View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5625_high_1 (Length: 967)
Name: NF5625_high_1
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5625_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 610 - 958
Target Start/End: Complemental strand, 23133054 - 23132706
Alignment:
| Q |
610 |
accgaaaagtcgtgcaaaagtagaagatggaagctacttcaattacacaattgttgaagggcttttgtgatactatgcaatggcactatgctgtcttttg |
709 |
Q |
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| T |
23133054 |
accgaaaagtcgtgcaaaagtagaagatggaagctacttcaattacacaattgttgaagggcttttgtgatactatgcaatggcactatgctgtcttttg |
23132955 |
T |
|
| Q |
710 |
gaagcttaatcacctttctccaatgtaagttttttgtccattgatttgcttatgtttctatcctcatatgctgcgtttcgtaggatagagttattgtctt |
809 |
Q |
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| T |
23132954 |
gaagcttaatcacctttctccgatgtaagttttttgtccattgatttgcttatgtttctatcctcatatgctgcatttcgtaggatagagttattgtctt |
23132855 |
T |
|
| Q |
810 |
tctattgaagtgacatcactaagatcgaatggatcaatagcatccgagtttgaattctgaccggagcaatctttggtcaaactttacttacctcctggtc |
909 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
23132854 |
tctattgaagtgacatcactaagatcgaatggatcagtagcatccgagtttgaattctgaccggagcaatctttggtcagactttactcacctcctggtc |
23132755 |
T |
|
| Q |
910 |
gaactgcagagggttaagaccaaaaatttaatgatgttccgagtataat |
958 |
Q |
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| T |
23132754 |
gaactgcagagggttaagaccaaaaatttaatgatgttccgagtataat |
23132706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 321
Target Start/End: Complemental strand, 23133610 - 23133312
Alignment:
| Q |
18 |
attttgttcatgttttaaagtgtaatttttgtcaaaattacatatacatatcgtgattctgccaaactcaccatcaatcgatttcaggcatgcacttcat |
117 |
Q |
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| T |
23133610 |
attttgttgatgttttaaagtgtaatttttgccaaaattacatatacatatcgtgattctgccaaactcaccatcaat-----tcaagcatgcacttagt |
23133516 |
T |
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| Q |
118 |
gtgtttctttctttgttttagagttgacttatattcattttctgtagctgtaaaattttcctagcaatcaaacaggctccttgaacttgattcttaacat |
217 |
Q |
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|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
23133515 |
gtagttctttgtttgttttagagttgacttatattcattttctgtagctgtaaaattttccttgcaatcaaataggctccttgaacttgattcttaacat |
23133416 |
T |
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| Q |
218 |
aagttatttgatttgtttctgcaggaattgttcttctagattaagctactttgttgcagaattcttagtttttgtgcttattttgttaaattgctttctt |
317 |
Q |
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|| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| ||||| ||||||| |
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| T |
23133415 |
aaattctttgatttgtttctgcaggaagtgttcttctagattaagctactttgttgcagaattcatagtttttgtgcctattttgtaaaattactttctt |
23133316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 350 - 549
Target Start/End: Complemental strand, 23133314 - 23133115
Alignment:
| Q |
350 |
gagaatagaaactgtaagcacttctggtcatcattgatttcggcagcacggctcaacaaatttactttgttataattttttgttggaagaaccaagttat |
449 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23133314 |
gagaatggaaactgtgagcacttctggtcatcattgatttcggcagcacggctcaacaaatttactttgttataattttttgttggaagaaccaagttat |
23133215 |
T |
|
| Q |
450 |
ggttattttgttgctcataagtacaatagggcctatgataaagaaaagagttggtttaagaattaaacaagctggtagaggttcatacagaggtagctag |
549 |
Q |
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| T |
23133214 |
ggttattttgttgctcataagtacaatagggcctatgataaagaaaagagttggtttaagaattaaacaagctggtagaggttcatacagaggtagctag |
23133115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 265; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 139 - 535
Target Start/End: Original strand, 22362878 - 22363272
Alignment:
| Q |
139 |
agttgacttatattcattttctgtagctgtaaaattttcctagcaatcaaacaggctccttgaacttgattcttaacataagttatttgatttgtttctg |
238 |
Q |
| |
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||||||||||||||||||| || ||| ||| ||||||||||| |||||||||||| |||||||| |||||||||||||||| || ||||||||||||||| |
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| T |
22362878 |
agttgacttatattcattt-ctttagttgtgaaattttcctaacaatcaaacagggtccttgaaattgattcttaacataaattctttgatttgtttctg |
