View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5624_low_2 (Length: 408)
Name: NF5624_low_2
Description: NF5624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5624_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 26460306 - 26460678
Alignment:
| Q |
17 |
atgaataatttgagcctctgttgaacttcctttcctatgcatgtatcaggagttcaacctggaggagcatccgacacaagaggcaatgaataacgttctg |
116 |
Q |
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| T |
26460306 |
atgaataatttgagcctctattgaacttcctttcctatgcatgtatcaggagttcaacctggaggagcatccgacacaagaggcaatgaataacgttccg |
26460405 |
T |
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| Q |
117 |
agacacggtagtaca--tttcacaaggtatacaaccactcaaccggaaaactctgagatgctttgtaaagacgggcgccatgattttggtctcggtacag |
214 |
Q |
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| T |
26460406 |
agacacggtagtacacatttcacaaggtatacaaccactcaaccggaaaactctgagatgctttgtaaagacgggcgccatgattttggtctcggtacag |
26460505 |
T |
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| Q |
215 |
caggatttactgatactacccttagcctctgtctgtctgctctcattgcctgcagttatagcatcggttctcattaacaannnnnnnacatagttatcaa |
314 |
Q |
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| T |
26460506 |
caggatttactgatactacccttagcctctgtctgtctgctctcattgcctgcagttatagcatcggttctcattaacaatttttttacatagttatcaa |
26460605 |
T |
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| Q |
315 |
atcctggtctgataatagtttatgttgatatcattattcatgaaatagtactttaccaaaacgaaaaactaaa |
387 |
Q |
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| T |
26460606 |
atcctggtctgataatagtttatgttgatatcattattcatgaaatagtactttaccaaaacgaaaaactaaa |
26460678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 128 - 266
Target Start/End: Original strand, 26447780 - 26447918
Alignment:
| Q |
128 |
tacatttcacaaggtatacaaccactcaaccggaaaactctgagatgctttgtaaagacgggcgccatgattttggtctcggtacagcaggatttactga |
227 |
Q |
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| T |
26447780 |
tacatttcacaagttataccaccactcaaccggaaaactctgagatgctttgtaaagacgggcgccatgattttggtcttggtggagcaggatttactga |
26447879 |
T |
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| Q |
228 |
tactacccttagcctctgtctgtctgctctcattgcctg |
266 |
Q |
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| T |
26447880 |
tactacccttggcctctgtttgtctgttctcattgcctg |
26447918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 302 - 382
Target Start/End: Original strand, 26447984 - 26448064
Alignment:
| Q |
302 |
acatagttatcaaatcctggtctgataatagtttatgttgatatcattattcatgaaatagtactttaccaaaacgaaaaa |
382 |
Q |
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| T |
26447984 |
acatagttatcaaatcatggtctgctaatagtttatatttatatcattattcatggaataatacttcaccaagacgaaaaa |
26448064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 304 - 383
Target Start/End: Original strand, 5326126 - 5326205
Alignment:
| Q |
304 |
atagttatcaaatcctggtctgataatagtttatgttgatatcattattcatgaaatagtactttaccaaaacgaaaaac |
383 |
Q |
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||||||| |||||| |||| |||| ||||||||||| | |||||||||| |||||||||||| |||||||| |||||| |
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| T |
5326126 |
atagttaacaaatcatggtgtgattctagtttatgtttctctcattattcaagaaatagtacttaaccaaaacaaaaaac |
5326205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 15405798 - 15405851
Alignment:
| Q |
164 |
actctgagatgctttgtaaagacgggcgccatgattttggtctcggtacagcag |
217 |
Q |
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||||||| |||||||||||||| |||||||| ||||||| ||| ||||||||| |
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| T |
15405798 |
actctgaaatgctttgtaaagaggggcgccaggattttgacctctgtacagcag |
15405851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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