View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5625-Insertion-6 (Length: 763)

Name: NF5625-Insertion-6
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5625-Insertion-6
NF5625-Insertion-6
[»] chr1 (8 HSPs)
chr1 (422-763)||(37581906-37582243)
chr1 (7-311)||(37582330-37582634)
chr1 (88-204)||(4652122-4652238)
chr1 (88-194)||(11839561-11839668)
chr1 (91-211)||(2987756-2987876)
chr1 (83-127)||(23770883-23770927)
chr1 (368-402)||(37582263-37582297)
chr1 (88-135)||(28394764-28394811)
[»] chr8 (6 HSPs)
chr8 (88-236)||(30235746-30235895)
chr8 (83-223)||(5214932-5215072)
chr8 (88-203)||(35062795-35062910)
chr8 (90-203)||(10552604-10552717)
chr8 (91-233)||(32945331-32945469)
chr8 (92-188)||(25184755-25184852)
[»] chr7 (5 HSPs)
chr7 (83-236)||(9350015-9350168)
chr7 (88-204)||(38485900-38486016)
chr7 (92-135)||(28534138-28534181)
chr7 (92-135)||(47456707-47456750)
chr7 (88-135)||(48058302-48058349)
[»] chr5 (6 HSPs)
chr5 (88-211)||(31721998-31722121)
chr5 (88-236)||(31742466-31742615)
chr5 (96-236)||(24436130-24436270)
chr5 (88-196)||(36979255-36979363)
chr5 (166-210)||(24071970-24072014)
chr5 (151-196)||(30097675-30097721)
[»] chr3 (3 HSPs)
chr3 (88-236)||(1652506-1652654)
chr3 (88-236)||(7966698-7966843)
chr3 (92-208)||(30935011-30935127)
[»] chr2 (9 HSPs)
chr2 (83-233)||(6173842-6173993)
chr2 (88-236)||(31902042-31902190)
chr2 (91-212)||(9926534-9926653)
chr2 (140-236)||(18681381-18681477)
chr2 (88-236)||(915069-915217)
chr2 (92-195)||(22884747-22884852)
chr2 (167-223)||(29043993-29044049)
chr2 (92-190)||(33788259-33788358)
chr2 (167-196)||(24165886-24165915)
[»] chr6 (7 HSPs)
chr6 (88-223)||(27774910-27775045)
chr6 (88-236)||(12794419-12794568)
chr6 (166-236)||(6946878-6946949)
chr6 (88-222)||(9224249-9224384)
chr6 (88-211)||(26215652-26215776)
chr6 (166-210)||(17278171-17278215)
chr6 (90-135)||(21265394-21265439)
[»] chr4 (4 HSPs)
chr4 (83-194)||(19432382-19432494)
chr4 (88-231)||(35800749-35800894)
chr4 (166-223)||(43077282-43077339)
chr4 (167-236)||(43373801-43373870)


Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 422 - 763
Target Start/End: Complemental strand, 37582243 - 37581906
Alignment:
Q  422 cttctttgtattaaagattggtcattgacttaataatcttctggtttataattatataaaaatgtgagtaatctatttttatgtgaagcgaactactcac 521  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37582243 cttctttgtattaaagattggtcattgacttaataatcttctggtttataattatataaaaatgtgagtaatctatttttatgtgaagcgaactactcac 37582144  T
Q  522 actgttattatttcttagcagcaaatgtgatccaaaaccaagaaagtcacgttcagttgttaccgtaatttaaattatgttgatacctcttttacgttgc 621  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37582143 actgttattatttcttagcagcaaatgtgatccaaaaccaagaaagtcacgttcagttgttaccgtaatttaaattatgttgatacctcttttacgttgc 37582044  T
Q  622 tctatttatctattaattttctttcatatttctttatttcagaaaatgaac---------caaaagtcatggtgaatttcccatcatagcatttagcatc 712  Q
    || |||||||||||||||||||||||           ||||||||||||||         ||||||||||||||||||||||||||||||||||||||||    
T  37582043 tcaatttatctattaattttctttca-----------ttcagaaaatgaaccaaaatacacaaaagtcatggtgaatttcccatcatagcatttagcatc 37581955  T
Q  713 aatgaatccaaatcccttctccatataatgacaggaattaggacaggtaca 763  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  37581954 aatgaatccaaatccct--tccatataatgacaggaattaggacaggtaca 37581906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 311
Target Start/End: Complemental strand, 37582634 - 37582330
Alignment:
Q  7 agccagaccctatgaaagatcctgatatcgtacacccccaaaatcaagaacctagttatttcannnnnnnnnnnnngaattagcaaaattttattaaaaa 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||                |||| |||||||||||||||||||    
T  37582634 agccagaccctatgaaagatcctgatatcgtacacccccaaaatcaagaagctagtttttattttttattttttttgaatcagcaaaattttattaaaaa 37582535  T
