View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5624_low_5 (Length: 312)
Name: NF5624_low_5
Description: NF5624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5624_low_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 3 - 312
Target Start/End: Original strand, 38795259 - 38795570
Alignment:
| Q |
3 |
atcaacttcttcacttcctcttcttccttatcatcactattactccttcttcgctttctcaatcacaacccaatcaggtaactaacttctgtgattacct |
102 |
Q |
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| T |
38795259 |
atcaactccttcacttcctcttcttccttatcatcactattactccttcttcgcttgctcaatcacaacacaatcaggtaactaacttctgtgattacct |
38795358 |
T |
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| Q |
103 |
tcaattaattcaaacttctctttttagttgactttcctcgttcctatattttcaaatatttatttataaatgctctgttctaactaatatttggattgtg |
202 |
Q |
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| T |
38795359 |
tcaattaattcaaacttctctttttagttgactttcctcgttcctatattttctaa----tatttataaatgctctgttctaactaatatttggattgtg |
38795454 |
T |
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| Q |
203 |
gaatttagttttgtgaagctggaattggatacggagagtccacatgtggaact------tcatcatcatccaacaagttgttgatcaaaggcggtactgt |
296 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
38795455 |
gaatttagttttgtgtagctggaattggatacggagagtccacatgtggaacttcatcatcatcatcatccaacaagttgttgatcaaaggtggtactgt |
38795554 |
T |
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| Q |
297 |
tgtcaatgctcatcac |
312 |
Q |
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|||||||||||||||| |
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| T |
38795555 |
tgtcaatgctcatcac |
38795570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 190 - 312
Target Start/End: Original strand, 38770024 - 38770146
Alignment:
| Q |
190 |
tatttggattgtggaatttagttttgtgaagctggaattggatacggagagtccacatgtggaacttcatcatcatccaacaagttgttgatcaaaggcg |
289 |
Q |
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|||||| | ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| | |||||||||||||| ||||| | |
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| T |
38770024 |
tatttgaactgtggaatttagttttgtgaagctggaattgaatccggagagtccacatgtggaacttcatcatcaacaaacaagttgttgattaaaggtg |
38770123 |
T |
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| Q |
290 |
gtactgttgtcaatgctcatcac |
312 |
Q |
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| T |
38770124 |
gtactgttgtcaatgctcatcac |
38770146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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