaatcatcttctgacaattctcaacttccgaaccttccttaaatcccaaaatacacataactcttttc |
2855966 |
T |
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| Q |
108 |
aactcctttgcatcaataaaaccatctttgttctcatcaaaaacatcaaaagcttgcttcaactccaccaaactaggctcattctcttcaaacacttcac |
207 |
Q |
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| T |
2855965 |
aactccattgcatcaataaaaccatctttgttctcatcaaaaacatcaaaagccatcttcacttcctccaaacttggctcattctcatcaaacaattcag |
2855866 |
T |
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| Q |
208 |
aaagctccttggaaccatacttttcttcaagttcctcgctttctgagctgc |
258 |
Q |
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||| |||||| |||| ||| |||||||||||||| || ||||||||||||| |
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| T |
2855865 |
aaaactccttcgaactatatttttcttcaagttcatcactttctgagctgc |
2855815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 81 - 256
Target Start/End: Complemental strand, 2851900 - 2851720
Alignment:
| Q |
81 |
aatcccaaaataacaagaactctttgcaactcctttgcatcaataaaaccatctttgttctcatcaaaaacat-------caaaagcttgcttcaactcc |
173 |
Q |
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| T |
2851900 |
aatcccaaaatacacataactctttgcaactccattgcatcaataa--ccatctttgttctcattaaaaccataaaaattcaaaagtcatcttcacttcc |
2851803 |
T |
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| Q |
174 |
accaaactaggctcattctcttcaaacacttcacaaagctccttggaaccatacttttcttcaagttcctcgctttctgagct |
256 |
Q |
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| |||| || |||||||| ||||||| |||| ||||||||| |||||||| |||||||||||||| || ||||||||||| |
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| T |
2851802 |
tctaaacatggttcattctcatcaaacaattcaagaagctcctttgaaccatatttttcttcaagttcatcactttctgagct |
2851720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 258
Target Start/End: Complemental strand, 10477984 - 10477734
Alignment:
| Q |
8 |
aattcttccatcttgattttcatcaaaaattgtgatcatcttttggcagttctcaaattctgatccttgtttcaatcccaaaataacaagaactctttgc |
107 |
Q |
| |
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||||||||||||||| |||||||||||| | |||||||||| || || |||| || |||| | |||| ||||||||||||||| | |||||||||| |
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| T |
10477984 |
aattcttccatcttggttttcatcaaaattcttgatcatcttctgacaattcttaacttctaaaccttcattcaatcccaaaatacacataactctttgc |
10477885 |
T |
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| Q |
108 |
aactcctttgcatcaataaaaccatctttgttctcatcaaaaacatcaaaagcttgcttcaactccaccaaactaggctcattctcttcaaacacttcac |
207 |
Q |
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|| ||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||| ||||||| ||||||||||| ||||||| |||| |
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| T |
10477884 |
aattcctttgcatcaataaatccatctttgttctcatcaaaaacgtcaaaagccatcttcacttcctccaaacttggctcattctcatcaaacaattcag |
10477785 |
T |
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| Q |
208 |
aaagctccttggaaccatacttttcttcaagttcctcgctttctgagctgc |
258 |
Q |
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|||| || || |||||||| ||||| |||||||| || ||||||||||||| |
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| T |
10477784 |
aaagttcatttgaaccatatttttcatcaagttcatcactttctgagctgc |
10477734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 21 - 258
Target Start/End: Complemental strand, 8216341 - 8216104
Alignment:
| Q |
21 |
tgattttcatcaaaaattgtgatcatcttttggcagttctcaaattctgatccttgtttcaatcccaaaataacaagaactctttgcaactcctttgcat |
120 |
Q |
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|||||| |||||||| | | |||||||| || || ||||||| |||||| |||| || |||||||||||| | ||| ||| ||||||| ||| || |
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| T |
8216341 |
tgatttgcatcaaaattcttaatcatcttctgacaattctcaacttctgaaccttccttaaatcccaaaatacacataacatttttcaactccattgaat |
8216242 |
T |
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| Q |
121 |
caataaaaccatctttgttctcatcaaaaacatcaaaagcttgcttcaactccaccaaactaggctcattctcttcaaacacttcacaaagctccttgga |
220 |
Q |
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| T |
8216241 |
caataaaaccatctttgttctcatcaaaaacatcaaaagccatctaaacttcctccaaacttggctcattctcatcaaacaattcagaaaactccttcga |
8216142 |
T |
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| Q |
221 |
accatacttttcttcaagttcctcgctttctgagctgc |
258 |
Q |
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| T |
8216141 |
actatatttttcttcaagttcatcactttctaagctgc |
8216104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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