View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5625_high_18 (Length: 294)

Name: NF5625_high_18
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5625_high_18
NF5625_high_18
[»] chr1 (6 HSPs)
chr1 (20-294)||(30713872-30714138)
chr1 (5-152)||(40901437-40901584)
chr1 (5-152)||(49827024-49827169)
chr1 (59-152)||(18889970-18890061)
chr1 (49-112)||(43049240-43049304)
chr1 (85-152)||(49751054-49751122)
[»] chr8 (5 HSPs)
chr8 (5-152)||(39192518-39192662)
chr8 (5-152)||(42884390-42884532)
chr8 (40-152)||(14755519-14755632)
chr8 (85-139)||(36042111-36042165)
chr8 (40-121)||(14365442-14365522)
[»] chr7 (5 HSPs)
chr7 (43-152)||(34790400-34790507)
chr7 (40-146)||(34590261-34590366)
chr7 (5-137)||(8806215-8806348)
chr7 (5-70)||(25530002-25530068)
chr7 (48-120)||(23094934-23095009)
[»] chr4 (8 HSPs)
chr4 (7-154)||(49867419-49867569)
chr4 (5-152)||(53959019-53959172)
chr4 (34-152)||(29134657-29134774)
chr4 (5-83)||(55812429-55812507)
chr4 (85-152)||(29444934-29445004)
chr4 (5-151)||(29441287-29441441)
chr4 (5-78)||(2467958-2468032)
chr4 (7-56)||(19410900-19410948)
[»] chr5 (3 HSPs)
chr5 (5-152)||(36571039-36571187)
chr5 (5-119)||(10939973-10940087)
chr5 (25-152)||(11088293-11088419)
[»] chr2 (10 HSPs)
chr2 (8-152)||(18647770-18647914)
chr2 (45-152)||(24401342-24401448)
chr2 (5-114)||(31079897-31080005)
chr2 (85-152)||(3525295-3525360)
chr2 (23-137)||(19983115-19983230)
chr2 (40-120)||(18832728-18832810)
chr2 (5-56)||(27577970-27578020)
chr2 (53-152)||(29148611-29148708)
chr2 (27-116)||(30506516-30506604)
chr2 (40-145)||(39095972-39096076)
[»] scaffold1206 (1 HSPs)
scaffold1206 (22-152)||(2132-2262)
[»] chr3 (4 HSPs)
chr3 (5-152)||(6786142-6786286)
chr3 (5-131)||(31295262-31295401)
chr3 (3-56)||(32739793-32739848)
chr3 (40-152)||(33091812-33091922)
[»] chr6 (3 HSPs)
chr6 (34-149)||(3011300-3011413)
chr6 (5-122)||(577591-577706)
chr6 (5-152)||(4149249-4149388)
[»] scaffold0057 (1 HSPs)
scaffold0057 (40-152)||(62613-62725)
[»] scaffold0148 (1 HSPs)
scaffold0148 (40-145)||(11480-11585)


Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 294
Target Start/End: Complemental strand, 30714138 - 30713872
Alignment:
Q  20 ttttttagagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaatcatgttttaatatttgaatctcttacacttgagttcctt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30714138 ttttttagagatttaaaaataaaatctaaagctatttcagtttatttaataacataaaaatcatgttttaagatttgaatctcttacacttgagttcctt 30714039  T
Q  120 gtagttagaaa--ataaaaatagattttgaaaaagatccagtcatgtaattttgtggatgttttataatttcttgtaactgtgctccttaatgtttaagc 217  Q
    ||| |||||||  | ||||| |||||||| ||||          | || || |||||||||||||||||||| ||||||||||||||||||| |||||||    
T  30714038 gtatttagaaagaaaaaaaaaagattttggaaaa----------tctacttatgtggatgttttataatttcgtgtaactgtgctccttaatttttaagc 30713949  T
Q  218 aaaatattttacataaaataatcacgaaaactataagctggtttttgctagatccacagacgaatatagtggttcac 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30713948 aaaatattttacataaaataatcacgaaaactataagctggtttttgctagatccacagacgaatatagtggttcac 30713872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 40901584 - 40901437
Alignment:
Q  5 aagaatctagagata-ttttttagagattta-aaaataaaatctaaagctatttcagtttatttactaacataaaaatca-tgttttaatatttgaatct 101  Q
    ||||||||||||||  ||||||| ||||||  |||| ||||| |||||||||||  ||||  |||||| ||||||||||| | |||||  ||||||| ||    
T  40901584 aagaatctagagattcttttttaaagatttttaaaaaaaaatttaaagctatttatgtttgcttactatcataaaaatcatttttttagaatttgaagct 40901485  T
Q  102 cttacacttgagttccttgtagttagaaaataaaaatagattttgaaaaag 152  Q