Q  107 ccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaacaaacatcaacaaaga 206  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||    
T  37582534 ccaagtctctgcacaagacgaacagagacatacgttatagaaagtacaaactaagacgacgtatattgacggaacacccgaaaataaacatcaacaaaga 37582435  T
Q  207 cacccttacgatcaacaaccataaggacaagtgcatgcaagtgcttatgaattattcaccacgtcaaatgcaacctttattgtgaaatttggatttgtga 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37582434 cacccttacgatcaacaaccataaggacaagtgcatgcaagtgcttatgaattattcaccacgtcaaatgcaacctttattgtgaaatttggatttgtga 37582335  T
Q  307 ttagt 311  Q
    |||||    
T  37582334 ttagt 37582330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 4652238 - 4652122
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaagacgacgtatataggcggaacacccga 187  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||  | |||| |||||||||||||||||||  ||||||||||||||||||| ||    
T  4652238 agcaaaattttattaaaaaccaagtttctgcacaagacgaagagagaccggtgttatagaaagtacaaactaagacaccgtatataggcggaacacctga 4652139  T
Q  188 aaacaaacatcaacaaa 204  Q
    ||||||||| |||||||    
T  4652138 aaacaaacaccaacaaa 4652122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 88 - 194
Target Start/End: Complemental strand, 11839668 - 11839561
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaact-aagacgacgtatataggcggaacacccg 186  Q
    ||||||||||||||||||| || |||||||||||||||||||| |||| || ||||||||||||||||||| ||| || |||||| | |||||||||||     
T  11839668 agcaaaattttattaaaaatcaggtctctgcacaagacgaacaaagacctgtgttacagaaagtacaaactaaaggcgtcgtataaaagcggaacaccca 11839569  T
Q  187 aaaacaaa 194  Q
    ||||||||    
T  11839568 aaaacaaa 11839561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 91 - 211
Target Start/End: Original strand, 2987756 - 2987876
Alignment:
Q  91 aaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaa 190  Q
    |||||||||||||||| || |||||| |||||||| || ||| ||     |||| |||||||||||||||| || ||||||||||||||||| |||||||    
T  2987756 aaaattttattaaaaatcaggtctctacacaagacaaatagataccgatattaccgaaagtacaaactaaggcgccgtatataggcggaacatccgaaaa 2987855  T
Q  191 caaacatcaacaaagacaccc 211  Q
    |||||| ||||||| ||||||    
T  2987856 caaacaccaacaaaaacaccc 2987876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 23770927 - 23770883
Alignment:
Q  83 gaattagcaaaattttattaaaaaccaagtctctgcacaagacga 127  Q
    |||| |||||||||||||||||||||| |||||||||||||||||    
T  23770927 gaatcagcaaaattttattaaaaaccaggtctctgcacaagacga 23770883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 368 - 402
Target Start/End: Complemental strand, 37582297 - 37582263
Alignment:
Q  368 agattgagtttttcatatttcagacagaatatatt 402  Q
    |||||||||||||||||||||||||||||||||||    
T  37582297 agattgagtttttcatatttcagacagaatatatt 37582263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 28394764 - 28394811
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagac 135  Q
    ||||||||||||||||||||||| |||||| |||| ||||||| ||||    
T  28394764 agcaaaattttattaaaaaccaaatctctgtacaaaacgaacaaagac 28394811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 6e-36; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 30235746 - 30235895
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaa-gacgacgtatataggcggaacacccg 186  Q
    |||||| |||||||||||||||||||||||| |||||| |||| ||||  | ||||||||| ||||||||||| | |  ||||||||||||||||| |||    
T  30235746 agcaaagttttattaaaaaccaagtctctgcgcaagacaaacaaagaccggtgttacagaaggtacaaactaaaggctccgtatataggcggaacatccg 30235845  T
Q  187 aaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 236  Q
    |||||||||| |||||||||||||||| ||||||||| ||| ||||||||    
T  30235846 aaaacaaacaccaacaaagacacccttgcgatcaacacccaaaaggacaa 30235895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 83 - 223
Target Start/End: Original strand, 5214932 - 5215072
Alignment:
Q  83 gaattagcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaagacgacgtatataggcggaaca 182  Q
