View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5625_high_16 (Length: 325)
Name: NF5625_high_16
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5625_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 32420458 - 32420132
Alignment:
| Q |
1 |
tatattgtatatgaacttgtaacaaaatggtgttaattacatttgaatgcaggggcactatgggcatctggaattggagcatcacttgtagcttattcac |
100 |
Q |
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| T |
32420458 |
tatattgtatatgaacttgtaacaaaatggtgttaattacatttgaatgcagggacactatgggcatctggaattggagcatcacttgtagcttattcac |
32420359 |
T |
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| Q |
101 |
gagttaaatctccaatgaagccaagtctaaggcttatccatgctaggtaaaattttcactacaa-----------------tattttgttttccatttca |
183 |
Q |
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| T |
32420358 |
gagttaaatctccaatgaagccaagtctaagacttatccatgctaggtaaaattttcactacaatcttcgataataatttttattttgttttccatttca |
32420259 |
T |
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| Q |
184 |
agtgctgaaatgtgtgttgtatcgaataaagtgtaacaaatgttttggtttgaaggatgcatgcacaggcgctaactctagcagtgttgtcgggtgcagc |
283 |
Q |
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| T |
32420258 |
agtgc-----------ttgtatcgaataaagtgtaacgaatgttttggtttgaaggatgcatgcacaggcgctaactctagcagtgttgtcgggtgcggc |
32420170 |
T |
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| Q |
284 |
tgcttatcactattatgagaatcgtgatgatgtccatc |
321 |
Q |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
32420169 |
tgcttatcactattatgagaatcgtgatgatgttcatc |
32420132 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 149
Target Start/End: Complemental strand, 36176355 - 36176321
Alignment:
| Q |
115 |
atgaagccaagtctaaggcttatccatgctaggta |
149 |
Q |
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| T |
36176355 |
atgaagccaagtcttaggcttatccatgctaggta |
36176321 |
T |
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