View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5625-Insertion-8 (Length: 603)

Name: NF5625-Insertion-8
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5625-Insertion-8
NF5625-Insertion-8
[»] chr3 (4 HSPs)
chr3 (208-460)||(1138366-1138618)
chr3 (507-601)||(1138665-1138759)
chr3 (40-156)||(1138206-1138320)
chr3 (275-316)||(28802764-28802805)
[»] chr4 (4 HSPs)
chr4 (40-124)||(51033683-51033767)
chr4 (278-316)||(207500-207538)
chr4 (275-312)||(47789196-47789233)
chr4 (557-585)||(51034024-51034052)
[»] chr2 (2 HSPs)
chr2 (275-312)||(3110531-3110568)
chr2 (279-316)||(28044709-28044746)
[»] chr1 (3 HSPs)
chr1 (275-316)||(6025961-6026002)
chr1 (277-312)||(1118941-1118976)
chr1 (275-320)||(26161596-26161641)
[»] chr5 (1 HSPs)
chr5 (281-313)||(28734169-28734201)
[»] chr7 (2 HSPs)
chr7 (278-321)||(32888960-32889003)
chr7 (277-313)||(7245942-7245978)
[»] chr6 (2 HSPs)
chr6 (277-311)||(2730831-2730865)
chr6 (276-313)||(26373115-26373152)


Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 208 - 460
Target Start/End: Original strand, 1138366 - 1138618
Alignment:
Q  208 tatcttgtgtgggtttttaatcccaaaatagaggtttgattaaattatactatgttacaatgctttagctatagccactatttgacaactctttgtacta 307  Q
    |||||| ||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1138366 tatcttttgtcggtttttaattccaaaatagaggtttgcttaaattatactatgttacaatgctttagctatagccactatttgacaactctttgtacta 1138465  T
Q  308 aatagcataccactcttgcagtggattatttaccttcatacagctacgacagagtggtcgatattgaaccaccgtcgtgatgtccccatctttcgttcac 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  1138466 aatagcataccactcttgcagtggattatttaccttcatacagctacgacagagtggtcgatattgaaccaccgtcatgatgtccccatctttcattcac 1138565  T
Q  408 acattagcttcaaaaaatgccattttcatttctccacattatttgtaacagac 460  Q
    | |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  1138566 agattagcttcaaaaaatgccattttcatttctccacattatttgtgacagac 1138618  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 507 - 601
Target Start/End: Original strand, 1138665 - 1138759
Alignment:
Q  507 caaacaaccaatcagaagaaaataaatgcaagcaaactgaagttttagtgtcgaagaagtaaacttggttctggaagttctgaagtgtttccatc 601  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1138665 caaacaaccaatcagaagaaaataaatgcaagcaaactgaagttttagtgtcgaagaagtaaacttggttctggaagttctgaagtgtttccatc 1138759  T

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Target: chr3; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 40 - 156
Target Start/End: Original strand, 1138206 - 1138320
Alignment:
Q  40 cctctccctctaaattctctctctcacccactcattttcaggaagtagcctccaagacatgccaactattggccttccactcatcatgtgcacacaacgc 139  Q
    ||||||||||||| || |||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||| ||| ||||  ||||||||    
T  1138206 cctctccctctaagttttctctctcacccactcatattcaggaagtggcctccaagacatgccaacaattggccttccacttatcctgtg--cacaacgc 1138303  T
Q  140 aacacctacaacatcat 156  Q
    |||||||||||||||||    
T  1138304 aacacctacaacatcat 1138320  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 28802764 - 28802805
Alignment:
Q  275 gctatagccactatttgacaactctttgtactaaatagcata 316  Q
    |||||||||||||||||||||| |||| || |||||||||||    
T  28802764 gctatagccactatttgacaacactttatattaaatagcata 28802805  T