    |||| ||||||||||||||||||| ||  || ||||| |||||||||||||||    |||||||||||||||||||||| || |||||||||||| ||||    
T  5214932 gaatcagcaaaattttattaaaaatcagatccctgcataagacgaacagagaccgatgttacagaaagtacaaactaaggcgccgtatataggcgaaaca 5215031  T
Q  183 cccgaaaacaaacatcaacaaagacacccttacgatcaaca 223  Q
    |||||||||||||   ||||||||||||| |||||||||||    
T  5215032 cccgaaaacaaactctaacaaagacacccctacgatcaaca 5215072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 88 - 203
Target Start/End: Complemental strand, 35062910 - 35062795
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaagacgacgtatataggcggaacacccga 187  Q
    ||||||||||||||||||| || ||||||||||||||| ||||||||   | |||||||||| |||||| ||| ||| ||||||||| | ||||||||||    
T  35062910 agcaaaattttattaaaaatcaggtctctgcacaagacaaacagagaacagtgttacagaaaatacaaattaatacgccgtatatagacagaacacccga 35062811  T
Q  188 aaacaaacatcaacaa 203  Q
    ||||||||| ||||||    
T  35062810 aaacaaacaccaacaa 35062795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 90 - 203
Target Start/End: Complemental strand, 10552717 - 10552604
Alignment:
Q  90 caaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaa 189  Q
    |||||||||||||||||||| ||||||||||||||||||||||||   |  ||| | | ||||| ||||||  || ||||||||||||||||| ||||||    
T  10552717 caaaattttattaaaaaccatgtctctgcacaagacgaacagagaatggtattagaaagagtaccaactaaagcgccgtatataggcggaacatccgaaa 10552618  T
Q  190 acaaacatcaacaa 203  Q
    ||||||| ||||||    
T  10552617 acaaacaccaacaa 10552604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 233
Target Start/End: Original strand, 32945331 - 32945469
Alignment:
Q  91 aaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaa-gacgacgtatataggcggaacacccgaaa 189  Q
    ||||||||||||||| | | || ||||||||||||| |||||||     |||||| || ||||||||||| || |  |||||||||||||||||||||||    
T  32945331 aaaattttattaaaa-ctaggtttctgcacaagacggacagagattgatgttacataaggtacaaactaaagatgttgtatataggcggaacacccgaaa 32945429  T
Q  190 acaaacatcaacaaagacacccttacgatcaacaaccataagga 233  Q
    |||||    | | ||||||||||| |||||||||  ||||||||    
T  32945430 acaaa----acctaagacacccttgcgatcaacactcataagga 32945469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 25184755 - 25184852
Alignment:
Q  92 aaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaact-aagacgacgtatataggcggaacacccgaa 188  Q
    ||||||||||||||||||| || || | |||||| || ||||||  | | | |||| |||||||||| || ||| |||||||||| ||||||||||||    
T  25184755 aaattttattaaaaaccaaatccctactcaagacaaaaagagaccggtgattcagagagtacaaactaaaaacgtcgtatataggtggaacacccgaa 25184852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 2e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 83 - 236
Target Start/End: Complemental strand, 9350168 - 9350015
Alignment:
Q  83 gaattagcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaagacgacgtatataggcggaaca 182  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||   | |||||| ||||||||||| ||| || |||||||||||||||||    
T  9350168 gaatcagcaaaattttattaaaaaccaggtctctgcacaagacgaacagagatcggtgttacaaaaagtacaaaccaaggcgccgtatataggcggaaca 9350069  T
Q  183 cccgaaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 236  Q
    || | ||| || || |||||||||||||| | | ||||||  ||||||||||||    
T  9350068 cctggaaaaaatcaccaacaaagacacccctgcaatcaacccccataaggacaa 9350015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 38486016 - 38485900
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaagacgacgtatataggcggaacacccga 187  Q
    ||||||||||||||||||| || |||||||| ||||||||||||||||  | ||||||||||||| |||||||| || |||| |||||||||||||||||    
T  38486016 agcaaaattttattaaaaatcaggtctctgctcaagacgaacagagactggtgttacagaaagtataaactaaggcgtcgtaaataggcggaacacccga 38485917  T
Q  188 aaacaaacatcaacaaa 204  Q
    ||||||||| |||||||    
T  38485916 aaacaaacaccaacaaa 38485900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 28534138 - 28534181
