View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5625-Insertion-5 (Length: 912)

Name: NF5625-Insertion-5
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5625-Insertion-5
NF5625-Insertion-5
[»] chr7 (1 HSPs)
chr7 (7-912)||(2795685-2796611)
[»] chr4 (2 HSPs)
chr4 (641-774)||(48670950-48671084)
chr4 (288-356)||(48671632-48671699)
[»] chr2 (3 HSPs)
chr2 (78-113)||(22382224-22382259)
chr2 (78-113)||(22914250-22914285)
chr2 (78-113)||(22999276-22999311)
[»] chr1 (1 HSPs)
chr1 (83-113)||(39714769-39714799)
[»] chr6 (1 HSPs)
chr6 (741-774)||(16391689-16391722)


Alignment Details
Target: chr7 (Bit Score: 692; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 7 - 912
Target Start/End: Complemental strand, 2796611 - 2795685
Alignment:
Q  7 acttcggagttcgccatggttaactttgtccttcctggatggttgaaaacaagnnnnnnnnntacaataacaattagcaccgaggagaatcaaacttgag 106  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||         |||||||||||||| |||||||||||||||||| ||||    
T  2796611 acttcggagttcaccatggttaactttgtccttcctggatggttgaaaacaagacaaaaaa-tacaataacaattaacaccgaggagaatcaaacctgag 2796513  T
Q  107 accttgaattttctggacttggaaacttagaaacttcagttgagatatagagaaactaactttaaactactaaattactacaaagggtttgagaggtgga 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2796512 accttgaattttctggacttggaaacttagaaacttcagttgagatatagagaaactaactttaaactactaaattactacaaagggtttgagaggtgga 2796413  T
Q  207 atcttcttcaactaaatgctaatcattgtcacaagggatacaaaataggatacacataccctctagagaagccattgaatttctgaactatgaaattgat 306  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    | |||||||| ||||||||||    
T  2796412 atcttcttcacctaaatgctaatcattgtcacaagggatacaaaataggatacacataccctctagaggagccataagttctctgaactgtgaaattgat 2796313  T
Q  307 tagctgttctagccatccaaaggtttaaataggatccgactcctctaaaatgaacaaatcagtgt----------taagtgagtaatattaatagacaaa 396  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||| || |||| || | |          |||||||||||||||||||||||||    
T  2796312 tagctgttctagccatccaaaggtttagataggatccgactcctctaaaacgagcaaaccactttaattagagtgtaagtgagtaatattaatagacaaa 2796213  T
Q  397 ctaatggtaaattgtatatgtgcatgtat-------aacatatcattattgaa-------cactcttgatttcttactttacacttcactcactttagag 482  Q
    ||||||  |||||||| |||| |||||||       |||||||||||||||||       ||||||||||||||| |||||||||| |||||||||||||    
T  2796212 ctaatg--aaattgtaaatgtacatgtattatgtataacatatcattattgaaatattaacactcttgatttcttgctttacactttactcactttagag 2796115  T
Q  483 gaatcaaatatgtctaaacatttgttcagtttttgtgtcgacatactctttcctactatcagaaaagaaaatatattgaatgactcgttgcaaaattgtt 582  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||  |||||||    
T  2796114 gaatcaaatatgtctaaacatttgttcagtttttgtgtcgacatactctttcctattatcagaaaagaaaatatattgaatgactccttgcggaattgtt 2796015  T
Q  583 tataaaattgttacaagtgaaaatggacataatgtagaaagacttgatggcaaaaaagagattgatttcacttagaaactatagcagagaaacaaatatt 682  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2796014 tataaaattgttataagtgaaaatggacataatgtagaaagacttgatggcaaaaaagagattgatttcacttagaaactatagcagagaaacaaatatt 2795915  T
Q  683 aaatcataaaattcgtgcaacggtaaatcacttactgctctcttttcgctattcaaccttcggattgatggagctcgtgccattggggaagcggttgtta 782  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2795914 aaatcataaaattcgtgcaacggtaaatcacttactgctctcttttcgctattcaaccttcggattgatggagctcgtgccattggggaagcggttgtta 2795815  T
Q  783 caggtattctgcagaataaaatttataacatcaaaattccgatttgcagaagttttatccatattagaaccatattttttaaaattttgtattctgatat 882  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2795814 caggtattctgcagaataaaatttataacatcaaaattccgatttgcagaagttttatccatattagaaccatatttttttaaattttgtattctgatat 2795715  T
Q  883 tctccgttacctcttatgaacgtcaacaaa 912  Q
    ||||||||||||||||||||||||||||||    
T  2795714 tctccgttacctcttatgaacgtcaacaaa 2795685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 7e-27; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 641 - 774
Target Start/End: Complemental strand, 48671084 - 48670950
Alignment:
Q  641 agattgatttcacttagaaactatagcagagaaacaaatatt-aaatcataaaattcgtgcaacggtaaatcacttactgctctcttttcgctattcaac 739  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||   | | |||| |||| ||||||| |||| ||||| || | ||| |    
T  48671084 agattgatttcacttggaaactatagcagagaaacaaatattaaaatcataaaagatgcgtaacgttaaaccacttaccgctcccttttggccagtcatc 48670985  T
Q  740 cttcggattgatggagctcgtgccattggggaagc 774  Q
    ||||||| |||||||||||||||||||| ||||||    
T  48670984 cttcggactgatggagctcgtgccattgaggaagc 48670950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 288 - 356
Target Start/End: Complemental strand, 48671699 - 48671632
Alignment:
Q  288 tctgaactatgaaattgattagctgttctagccatccaaaggtttaaataggatccgactcctctaaaa 356  Q
    |||||| || |||||||||||| |||||||||||||||||| ||| |||||||||   |||||||||||    
T  48671699 tctgaagtacgaaattgattagttgttctagccatccaaagattt-aataggatcaagctcctctaaaa 48671632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 113
Target Start/End: Original strand, 22382224 - 22382259
Alignment:
Q  78 aattagcaccgaggagaatcaaacttgagaccttga 113  Q
    |||||||||||||||||||| |||||||||||||||    
T  22382224 aattagcaccgaggagaatcgaacttgagaccttga 22382259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 113
Target Start/End: Original strand, 22914250 - 22914285
Alignment:
Q  78 aattagcaccgaggagaatcaaacttgagaccttga 113  Q
    |||||||||||||||||||| |||||||||||||||    
T  22914250 aattagcaccgaggagaatcgaacttgagaccttga 22914285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 113
Target Start/End: Complemental strand, 22999311 - 22999276
Alignment:
Q  78 aattagcaccgaggagaatcaaacttgagaccttga 113  Q
    |||||||||||||||||| |||||||||||||||||    
T  22999311 aattagcaccgaggagaagcaaacttgagaccttga 22999276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 113
Target Start/End: Original strand, 39714769 - 39714799
Alignment:
Q  83 gcaccgaggagaatcaaacttgagaccttga 113  Q
    |||||||||||||||||||||||||||||||    
T  39714769 gcaccgaggagaatcaaacttgagaccttga 39714799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 741 - 774
Target Start/End: Complemental strand, 16391722 - 16391689
Alignment:
Q  741 ttcggattgatggagctcgtgccattggggaagc 774  Q
    ||||||||||||||||||||||||||| ||||||    
T  16391722 ttcggattgatggagctcgtgccattgaggaagc 16391689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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