    |||| |||||||||| ||||  ||||||   ||||||||||||||||||||    
T  40901484 cttatacttgagttcattgtgtttagaa---aaaaatagattttgaaaaag 40901437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 49827024 - 49827169
Alignment:
Q  5 aagaatctagagatattttttagagatttaaaa-ataaaatctaaagctatttcagtttatttactaacataaaaat-catgttttaatatttgaatctc 102  Q
    ||||||||| |||| ||||||||||||||   | | |||||||||||||||||| |||| |||||||||||||   |   | |||||| |||||||  ||    
T  49827024 aagaatctaaagattttttttagagattttttagaaaaaatctaaagctatttctgtttgtttactaacataattttattttttttaagatttgaa-gtc 49827122  T
Q  103 ttacacttgagttccttgtagttagaaaataaaaatagattttgaaaaag 152  Q
    |||||||||||||||||||| ||||||   |||||||||||||| |||||    
T  49827123 ttacacttgagttccttgtatttagaa---aaaaatagattttggaaaag 49827169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 18890061 - 18889970
Alignment:
Q  59 gtttatttactaacataaaaatcatgtt-ttaatatttgaatctcttacacttgagttccttgtagttagaaaataaaaatagattttgaaaaag 152  Q
    |||| ||||||||||||||||| ||  | |||| ||||||| | ||||||||| ||||||||||| ||||||   ||||||||||||||||||||    
T  18890061 gtttgtttactaacataaaaattattatgttaagatttgaagcacttacacttaagttccttgtatttagaa---aaaaatagattttgaaaaag 18889970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 112
Target Start/End: Complemental strand, 43049304 - 43049240
Alignment:
Q  49 agctatttcagtttatttactaacataaaaatca-tgttttaatatttgaatctcttacacttga 112  Q
    ||||||||| |||| || |||| ||||||||||| | |||||| ||||||| |||||||||||||    
T  43049304 agctatttctgttttttaactatcataaaaatcacttttttaagatttgaagctcttacacttga 43049240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 49751054 - 49751122
Alignment:
Q  85 ttttaatatttgaatctcttacacttgagttccttgtagttagaaaataa-aaatagattttgaaaaag 152  Q
    |||||| |||| ||||||||||| |||||||||||||  |||||||| || | ||| ||||||||||||    
T  49751054 ttttaagattttaatctcttacatttgagttccttgtttttagaaaaaaatatatatattttgaaaaag 49751122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 39192662 - 39192518
Alignment:
Q  5 aagaatctagagatattttttagagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaatca-tgttttaatatttgaatctct 103  Q
    |||||||||||||| ||||||||||||||  ||| ||||| |||||||||||| |||| ||||||| ||||||||||| | |||||| ||||||| ||||    
T  39192662 aagaatctagagattttttttagagatttttaaa-aaaatttaaagctatttctgtttgtttactatcataaaaatcaattttttaagatttgaagctct 39192564  T
Q  104 tacacttgagttccttgtagttagaaaataaaaatagattttgaaaaag 152  Q
    |||||||||||||||| |  ||||||   ||||||||||||||||||||    
T  39192563 tacacttgagttccttatgtttagaa---aaaaatagattttgaaaaag 39192518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 42884532 - 42884390
Alignment:
Q  5 aagaatctagagatattttttagagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaatcatgtttt-aatatttgaatctct 103  Q
    ||||||||||| || |||||||||||||| |||| | ||||| |||||||||  ||||  |||||| |||||||||||| |||| || ||||||| ||||    
T  42884532 aagaatctagatat-ttttttagagattttaaaa-ataatctgaagctatttttgtttgcttactatcataaaaatcatttttttaagatttgaaactct 42884435  T
Q  104 tacacttgagttccttgtagttagaaaataaaaatagattttgaaaaag 152  Q
    |||| |||||||||||||  |||||    ||||||||||||||||||||    
T  42884434 tacaattgagttccttgtttttaga----aaaaatagattttgaaaaag 42884390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 152
Target Start/End: Complemental strand, 14755632 - 14755519
Alignment:
Q  40 aaaatctaaagctatttcagtttatttactaacataaaaatcatgtttt---aatatttgaatctcttacacttgagttccttgtagttagaaaataaaa 136  Q
    ||||| |||| ||||||  |||| ||||||| || ||||||||| ||||   || |||||||  ||||||||||||||||||| |  |||||||  ||||    