Alignment:
Q  92 aaattttattaaaaaccaagtctctgcacaagacgaacagagac 135  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||||    
T  28534138 aaattttattaaaaaccaaatctttgctcaagacgaacagagac 28534181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 135
Target Start/End: Original strand, 47456707 - 47456750
Alignment:
Q  92 aaattttattaaaaaccaagtctctgcacaagacgaacagagac 135  Q
    ||||||||||||||||||  ||||||| ||||||||||||||||    
T  47456707 aaattttattaaaaaccagatctctgctcaagacgaacagagac 47456750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 48058302 - 48058349
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagac 135  Q
    ||||||||||||||||||||||  ||||||| |||||| |||||||||    
T  48058302 agcaaaattttattaaaaaccatatctctgctcaagacaaacagagac 48058349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 31722121 - 31721998
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaagacgacgtatataggcggaacacccga 187  Q
    ||||||||||||||||||| || |||| ||||||||||||||||||||    |||||||||||||||||||||| || ||||||||| ||||||||||||    
T  31722121 agcaaaattttattaaaaatcaggtctttgcacaagacgaacagagaccgatgttacagaaagtacaaactaaggcgccgtatatagacggaacacccga 31722022  T
Q  188 aaacaaacatcaacaaagacaccc 211  Q
    |||||||||  ||||||| |||||    
T  31722021 aaacaaacactaacaaaggcaccc 31721998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 31742615 - 31742466
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaa-gacgacgtatataggcggaacacccg 186  Q
    |||||||||||||||||||||   || |||||||||||||||||||||  | ||||||  |||||||||| || | || |||||||||||||||||||||    
T  31742615 agcaaaattttattaaaaacctgatccctgcacaagacgaacagagaccggtgttacaagaagtacaaacaaaaggcgccgtatataggcggaacacccg 31742516  T
Q  187 aaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 236  Q
    |||||||||| |  ||||||| ||||| ||||||| | ||||||||||||    
T  31742515 aaaacaaacacctgcaaagactcccttgcgatcaaaacccataaggacaa 31742466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 96 - 236
Target Start/End: Complemental strand, 24436270 - 24436130
Alignment:
Q  96 tttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaacaaac 195  Q
    ||||||||||| || |||||||||||||||||| | ||||  | ||||  ||||||||||||||||||| | ||||||| ||||||| ||||||||||||    
T  24436270 tttattaaaaatcaggtctctgcacaagacgaataaagaccggtgttatggaaagtacaaactaagacgtcatatatagtcggaacatccgaaaacaaac 24436171  T
Q  196 atcaacaaagacacccttacgatcaacaaccataaggacaa 236  Q
    |  ||||||||||| | |||||||||||  |||||||||||    
T  24436170 actaacaaagacactcctacgatcaacactcataaggacaa 24436130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 88 - 196
Target Start/End: Complemental strand, 36979363 - 36979255
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaagacgacgtatataggcggaacacccga 187  Q
    |||||||| |||||||||  || |||||||||||||||||||||||||  | |||| ||||| || ||||||||  | |||||||| ||||||| ||||     
T  36979363 agcaaaatattattaaaagtcaggtctctgcacaagacgaacagagaccggtgttaaagaaaatataaactaaggtgtcgtatatatgcggaacgcccgg 36979264  T
Q  188 aaacaaaca 196  Q
    |||||||||    
T  36979263 aaacaaaca 36979255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 24071970 - 24072014
Alignment:
Q  166 cgtatataggcggaacacccgaaaacaaacatcaacaaagacacc 210  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||    
T  24071970 cgtatataggcggaacacccgaaaataaacatcataaaagacacc 24072014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 30097721 - 30097675
Alignment:
Q  151 tacaaactaa-gacgacgtatataggcggaacacccgaaaacaaaca 196  Q
    |||||||||| |||| ||||||||||||||||||||||||| |||||    
T  30097721 tacaaactaaagacgccgtatataggcggaacacccgaaaataaaca 30097675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 9e-29; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 1652506 - 1652654
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaact-aagacgacgtatataggcggaacacccg 186  Q
