View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5625-Insertion-10 (Length: 395)

Name: NF5625-Insertion-10
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5625-Insertion-10
NF5625-Insertion-10
[»] chr2 (5 HSPs)
chr2 (198-395)||(29963803-29964001)
chr2 (198-356)||(2038123-2038279)
chr2 (8-116)||(29963613-29963721)
chr2 (8-69)||(2038485-2038546)
chr2 (66-116)||(2038355-2038405)
[»] chr6 (2 HSPs)
chr6 (198-389)||(34518533-34518726)
chr6 (66-111)||(8889324-8889369)
[»] scaffold0004 (1 HSPs)
scaffold0004 (198-395)||(188818-189015)
[»] chr8 (3 HSPs)
chr8 (249-384)||(44667815-44667951)
chr8 (354-394)||(5538195-5538236)
chr8 (310-363)||(6817202-6817255)
[»] scaffold0172 (1 HSPs)
scaffold0172 (8-69)||(35177-35238)
[»] chr7 (2 HSPs)
chr7 (249-302)||(12539066-12539119)
chr7 (354-394)||(16420529-16420570)
[»] scaffold0003 (1 HSPs)
scaffold0003 (354-394)||(9241-9282)
[»] chr4 (1 HSPs)
chr4 (310-355)||(28655466-28655511)


Alignment Details
Target: chr2 (Bit Score: 183; Significance: 7e-99; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 198 - 395
Target Start/End: Original strand, 29963803 - 29964001
Alignment:
Q  198 ggcagttgaaacaaagcaaaagtgcttgtgtttccctgtacgatatacgataaaatagggaatgattttggttcatcattaataattgacatgaagagtg 297  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29963803 ggcagttgaaacaaagcaaaagtacttgtgtttccctgtatgatatacgataaaatagggaatgattttggttcatcattaataattgacatgaagagtg 29963902  T
Q  298 ataatgatgataggattcttacttgtctccctagagtgaatgtttgttttctctccttcctccttcaga-cccctttcccgttctctttctctttctcc 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  29963903 ataatgatgataggattcttacttgtctccctagagtgaatgtttgttttctctccttcctccttcagaccccctttcccgttctctttctctttctcc 29964001  T

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Target: chr2; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 198 - 356
Target Start/End: Complemental strand, 2038279 - 2038123
Alignment:
Q  198 ggcagttgaaacaaagcaaaagtgcttgtgtttccctgtacgatatacgataaaatagggaatgattttggttcatcattaataattgacatgaagagtg 297  Q
    ||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||    
T  2038279 ggcagttgaaacaaagcaaaagtacttgtgtt-ccctgtatgatatacgataaaatagggaatgattttggtt-atcattaataattgacatgaatagtg 2038182  T
Q  298 ataatgatgataggattcttacttgtctccctagagtgaatgtttgttttctctccttc 356  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2038181 atagtgatgataggattcttacttgtctccctagagtgaatgtttgttttctctccttc 2038123  T

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Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 29963613 - 29963721
Alignment:
Q  8 tctaccacaagaatatcttctctatgttgcaagattctaaataaaataacttctagaacttacttggtgatgatgaatttcttaaagtggactctaatct 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29963613 tctaccacaagaatatcttctctatgttgcaagattctaaataaaataacttctagaacttacttggtgatgatgaatttcttaaagtggactctaatct 29963712  T
Q  108 ctctcgacc 116  Q
    |||||||||    
T  29963713 ctctcgacc 29963721  T

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Target: chr2; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 69
Target Start/End: Complemental strand, 2038546 - 2038485
Alignment:
Q  8 tctaccacaagaatatcttctctatgttgcaagattctaaataaaataacttctagaactta 69  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2038546 tctaccacaagaatatcttctctatgttgcaagatcctaaataaaataacttctagaactta 2038485  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 2038405 - 2038355
Alignment:
Q  66 cttacttggtgatgatgaatttcttaaagtggactctaatctctctcgacc 116  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||    
T  2038405 cttacttggtgacgatgaatttcttatagtggactctaatctctctcgacc 2038355  T