T  14755632 aaaatataaaactatttatgtttgtttactatcacaaaaatcatttttttttaagatttgaagttcttacacttgagttccttatctttagaaa--aaaa 14755535  T
Q  137 atagattttgaaaaag 152  Q
    ||||||||||||||||    
T  14755534 atagattttgaaaaag 14755519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 139
Target Start/End: Original strand, 36042111 - 36042165
Alignment:
Q  85 ttttaatatttgaatctcttacacttgagttccttgtagttagaaaataaaaata 139  Q
    |||||| ||||||| |||||||||||||||||||| || |||||||| |||||||    
T  36042111 ttttaagatttgaagctcttacacttgagttccttctatttagaaaaaaaaaata 36042165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 121
Target Start/End: Original strand, 14365442 - 14365522
Alignment:
Q  40 aaaatctaaagctatttcagtttatttactaacataaaaatcatgttttaatatttgaatctcttacacttgagttccttgt 121  Q
    ||||| |||||||||||| |||| ||||| ||||| |||||||| || ||| ||||||| ||| |||| |||||||||||||    
T  14365442 aaaatgtaaagctatttctgtttgtttaccaacat-aaaatcattttctaagatttgaagctcctacatttgagttccttgt 14365522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 152
Target Start/End: Complemental strand, 34790507 - 34790400
Alignment:
Q  43 atctaaagctatttcagtttatttactaacataaaaatcatgtttt-aatatttgaatctcttacacttgagttccttgtagttagaaaataaaaataga 141  Q
    ||||||||||||||| |||| |||||||||||||||||||| |||| || ||||||| ||||||||||||||||||||||| ||||||   |||||||||    
T  34790507 atctaaagctatttctgtttgtttactaacataaaaatcatttttttaagatttgaagctcttacacttgagttccttgtatttagaa---aaaaataga 34790411  T
Q  142 ttttgaaaaag 152  Q
    |||||||||||    
T  34790410 ttttgaaaaag 34790400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 146
Target Start/End: Complemental strand, 34590366 - 34590261
Alignment:
Q  40 aaaatctaaagctatttcagtttatttactaacataaaaatcatgttttaatatttgaatctcttacacttgagttccttgtagttagaaaataaaaata 139  Q
    ||||||| |||||||||| |||| ||||||| |||||||||||| |||||| ||||||| ||||||||||||||||| ||||  || ||||| |||||||    
T  34590366 aaaatctgaagctatttctgtttgtttactatcataaaaatcattttttaagatttgaagctcttacacttgagttcgttgtttttcgaaaa-aaaaata 34590268  T
Q  140 gattttg 146  Q
    |||||||    
T  34590267 gattttg 34590261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 5 - 137
Target Start/End: Original strand, 8806215 - 8806348
Alignment:
Q  5 aagaatctagagatattttttagagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaatca-tgttttaatatttgaatctct 103  Q
    |||||||||||||| ||||||| ||||||  | | |||||| |||||||||||  ||| ||||||||||||||||| | | |||||| |||| || ||||    
T  8806215 aagaatctagagattttttttaaagatttttagaaaaaatccaaagctatttctatttgtttactaacataaaaattatttttttaaaattttaaactct 8806314  T
Q  104 tacacttgagttccttgtagttagaaaataaaaa 137  Q
    |||||||||||||||| || |||||||| |||||    
T  8806315 tacacttgagttccttatatttagaaaaaaaaaa 8806348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 25530068 - 25530002
Alignment:
Q  5 aagaatctagagatatttttt-agagatttaaaaataaaatctaaagctatttcagtttatttacta 70  Q
    |||||||||||||| |||||| ||| |||| |||| |||||||||||||||||  |||| |||||||    
T  25530068 aagaatctagagatttttttttagaaattttaaaaaaaaatctaaagctatttatgtttgtttacta 25530002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 23094934 - 23095009
Alignment:
Q  48 aagctatttcagtttatttactaacataaaaatca---tgttttaatatttgaatctcttacacttgagttccttg 120  Q
    |||||||||  |||| ||||||||||||||||| |   | |||||  ||||||| |||||||||||||||||||||    
T  23094934 aagctatttatgtttgtttactaacataaaaataatttttttttacgatttgaagctcttacacttgagttccttg 23095009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 7 - 154
Target Start/End: Complemental strand, 49867569 - 49867419
Alignment:
Q  7 gaatctagagatatt-ttttagagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaatcatgtttt---aatatttgaatctc 102  Q
    |||||||||||| || ||||||| |||| |||| |||||||||||||||||| |||| ||||||||||||||||| || ||||   || |||||||   |    
T  49867569 gaatctagagattttattttagaaattttaaaa-aaaatctaaagctatttctgtttgtttactaacataaaaataatattttttaaagatttgaagtac 49867471  T
Q  103 ttacacttgagttccttgtagttagaaaataaaaatagattttgaaaaagat 154  Q
    |||||||| |||||||| || |||||||| ||||||||||||||||||||||    
T  49867470 ttacacttaagttccttatatttagaaaaaaaaaatagattttgaaaaagat 49867419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 53959019 - 53959172
Alignment:
Q  5 aagaatctagagatatttttt-agagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaatca---tgttttaatatttgaatc 100  Q
    |||||||||||||| |||||| ||| ||||  ||| |||||||||||||||||  |||| |||||||||||||||||||   | |||||| ||||||| |    
T  53959019 aagaatctagagatttttttttagatatttttaaaaaaaatctaaagctatttttgtttgtttactaacataaaaatcatttttttttaagatttgaaac 53959118  T
Q  101 tcttacacttgagttccttgtagttagaa--aataaaaatagattttgaaaaag 152  Q
    ||||||| ||||||| |||||| ||||||  || ||||| |||||||| |||||    
T  53959119 tcttacatttgagtttcttgtatttagaaagaaaaaaaaaagattttggaaaag 53959172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 34 - 152
Target Start/End: Complemental strand, 29134774 - 29134657
Alignment:
Q  34 aaaaataaaatctaaagctatttcagtttatttactaacataaaaatcatgtttt-aatatttgaatctcttacacttgagttccttgtagttagaaaat 132  Q
    ||||| ||||||||||||||||||  ||| ||||||| |||||||||||| |||| || |||| |||||||||||||||||||| || |  |||||||      
T  29134774 aaaaaaaaaatctaaagctatttctttttgtttactatcataaaaatcattttttaaagatttaaatctcttacacttgagttctttatgtttagaaa-- 29134677  T
Q  133 aaaaatagattttgaaaaag 152  Q
    ||||||||||||| ||||||    
T  29134676 aaaaatagattttaaaaaag 29134657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 55812429 - 55812507
Alignment:
Q  5 aagaatctagagatattttttagagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaatcat 83  Q
    |||||||||||||| ||||||||||||||    | ||||||||||||||||||| ||| ||| ||| ||||||||||||    
T  55812429 aagaatctagagattttttttagagatttttttaaaaaatctaaagctatttcaatttgtttgctatcataaaaatcat 55812507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 29445004 - 29444934
Alignment:
Q  85 ttttaatatttgaatctcttacacttgagttccttgtagttaga---aaataaaaatagattttgaaaaag 152  Q
    |||||| ||||||| ||||||||||||||||| ||||| |||||   ||| ||||||||||||||||||||    
T  29445004 ttttaagatttgaaactcttacacttgagttctttgtatttagaaagaaaaaaaaatagattttgaaaaag 29444934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 151
Target Start/End: Complemental strand, 29441441 - 29441287
Alignment:
Q  5 aagaatctagagatattttttag-agatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaat-----catgttttaatatttgaa 98  Q
    |||||| ||||||| |||||| | ||||||  ||| |||||||||||||||||  |||| |||||||||||||   |     | | |||||| |||||||    
T  29441441 aagaatatagagattttttttcggagatttttaaaaaaaatctaaagctatttatgtttgtttactaacataatctttttttctttttttaagatttgaa 29441342  T
Q  99 tctcttacacttgagttccttgtagttagaa--aataaaaatagattttgaaaaa 151  Q
     ||||||||||||||||| ||||| ||| ||  || |||||||||||||||||||    
T  29441341 actcttacacttgagttctttgtatttaaaaagaaaaaaaatagattttgaaaaa 29441287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 2467958 - 2468032
Alignment:
Q  5 aagaatctagagatatttttt-agagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaa 78  Q
    |||||||||||||| ||| || ||||||||  ||  |||||||||||||||||| |||| ||||||| |||||||    
T  2467958 aagaatctagagatttttgttcagagatttttaagaaaaatctaaagctatttctgtttgtttactatcataaaa 2468032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 19410900 - 19410948