    |||||||||||||||||||  | ||||||||||||||| |||||||||    || |||||||||||||||| ||| || |||||||||||||||||||||    
T  1652506 agcaaaattttattaaaaattaggtctctgcacaagacaaacagagaccgatgtcacagaaagtacaaactaaaggcgtcgtatataggcggaacacccg 1652605  T
Q  187 aaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 236  Q
     ||| ||||| | |||||||||||||| |||||||||  |||||||||||    
T  1652606 -aaataaacacccacaaagacacccttgcgatcaacactcataaggacaa 1652654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 7966698 - 7966843
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaagacgacgtatataggcggaacacccga 187  Q
    ||||||||||||||||||| || |||||  ||||| |||||||||||   | ||||||||||||||||  ||||| | ||||||||| ||||||||||||    
T  7966698 agcaaaattttattaaaaatcaggtctc--cacaatacgaacagagatccgtgttacagaaagtacaat-taagatgccgtatatagacggaacacccga 7966794  T
Q  188 aaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 236  Q
    |||||||||  |||||||||||| || ||||| ||| |||||| |||||    
T  7966795 aaacaaacacaaacaaagacacctttgcgatccacacccataaagacaa 7966843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 92 - 208
Target Start/End: Original strand, 30935011 - 30935127
Alignment:
Q  92 aaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaac 191  Q
    |||||| |||||||| || ||||||| |||||||||||||||||  |  |||| |||| |||||||||||  | |||||||| ||| |||||||||||||    
T  30935011 aaatttaattaaaaatcaggtctctgtacaagacgaacagagaccggtcttactgaaaatacaaactaaggtgtcgtatataagcgaaacacccgaaaac 30935110  T
Q  192 aaacatcaacaaagaca 208  Q
    ||||| |||||||||||    
T  30935111 aaacaccaacaaagaca 30935127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 1e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 83 - 233
Target Start/End: Original strand, 6173842 - 6173993
Alignment:
Q  83 gaattagcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaact-aagacgacgtatataggcggaac 181  Q
    |||| ||||||||||||||||||| ||  |||||||||||||||||| |||||  | ||||| ||||||||||||| |||||  |||||||||| |||||    
T  6173842 gaatcagcaaaattttattaaaaatcagatctctgcacaagacgaactgagaccagtgttacggaaagtacaaactaaagacatcgtatataggtggaac 6173941  T
Q  182 acccgaaaacaaacatcaacaaagacacccttacgatcaacaaccataagga 233  Q
    |||| |||||||||| ||| | |||||||| | |||||| || |||||||||    
T  6173942 acccaaaaacaaacaccaaaagagacacccctgcgatcagcacccataagga 6173993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 31902042 - 31902190
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaagacgacgtatataggcggaacacccga 187  Q
    |||||||||||||||||||| | |||||||| ||||||||||||||||  | |||||||||||||||||  ||  || ||||||||||  ||||||||||    
T  31902042 agcaaaattttattaaaaacgaggtctctgcccaagacgaacagagaccggtgttacagaaagtacaaatcaaagcgccgtatataggtagaacacccga 31902141  T
Q  188 aaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 236  Q
    |||| |||| |||| ||| || || | ||||||||| | ||||||||||    
T  31902142 aaactaacaccaaccaaggcaaccctgcgatcaacaccaataaggacaa 31902190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 91 - 212
Target Start/End: Complemental strand, 9926653 - 9926534
Alignment:
Q  91 aaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaa 190  Q
    ||||||||||||||||| | |||||||||||||||||||||||||  | |||||| |||||||||| |||| |  ||||||||| |||||||| ||||||    
T  9926653 aaaattttattaaaaactaggtctctgcacaagacgaacagagac-ggtgttacaaaaagtacaaa-taaggctccgtatatagacggaacactcgaaaa 9926556  T
Q  191 caaacatcaacaaagacaccct 212  Q
     ||||| ||||||| |||||||    
T  9926555 taaacaccaacaaatacaccct 9926534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 140 - 236
Target Start/End: Complemental strand, 18681477 - 18681381
Alignment:
Q  140 gttacagaaagtacaaactaagacgacgtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 236  Q
    ||||||||||||||||||||||  | ||||||||||||||||||||||||||||| |  |||||||| |||  | | ||||||| ||||||| ||||    