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Target: chr6 (Bit Score: 141; Significance: 8e-74; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 198 - 389
Target Start/End: Original strand, 34518533 - 34518726
Alignment:
Q  198 ggcagttgaaacaaagcaaaagtgcttgtgtttccctgtacgatatacgataaaatagggaatgattttggttcatcatta---ataattgacatgaaga 294  Q
    |||||||||||||||||||| || |||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||   ||||||||||||||||    
T  34518533 ggcagttgaaacaaagcaaaggtacttgtgtt-ccctgtatgataaacgataaaatagggaatgattttggttcatcattattaataattgacatgaaga 34518631  T
Q  295 gtgataatgatgataggattcttacttgtctccctagagtgaatgtttgttttctctccttcctccttcagacccctttcccgttctctttctct 389  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  ||||| |||||    
T  34518632 gtgataatgatgataggattcttacttgtctccctagagtgaatatttgttttctctccttcctccttcagacccctttcccagtctctctctct 34518726  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 111
Target Start/End: Complemental strand, 8889369 - 8889324
Alignment:
Q  66 cttacttggtgatgatgaatttcttaaagtggactctaatctctct 111  Q
    |||||||||||||||||||||||||||||| |||||||||||||||    
T  8889369 cttacttggtgatgatgaatttcttaaagttgactctaatctctct 8889324  T

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Target: scaffold0004 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 198 - 395
Target Start/End: Original strand, 188818 - 189015
Alignment:
Q  198 ggcagttgaaacaaagcaaaagtgcttgtgtttccctgtacgatatacgataaaatagggaatgattttggttcatcattaataattgacatgaagagtg 297  Q
    ||||||||||||||||||||||| |||||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| |     
T  188818 ggcagttgaaacaaagcaaaagtacttgtgtt-ccctctatgatatacgataaaatagggaatgattctggttcatcattaataattaaaatgaagattt 188916  T
Q  298 ataatgatgataggattcttacttgtctccctagagtgaatgtttgttttctctccttcctccttcaga-cccctttcccgttctctttctctttctcc 395  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||    
T  188917 ataatgatgataggattcttacttgtctccctaaagtgaatgtttgttttctctccttcctcctttagaccccctttcccgttccctttctctttctcc 189015  T

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Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 249 - 384
Target Start/End: Complemental strand, 44667951 - 44667815
Alignment:
Q  249 aaaatagggaatgattttggttcatcattaataattgacatgaagagtgataatgatgataggattcttacttgtctccctagagtgaatgtttgttttc 348  Q
    ||||||||||||||||||||||||||| ||||| |||  ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  44667951 aaaatagggaatgattttggttcatcaataatagttgcaatgaagagtaataatgataataggattcttacttgtctccctagagtgaatgtttgttttc 44667852  T
Q  349 tctccttcctccttcag-acccctttcccgttctctt 384  Q
    ||||||||||||||||| |||| ||||||||||||||    
T  44667851 tctccttcctccttcagaacccttttcccgttctctt 44667815  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 5538195 - 5538236
Alignment:
Q  354 ttcctccttcagac-ccctttcccgttctctttctctttctc 394  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  5538195 ttcctccttcagactccctttcccgttctctttctctttctc 5538236  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 363
Target Start/End: Complemental strand, 6817255 - 6817202
Alignment:
Q  310 ggattcttacttgtctccctagagtgaatgtttgttttctctccttcctccttc 363  Q
    ||||| ||||||||||| |||||||||||||||| |  ||||||||| ||||||    
T  6817255 ggatttttacttgtctctctagagtgaatgtttgatcactctccttcttccttc 6817202  T

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Target: scaffold0172 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 8 - 69
Target Start/End: Original strand, 35177 - 35238
Alignment:
Q  8 tctaccacaagaatatcttctctatgttgcaagattctaaataaaataacttctagaactta 69  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35177 tctaccacaagaatatcttctctatgttgcaagatcctaaataaaataacttctagaactta 35238  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 302
Target Start/End: Original strand, 12539066 - 12539119
Alignment:
Q  249 aaaatagggaatgattttggttcatcattaataattgacatgaagagtgataat 302  Q
    ||||||||||||||||||||||||||| ||||| |||  ||||||||| |||||    
T  12539066 aaaatagggaatgattttggttcatcaataatagttgcaatgaagagtaataat 12539119  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 16420570 - 16420529
Alignment:
Q  354 ttcctccttcagac-ccctttcccgttctctttctctttctc 394  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  16420570 ttcctccttcagactccctttcccattctctttctctttctc 16420529  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 9282 - 9241
Alignment:
Q  354 ttcctccttcagac-ccctttcccgttctctttctctttctc 394  Q
    |||||||||||||| ||||||||| |||||||||||||||||    
T  9282 ttcctccttcagactccctttcccattctctttctctttctc 9241  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 28655466 - 28655511
Alignment:
Q  310 ggattcttacttgtctccctagagtgaatgtttgttttctctcctt 355  Q
    ||||||||||||||||  |||||||||||||||| | |||||||||    
T  28655466 ggattcttacttgtctttctagagtgaatgtttgatctctctcctt 28655511  T

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