22362976 |
T |
|
| Q |
239 |
caggaattgttcttctagattaagctactttgttgcagaattcttagtttttgtgcttattttgttaaattgctttcttggagtttggctgcaagttgtt |
338 |
Q |
| |
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||||| ||||||| ||||| |||||| | ||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22362977 |
caggatgtgttcttatagatacagctacgcttttgcagaattcatagtttttgttcttattttattaaattgctttcttggagtttggctgcaagttgtt |
22363076 |
T |
|
| Q |
339 |
aaaatgactcagagaatagaaactgtaagcacttctggtcatcattgatttcggcagcacggctcaacaaatttactttgttataattttttgttggaag |
438 |
Q |
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|||||| || ||||||| ||| |||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22363077 |
aaaatggctaagagaatggaa-ctgtgagcacttctggtaatcattgatttcgacagcacggctcaacaaatttactttgttataattttttgttggaag |
22363175 |
T |
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| Q |
439 |
aaccaagttatggttattttgttgctcataagtacaatagggcctatgataaagaaaagagttggtttaagaattaaacaagctggtagaggttcat |
535 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
22363176 |
aaccaagttatggttattttgttgttcataagtacaatagggcctatgataaagaaaatagtttatttaagaattaaacaagctggtagaggttcat |
22363272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 142; Significance: 5e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 5e-74
Query Start/End: Original strand, 349 - 537
Target Start/End: Complemental strand, 14106016 - 14105827
Alignment:
| Q |
349 |
agagaatagaaactgtaagcacttctggtcatcattgatttcggcagcacggctcaacaaatttactttgttat-aattttttgttggaagaaccaagtt |
447 |
Q |
| |
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||||||| |||||||| |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
14106016 |
agagaatggaaactgtgagcacttctggtaatcattgatttcgacagcacggctcaacaaatttactttgttattaattttttgttggaagattcaagtt |
14105917 |
T |
|
| Q |
448 |
atggttattttgttgctcataagtacaatagggcctatgataaagaaaagagttggtttaagaattaaacaagctggtagaggttcatac |
537 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||| |
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| T |
14105916 |
atggttattttgttgctcataagtacaatagggcctatgataaagaaaatagtttatttaagaattaaacaagctagtagaggttcatac |
14105827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 190 - 281
Target Start/End: Complemental strand, 14106111 - 14106020
Alignment:
| Q |
190 |
caggctccttgaacttgattcttaacataagttatttgatttgtttctgcaggaattgttcttctagattaagctactttgttgcagaattc |
281 |
Q |
| |
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||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||||| |||| || | ||||||||||| |
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| T |
14106111 |
caggctccttgaaattgattcttaacataagttctttgatttgtttctgaaggaagtgttcttatagatacagctgctcttttgcagaattc |
14106020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 615 - 685
Target Start/End: Complemental strand, 34859912 - 34859842
Alignment:
| Q |
615 |
aaagtcgtgcaaaagtagaagatggaagctacttcaattacacaattgttgaagggcttttgtgatactat |
685 |
Q |
| |
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|||||| || ||||||||||||||||||| |||||||| |||||| |||||||||| |||||||||||||| |
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| T |
34859912 |
aaagtcctggaaaagtagaagatggaagccacttcaataacacaaatgttgaagggtttttgtgatactat |
34859842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 17641530 - 17641592
Alignment:
| Q |
139 |
agttgacttatattcattttctgtagctgtaaaattttcctagcaatcaaacaggctccttgaa |
202 |
Q |
| |
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||||||||||||||||||| || ||| ||| ||||||||||| |||||||||||| |||||||| |
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| T |
17641530 |
agttgacttatattcattt-ctttagttgtgaaattttcctaacaatcaaacagggtccttgaa |
17641592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 876 - 914
Target Start/End: Original strand, 39634358 - 39634396
Alignment:
| Q |
876 |
caatctttggtcaaactttacttacctcctggtcgaact |
914 |
Q |
| |
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|||| ||||||||||||||||||||||| |||||||||| |
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| T |
39634358 |
caatttttggtcaaactttacttacctcttggtcgaact |
39634396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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