T  18681477 gttacagaaagtacaaactaaggtgtcgtatataggcggaacacccgaaaacaaatactaacaaagaaacctctgcaatcaacacccataagaacaa 18681381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 915069 - 915217
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaa-gacgacgtatataggcggaacacccg 186  Q
    |||||||||||||||| ||| | |||||| ||||||| |||||||||   | |||||| ||||| || | ||| |||  || ||||||  ||||||||||    
T  915069 agcaaaattttattaataactaggtctctacacaagatgaacagagatcggtgttacaaaaagtgcacattaaagacaccgcatatagttggaacacccg 915168  T
Q  187 aaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 236  Q
    ||||||||||  ||||||||||||| |||| ||| || ||||||||||||    
T  915169 aaaacaaacactaacaaagacacccctacg-tcaccacccataaggacaa 915217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 92 - 195
Target Start/End: Original strand, 22884747 - 22884852
Alignment:
Q  92 aaattttatt-aaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaa-gacgacgtatataggcggaacacccgaaa 189  Q
    |||||||||| ||||||||| ||||||| ||||||||||| ||||   || || ||| | |||||||||| | || ||||||||||||||||||||||||    
T  22884747 aaattttatttaaaaaccaaatctctgctcaagacgaacaaagaccgacgatatagagaatacaaactaaaggcgtcgtatataggcggaacacccgaaa 22884846  T
Q  190 acaaac 195  Q
    | ||||    
T  22884847 ataaac 22884852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 29043993 - 29044049
Alignment:
Q  167 gtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaaca 223  Q
    |||||||||||||||||| ||||||||| | |||||||||||||| | |||||||||    
T  29043993 gtatataggcggaacacctgaaaacaaaaaccaacaaagacacccctgcgatcaaca 29044049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 190
Target Start/End: Original strand, 33788259 - 33788358
Alignment:
Q  92 aaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaact-aagacgacgtatataggcggaacacccgaaaa 190  Q
    |||||||||| |||||||| |||||||  |||||||||||||||  | | ||| || | |||||||| ||| || |||||||| ||||||||||||||||    
T  33788259 aaattttatttaaaaccaaatctctgctaaagacgaacagagaccggtgataccgagaatacaaactaaaggcgccgtatatatgcggaacacccgaaaa 33788358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 167 - 196
Target Start/End: Original strand, 24165886 - 24165915
Alignment:
Q  167 gtatataggcggaacacccgaaaacaaaca 196  Q
    ||||||||||||||||||||||||||||||    
T  24165886 gtatataggcggaacacccgaaaacaaaca 24165915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 5e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 88 - 223
Target Start/End: Complemental strand, 27775045 - 27774910
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaagacgacgtatataggcggaacacccga 187  Q
    ||||||||||||||||||| ||  ||| ||||  |||| |||| ||||  | | |||| ||||||||||||||| || |||||||||  |||||| || |    
T  27775045 agcaaaattttattaaaaatcagatctttgcatgagacaaacatagaccggtgatacaaaaagtacaaactaaggcgtcgtatatagatggaacatccaa 27774946  T
Q  188 aaacaaacatcaacaaagacacccttacgatcaaca 223  Q
    ||||||||| |||||||||||| | |||||||||||    
T  27774945 aaacaaacaccaacaaagacactcctacgatcaaca 27774910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 12794568 - 12794419
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaa-gacgacgtatataggcggaacacccg 186  Q
    |||||||||||||||||||  |  |||||||| |||| ||||||||||    |||  |||| ||||||||||| | || ||||||||| ||||||| |||    
T  12794568 agcaaaattttattaaaaataagatctctgcataagatgaacagagaccgatgttttagaaggtacaaactaaaggcgccgtatatagacggaacatccg 12794469  T
Q  187 aaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 236  Q
    ||||| |||| ||||||||||||   | ||||||||| ||| ||||||||    
T  12794468 aaaacgaacaccaacaaagacacatctgcgatcaacacccaaaaggacaa 12794419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 6946878 - 6946949
Alignment:
Q  166 cgtatataggcggaacacccgaaaacaaa-catcaacaaagacacccttacgatcaacaaccataaggacaa 236  Q
    |||||||||  ||||||| |||||||||| || |||||||||||||||| ||||||||| ||||||||||||    