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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 51033683 - 51033767
Alignment:
Q  40 cctctccctctaaattctctctctcacccactcattttcaggaagtagcctccaagacatgccaactattggccttccactcatc 124  Q
    |||||||||||| | | ||| |||||| ||||||| |||| ||||| ||||||||||||||||||||||||||||||||| ||||    
T  51033683 cctctccctctacaatttctatctcacacactcatattcatgaagtggcctccaagacatgccaactattggccttccacacatc 51033767  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 316
Target Start/End: Complemental strand, 207538 - 207500
Alignment:
Q  278 atagccactatttgacaactctttgtactaaatagcata 316  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  207538 atagccactatttgacaatactttgtactaaatagcata 207500  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 312
Target Start/End: Complemental strand, 47789233 - 47789196
Alignment:
Q  275 gctatagccactatttgacaactctttgtactaaatag 312  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  47789233 gctatagccactatttgacaacagtttgtactaaatag 47789196  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 557 - 585
Target Start/End: Original strand, 51034024 - 51034052
Alignment:
Q  557 tcgaagaagtaaacttggttctggaagtt 585  Q
    |||||||||||||||||||||||||||||    
T  51034024 tcgaagaagtaaacttggttctggaagtt 51034052  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 275 - 312
Target Start/End: Original strand, 3110531 - 3110568
Alignment:
Q  275 gctatagccactatttgacaactctttgtactaaatag 312  Q
    |||||||||||||||||||||| |||||||||||||||    
T  3110531 gctatagccactatttgacaacgctttgtactaaatag 3110568  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 316
Target Start/End: Original strand, 28044709 - 28044746
Alignment:
Q  279 tagccactatttgacaactctttgtactaaatagcata 316  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  28044709 tagccactatttgacaacactttgtactaaatcgcata 28044746  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 275 - 316
Target Start/End: Original strand, 6025961 - 6026002
Alignment:
Q  275 gctatagccactatttgacaactctttgtactaaatagcata 316  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  6025961 gctatagccactatttgacaacattttgtactaaatagcata 6026002  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 1118976 - 1118941
Alignment:
Q  277 tatagccactatttgacaactctttgtactaaatag 312  Q
    |||||||||||||||||||| |||||||||||||||    
T  1118976 tatagccactatttgacaacactttgtactaaatag 1118941  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 320
Target Start/End: Original strand, 26161596 - 26161641
Alignment:
Q  275 gctatagccactatttgacaactctttgtactaaatagcataccac 320  Q
    ||||||||  |||||||||||  |||||||||||||||||||||||    
T  26161596 gctatagctgctatttgacaatactttgtactaaatagcataccac 26161641  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 28734169 - 28734201
Alignment:
Q  281 gccactatttgacaactctttgtactaaatagc 313  Q
    |||||||||||||||||||||||||||||||||    
T  28734169 gccactatttgacaactctttgtactaaatagc 28734201  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 321
Target Start/End: Complemental strand, 32889003 - 32888960
Alignment:
Q  278 atagccactatttgacaactctttgtactaaatagcataccact 321  Q
    ||||||||||||||||||  ||||||||||||||||||| ||||    
T  32889003 atagccactatttgacaatactttgtactaaatagcatatcact 32888960  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 277 - 313
Target Start/End: Original strand, 7245942 - 7245978
Alignment:
Q  277 tatagccactatttgacaactctttgtactaaatagc 313  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  7245942 tatagccgctatttgacaacactttgtactaaatagc 7245978  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 277 - 311
Target Start/End: Original strand, 2730831 - 2730865
Alignment:
Q  277 tatagccactatttgacaactctttgtactaaata 311  Q
    |||||||||||||||||||| ||||||||||||||    
T  2730831 tatagccactatttgacaacactttgtactaaata 2730865  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 26373152 - 26373115
Alignment:
Q  276 ctatagccactatttgacaactctttgtactaaatagc 313  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  26373152 ctataaccactatttgacaacactttgtactaaatagc 26373115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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