View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5625-Insertion-2 (Length: 1012)
Name: NF5625-Insertion-2
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5625-Insertion-2 |
 | |
|
| [»] scaffold0062 (2 HSPs) |
| | |
|
| [»] scaffold0267 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 146 - 638
Target Start/End: Original strand, 37603727 - 37604233
Alignment:
| Q |
146 |
gaagaaattaatatgcaatagtatgaaagatagtattattgaataattgattgttgatgtacatagaaaaatatatttgacaatactcaaaatgatgaaa |
245 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37603727 |
gaagaaattaatatgcaacagtatgaaagatagtattattgaataattgattg---atgtacatagaaaaatatatttgacaatactcaaaatgatgaaa |
37603823 |
T |
|
| Q |
246 |
taaaccacagttttaaa-tataagtcaatagagaaatatattttatagatatttaagtatattcaattttttggatataaaatgacataatttttgtagt |
344 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37603824 |
taaaccatagttttaaaatataagtcaatagaaaaatatattttatagatatttaagtatattcaattttttggatataaaatgacataatttttgtagt |
37603923 |
T |
|
| Q |
345 |
ccctctgcttttttagtgatgataatattacttatgta--------------------aatcattatagtatatgatttcagcaaaaaatattagtatat |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37603924 |
ccctctgcttttttagtgatgataatattacttatgtattagtagatttttttatgtaaattattatagtatatgatttcagcaaaaaatattagtatat |
37604023 |
T |
|
| Q |
425 |
aattttgcccccgcttaacaatatttctggatctgaccctgagagttccgtatacacaatccaataccgaagcatttctgatcaccaagtagcgctatgt |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37604024 |
aattttgcccccgcttaacaatatttctggatctgacc-tgagagttccgtatacacaatccaataccgaagcatttctgatcaccaagtagcgctatgt |
37604122 |
T |
|
| Q |
525 |
ccacgttacatttgacaaatccttcctctggtggcagccacctgatattatgctgctcttcctgtttctgttcgccatatttttggtgttttaggacata |
624 |
Q |
| |
|
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37604123 |
cgacgttacatttgacaaatccttcctccggtggcagccacctgatattatgctgctctccctgtttctgttcgccatatttttggtgttttaggac--- |
37604219 |
T |
|
| Q |
625 |
atttcccactgata |
638 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
37604220 |
atttcccactgata |
37604233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 718 - 986
Target Start/End: Original strand, 37604242 - 37604517
Alignment:
| Q |
718 |
cataaacaccacaacagagctgctatgtccctgcataattcatttggcagcctgcagaaaatagaaaacaaatgtgctgccagtcctgtggcactaccga |
817 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37604242 |
cataaacaccacaacagagctgctatgtccctgcataattcatttggcagcctgcagaaaatagaaaacaaatgtgctgccagtcctgtggcactaccga |
37604341 |
T |
|
| Q |
818 |
tacctgctgttatcgtatcccataacccagcttc-atcc-aacctgtttccccacttcacatccgat-aaaatgtgccaatcattctcat-attggtctc |
913 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
37604342 |
tacctgctgttatcgtatcccataacctagcttcaatccaaacctgtttccccacttcacatccgataaaaatgtgccaatcattctcataattggtctc |
37604441 |
T |
|
| Q |
914 |
acagcaggggcagtagtccgaagaaggaacccccctt-cttg-agtcycatatatgcg-agggagtacacccctca |
986 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||| |||| |||| ||||||||| |||||| |||||||||| |
|
|
| T |
37604442 |
acagaaggggcagtagtccgaagaagggaccccccttccttgaagtcttatatatgcgaagggagaacacccctca |
37604517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 37603587 - 37603656
Alignment:
| Q |
7 |
aaccttctcgttagcaggcatggtgcaagttcatcaaattgggggcacttgactccacatgctttattac |
76 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37603587 |
aaccttctcgttagcaggcatgatgcaagttcatcaaattgggggcacttgactccacatgctttattac |
37603656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 5e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 146 - 317
Target Start/End: Complemental strand, 24876075 - 24875902
Alignment:
| Q |
146 |
gaagaaattaatatgcaatagtatgaaagatagtattattgaataattgattgttgatgtacatagaaaaatatatttgacaatactcaaaatgatgaaa |
245 |
Q |
| |
|
|||||||||||||||||| | ||||||| ||| |||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
24876075 |
gaagaaattaatatgcaaaaatatgaaatataatattattgaataattgattgttgatgtatatagacaaatatattcgacaatactcaaaatgatgaaa |
24875976 |
T |
|
| Q |
246 |
taaaccacagtttt-aaatat-aagtcaatagagaaatatattttatagatatttaagtatattcaattttttg |
317 |
Q |
| |
|
||||| | |||||| |||||| ||||||||||||||||| |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
24875975 |
taaacaatagttttaaaatataaagtcaatagagaaatacatttcatagatacttaagtatattcaattttttg |
24875902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 299 - 379
Target Start/End: Complemental strand, 24875900 - 24875822
Alignment:
| Q |
299 |
aagtatattcaattttttggatataaaatgacataatttttgtagtccctctgcttttttagtgatgataatattacttat |
379 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||| | ||||||| |||||| |
|
|
| T |
24875900 |
aagtatattcaattgtttggatataaaatgatataatttttgtagtc--tctgcttttttagtgttaataatatcacttat |
24875822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 1e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 146 - 345
Target Start/End: Complemental strand, 1878831 - 1878633
Alignment:
| Q |
146 |
gaagaaattaatatgcaatagtatgaaagatagtattattgaataattgattgttgatgtacatagaaaaatatatttgacaatactcaaaatgatgaaa |
245 |
Q |
| |
|
|||||||||||||||||| | |||||||||| |||||||||||||||||| ||||| |||||||| ||| |||||| ||||||||||||||||||| || |
|
|
| T |
1878831 |
gaagaaattaatatgcaacaacatgaaagataatattattgaataattgatcgttgacgtacatag-aaattatattcgacaatactcaaaatgatg-aa |
1878734 |
T |
|
| Q |
246 |
taaaccacagttttaa-atat-aagtcaatagagaaatatattttatagatatttaagtatattcaattttttggatataaaatgacataatttttgtag |
343 |
Q |
| |
|
||||| | | |||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
1878733 |
taaacaataattttaacatataaagtcaatagctaaatatattttatagatatttaagtatattcaa-tttttggataaaaaatgacataatttttgtag |
1878635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 88; Significance: 8e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 146 - 382
Target Start/End: Complemental strand, 49068997 - 49068761
Alignment:
| Q |
146 |
gaagaaattaatatgcaatagtatgaaagatagtattattgaataattgattgttgatgtacatagaaaaatatatttgacaatactcaaaatgatgaaa |
245 |
Q |
| |
|
||||||| ||||||| | ||||||| ||||| |||| ||||||||||| ||||||| || ||||||||||||||| | ||| | |||||||| ||| |
|
|
| T |
49068997 |
gaagaaacaaatatgccacagtatgagagataatattgttgaataattgtttgttgacatatatagaaaaatatattcaataatgttgaaaatgataaaa |
49068898 |
T |
|
| Q |
246 |
taaaccacagttttaaa-tataa-gtcaatagagaaatatattttatagatatttaagtatattcaattttttggatataaaatgacataatttttgtag |
343 |
Q |
| |
|
|||| | | ||| ||| ||||| |||| |||| |||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49068897 |
taaataataatttcaaaatataaagtcagtagaaaaatatatttcatagaaatttaagtatcttcaattttttggatataaaatgacataatttttgtag |
49068798 |
T |
|
| Q |
344 |
tccctctgcttttttagtgatgataatattacttatgta |
382 |
Q |
| |
|
| ||||||| |||||||||| ||||||| ||||||||| |
|
|
| T |
49068797 |
t--ctctgctcttttagtgataataatatcacttatgta |
49068761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062 (Bit Score: 85; Significance: 5e-40; HSPs: 2)
Name: scaffold0062
Description:
Target: scaffold0062; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 146 - 381
Target Start/End: Complemental strand, 12757 - 12541
Alignment:
| Q |
146 |
gaagaaattaatatgcaatagtatgaaagatagtattattgaataattgattgttgatgtacatagaaaaatatatttgacaatactcaaaatgatgaaa |
245 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
12757 |