T  6946878 cgtatatagatggaacactcgaaaacaaaacaccaacaaagacacccttgcgatcaacacccataaggacaa 6946949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 88 - 222
Target Start/End: Complemental strand, 9224384 - 9224249
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaac-taagacgacgtatataggcggaacacccg 186  Q
    |||||||||||||||||||| || || ||| |||||||||||||||||  |   || ||||||||||| |  |||  | |||||||||  ||||||||||    
T  9224384 agcaaaattttattaaaaactaaatccctgtacaagacgaacagagactggtaataaagaaagtacaaccaaaaggtgtcgtatatagaaggaacacccg 9224285  T
Q  187 aaaacaaacatcaacaaagacacccttacgatcaac 222  Q
    |||| ||||| ||||||||||| || | ||||||||    
T  9224284 aaaataaacaccaacaaagacatccctgcgatcaac 9224249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 211
Target Start/End: Original strand, 26215652 - 26215776
Alignment:
Q  88 agcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaact-aagacgacgtatataggcggaacacccg 186  Q
    ||||||||||||||||||| || |||| ||||||||| ||||||||||    |||||||||| |||||| | ||| |   ||||||| ||||| |||| |    
T  26215652 agcaaaattttattaaaaaacaggtctatgcacaagatgaacagagaccaatgttacagaaaatacaaattaaaggcactgtatatatgcggaccacctg 26215751  T
Q  187 aaaacaaacatcaacaaagacaccc 211  Q
    |||||||||| ||| ||||| ||||    
T  26215752 aaaacaaacaccaataaagataccc 26215776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 17278171 - 17278215
Alignment:
Q  166 cgtatataggcggaacacccgaaaacaaacatcaacaaagacacc 210  Q
    ||||||||||||||||||||||||| ||||||||  |||||||||    
T  17278171 cgtatataggcggaacacccgaaaataaacatcataaaagacacc 17278215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 21265439 - 21265394
Alignment:
Q  90 caaaattttattaaaaaccaagtctctgcacaagacgaacagagac 135  Q
    ||||||||||||||||||||  || |||||||||| ||||||||||    
T  21265439 caaaattttattaaaaaccatatcgctgcacaagatgaacagagac 21265394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 83 - 194
Target Start/End: Complemental strand, 19432494 - 19432382
Alignment:
Q  83 gaattagcaaaattttattaaaaaccaagtctctgcacaagacgaacagagacatgcgttacagaaagtacaaac-taagacgacgtatataggcggaac 181  Q
    |||| ||||||||||||||||||| || |||| ||||||||||| ||||| ||  | ||||||||| ||||||||  ||| || ||||||||| ||||||    
T  19432494 gaatcagcaaaattttattaaaaaacaggtctttgcacaagacggacagataccagtgttacagaaggtacaaacaaaaggcgccgtatatagacggaac 19432395  T
Q  182 acccgaaaacaaa 194  Q
    | |||||||||||    
T  19432394 atccgaaaacaaa 19432382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 231
Target Start/End: Complemental strand, 35800894 - 35800749
Alignment:
Q  88 agcaaaattttattaaaaaccaag-tctctgcacaagacgaacagagacatgcgttacagaaagtacaaactaa-gacgacgtatataggcggaacaccc 185  Q
    |||||||||||||||||||  ||| |||||| |||||||||||||||||    |||| |||||||||||| ||| | ||  |||||||| |||||||||     
T  35800894 agcaaaattttattaaaaaataaggtctctgtacaagacgaacagagactgatgttaaagaaagtacaaaataacggcgctgtatatagacggaacaccg 35800795  T
Q  186 gaaaacaaacatcaacaaagacacccttacgatcaacaaccataag 231  Q
     |||||||||| |||| || | |||| | ||||||||| |||||||    
T  35800794 aaaaacaaacaccaacgaaaatacccatgcgatcaacacccataag 35800749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 43077339 - 43077282
Alignment:
Q  166 cgtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaaca 223  Q
    ||||||||||| ||||||| ||||| ||||| |||||||||||||| | |||||||||    
T  43077339 cgtatataggcagaacacctgaaaataaacaccaacaaagacacccctgcgatcaaca 43077282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 236
Target Start/End: Original strand, 43373801 - 43373870
Alignment:
Q  167 gtatataggcggaacacccgaaaacaaacatcaacaaagacacccttacgatcaacaaccataaggacaa 236  Q
    ||||||||||| ||||||||||||||||   |||||||||||||| |  ||||||||  |||||||||||    
T  43373801 gtatataggcgaaacacccgaaaacaaaacccaacaaagacacccatgtgatcaacacacataaggacaa 43373870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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