View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5625_high_14 (Length: 348)
Name: NF5625_high_14
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5625_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 9629840 - 9629502
Alignment:
| Q |
1 |
gccaagtttatgattgtaacacttcctttagaatcatcacaagtgatacctctccatgaacatggtgtttgtgttgaactagagttgttaatgatccatg |
100 |
Q |
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| T |
9629840 |
gccaagtttatgattgtaacacttcctttagaatcatcacaagtgatacctctccataaacatggtgtttgtgttgaactagagttgttaatgatccatg |
9629741 |
T |
|
| Q |
101 |
aatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtgtcagtcctgaagtgatttggcatagagctagcaacaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9629740 |
aatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtgtcagtcctgaagtgatttggcatagagctagcaacaaaga |
9629641 |
T |
|
| Q |
201 |
aaccaacaaagtagcttgaattggaaatgtatgcatatggttaaggttggacattgtgtgatgatcacaaaattctgaaaatggtttctttaattgtttt |
300 |
Q |
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| T |
9629640 |
aaccaacaaagtagcttgaattggaaatgtatgcatatggttaaggttggacattgtgtgatgatcacaaaattctgaaaatggtttctttaattgtttt |
9629541 |
T |
|
| Q |
301 |
atttgttcaatgaagtgttgttgtatttatgagtataat |
339 |
Q |
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| T |
9629540 |
atttgttcaatgaagtgttgttgtatttatgattataat |
9629502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 13607406 - 13607744
Alignment:
| Q |
1 |
gccaagtttatgattgtaacacttcctttagaatcatcacaagtgatacctctccatgaacatggtgtttgtgttgaactagagttgttaatgatccatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13607406 |
gccaagtttatgattgtaacacttcctttagaatcatcacaagtgatacctctccataaacatggtgtttgtgttgaactagagttgttaatgatccatg |
13607505 |
T |
|
| Q |
101 |
aatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtgtcagtcctgaagtgatttggcatagagctagcaacaaaga |
200 |
Q |
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| T |
13607506 |
aatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtgtcagtcctgaagtgatttggcatagagctagcaacaaaga |
13607605 |
T |
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| Q |
201 |
aaccaacaaagtagcttgaattggaaatgtatgcatatggttaaggttggacattgtgtgatgatcacaaaattctgaaaatggtttctttaattgtttt |
300 |
Q |
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| T |
13607606 |
aaccaacaaagtagcttgaattggaaatgtatgcatatggttaaggttggacattgtgtgatgatcacaaaattctgaaaatggtttctttaattgtttt |
13607705 |
T |
|
| Q |
301 |
atttgttcaatgaagtgttgttgtatttatgagtataat |
339 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |
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| T |
13607706 |
atttgttcaatgaagtgttgttgtatttatgattataat |
13607744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 13902599 - 13902279
Alignment:
| Q |
1 |
gccaagtttatgattgtaacacttcctttagaatcatcacaagtgatacctctccatgaacatggtgtttgtgttgaactagagttgttaatgatccatg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13902599 |
gccaagtttatgattgtaacacttcctttagaatcatcacaagtgatacctctccataaacatggtgtttgtgttgaactagagttgttaatgatccatg |
13902500 |
T |
|
| Q |
101 |
aatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtgtcagtcctgaagtgatttggcatagagctagcaacaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13902499 |
aatcaagaattggttgttgagggagactttgtttccactttaacaaggcttcaaattgtgtcagccctgaagtgatttggcatagagctagcaacaaaga |
13902400 |
T |
|
| Q |
201 |
aaccaacaaagtagcttgaattggaaatgtatgca------tatggttaaggttggacattgtgtgatgatcacaaaattctgaaaatggtttctttaat |
294 |
Q |
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|||||| | |||||||||||||||||||||||||| |||||||||||||||||||||| || |||| |||||| || ||||||| ||||| ||| |
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| T |
13902399 |
aaccaatacagtagcttgaattggaaatgtatgcatatgattatggttaaggttggacattgtttggtgattacaaaactcagaaaatgacttcttcaat |
13902300 |
T |
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| Q |
295 |
tgttttatttgttcaatgaag |
315 |
Q |
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|| ||||||| |||||||||| |
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| T |
13902299 |
tgctttatttattcaatgaag |
13902279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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