gaagaaattaatatgcaacagtatgaaagataatagtattgaataattgattgttgacgtaca-------------------atactcaaaatgatgaaa |
12677 |
T |
|
| Q |
246 |
taaaccacagttttaaa-tat-aagtcaatagagaaatatattttatagatatttaagtatattcaattttttggatataaaatgacataatttttgtag |
343 |
Q |
| |
|
||||| | ||||||||| || |||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
12676 |
taaacaatagttttaaaatacgaagtcaatagagaaatatatttcatagatgtttaagtatattcaattttttggatataaaatgacataatttttagag |
12577 |
T |
|
| Q |
344 |
tccctctgcttttttagtgatgataatattacttatgt |
381 |
Q |
| |
|
| || |||||||| |||||| ||||||| ||||||| |
|
|
| T |
12576 |
t--ctttgctttttcagtgataataatatcgcttatgt |
12541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0062; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 43 - 75
Target Start/End: Complemental strand, 12881 - 12849
Alignment:
| Q |
43 |
aattgggggcacttgactccacatgctttatta |
75 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
12881 |
aattgggggcacttgactccacatgctttatta |
12849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 7e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 464 - 947
Target Start/End: Original strand, 8178378 - 8178863
Alignment:
| Q |
464 |
tgagagttccgtatacacaatccaataccgaagcatttctgatcaccaagtagcgctatgtccacgttacatttgacaaatccttcctctggtggcagcc |
563 |
Q |
| |
|
|||||||| |||||||||| |||| |||||||||||||||||||| || || ||| ||| || || || |||||| |||||| || |||||| ||| |
|
|
| T |
8178378 |
tgagagtttcgtatacacataccaacaccgaagcatttctgatcactaaacagtgctgcgtcgacattgcacttgacatatccttgatccggtggctgcc |
8178477 |
T |
|
| Q |
564 |
acctgatattatgctgctcttcctgtttctgttcgccatatttttggtgttttaggacataatttcccactgataaatagctttacgcgctaactggaca |
663 |
Q |
| |
|
| ||||| || || |||| |||||| | |||||| | | ||||||| ||| | ||| | | ||||||| ||||| ||| ||||||| ||| ||| |
|
|
| T |
8178478 |
agctgatgttttgttgctgttcctgctgctgttcactgtttttttggcatttacgagcat--tctgccactgaaaaataccttcgcgcgctagctgtaca |
8178575 |
T |
|
| Q |
664 |
acaacaccaacattctgaacttcgccctcccaaactttatcattacggcaccttcataaacaccacaacagagctgctatgtccctgcataattcatttg |
763 |
Q |
| |
|
| | || ||||||||| || ||||| ||||| |||||||||||||||| | |||| ||||| |||| ||||||||||||||||| || | |||| |
|
|
| T |
8178576 |
gccatacgaacattctgtacctcgccttcccacactttatcattacggcggcgccatatgcaccataacaccgctgctatgtccctgcacaaatgatttt |
8178675 |
T |
|
| Q |
764 |
gcagcctgcagaaaatagaaaacaaatgtgctgccagtcctgtggcactaccgatacctgctgttatcgtatcccataacccagcttc-atcca-acctg |
861 |
Q |
| |
|
|||||||||| |||| || ||| |||||||| |||||||| ||||| | |||||||||||| ||| |||||||| ||||||||| ||||| || || |
|
|
| T |
8178676 |
gcagcctgcaaaaaacagtaaataaatgtgcagccagtcccgtggcggcatcgatacctgctgctattacatcccatagcccagcttcaatccatacttg |
8178775 |
T |
|
| Q |
862 |
tttccccacttcacatccgat-aaaatgtgccaatcattctcat-attggtctcacagcaggggcagtagtccgaagaaggaaccccc |
947 |
Q |
| |
|
|||| | || |||||||||| |||| ||||||||||||||||| |||||||||||| ||||||| | |||||| |||| |||||| |
|
|
| T |
8178776 |
tttcgctgctacacatccgatgaaaacgtgccaatcattctcataattggtctcacaatgggggcagcaatccgaacaagggaccccc |
8178863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0267 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0267
Description:
Target: scaffold0267; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 260 - 345
Target Start/End: Original strand, 17412 - 17498
Alignment:
| Q |
260 |
aaatataag-tcaatagagaaatatattttatagatatttaagtatattcaattttttggatataaaatgacataatttttgtagtc |
345 |
Q |
| |
|
||||||||| ||||| |||||||||||| ||||||||| | |||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17412 |
aaatataagatcaatgaagaaatatatttcgtagatattttgatgtattcaattttttggatataaaatgacatagtttttgtagtc |
17498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University