Alignment:
Q  7 gaatctagagatattttttagagatttaaaaataaaatctaaagctattt 56  Q
    |||||||||||| ||||||||||||||||||| ||||||| ||| |||||    
T  19410900 gaatctagagattttttttagagatttaaaaa-aaaatctgaagttattt 19410948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 5 - 152
Target Start/End: Original strand, 36571039 - 36571187
Alignment:
Q  5 aagaatctagagatatttttta--gagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaatcatgtttt-aatatttgaatct 101  Q
    |||||||||||||| |||||||  |||||||  ||| |||||||||||||||||  |||| ||||||| |||||||||||| |||| || ||||||| ||    
T  36571039 aagaatctagagattttttttatagagatttttaaaaaaaatctaaagctatttttgtttctttactatcataaaaatcattttttaaagatttgaagct 36571138  T
Q  102 cttacacttgagttccttgtagttagaaaataaaaatagattttgaaaaag 152  Q
    |||||||||||||||||| |  ||  |||| ||||||||||||||||||||    
T  36571139 cttacacttgagttccttatgttt--aaaaaaaaaatagattttgaaaaag 36571187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 119
Target Start/End: Complemental strand, 10940087 - 10939973
Alignment:
Q  5 aagaatctagagatattttttagagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaatcatgttt-taatatttgaatctct 103  Q
    |||||||||||||| |||||| |||||||   || |||||||||||||||||| |||| ||||||| |||||||||||| |||  || ||||||| ||||    
T  10940087 aagaatctagagatttttttt-gagattttttaaaaaaatctaaagctatttctgtttgtttactatcataaaaatcatttttaaaagatttgaagctct 10939989  T
Q  104 tacacttgagttcctt 119  Q
    ||||| ||||||||||    
T  10939988 tacacctgagttcctt 10939973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 152
Target Start/End: Original strand, 11088293 - 11088419
Alignment:
Q  25 tagagatttaaaaataaaatctaaagctatttcagtttatttactaacat-aaaaatcatgttt-taatatttgaatctcttacacttgagttccttgta 122  Q
    ||||||||| |||| ||||||||||||||||||  ||| ||||||| ||| ||||||||| ||| ||| |||| || ||||||||||||||||| || |     
T  11088293 tagagattttaaaa-aaaatctaaagctatttctatttgtttactatcataaaaaatcatttttctaagatttaaagctcttacacttgagttctttatg 11088391  T
Q  123 gttagaaaataaaaatagattttgaaaaag 152  Q
     |||||||  |||||||||||||| |||||    
T  11088392 tttagaaa--aaaaatagattttggaaaag 11088419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 152
Target Start/End: Original strand, 18647770 - 18647914
Alignment:
Q  8 aatctagagatattttttagagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaatca---tgttttaatatttgaatctctt 104  Q
    ||||||||||| ||||||||||||||  ||| ||||||| ||||||||||  |||  |||||| ||||| | |||   | |||||| ||||||| |||||    
T  18647770 aatctagagattttttttagagatttttaaa-aaaatcttaagctatttctatttgcttactatcataacagtcatttttttttaagatttgaagctctt 18647868  T
Q  105 acacttgagttccttgtagttagaaaataaaaatagattttgaaaaag 152  Q
    |||||||||||||||||| |||||||  |||||||||||||| |||||    
T  18647869 acacttgagttccttgtatttagaaa--aaaaatagattttggaaaag 18647914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 152
Target Start/End: Complemental strand, 24401448 - 24401342
Alignment:
Q  45 ctaaagctatttcagtttatttactaacataaaaatcatgttt-taatatttgaatctcttacacttgagttccttgtagttagaaaataaaaatagatt 143  Q
    ||||| ||||||| |||| ||||||| |||||||||||| ||| ||| ||||||| |||||||||||||||||||| |  |||||||  |||||||||||    
T  24401448 ctaaatctatttctgtttgtttactatcataaaaatcatttttataagatttgaaactcttacacttgagttccttatgtttagaaa--aaaaatagatt 24401351  T
Q  144 ttgaaaaag 152  Q
    |||||||||    
T  24401350 ttgaaaaag 24401342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 31080005 - 31079897
Alignment:
Q  5 aagaatctagagatattttttagagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaatcatgtttt-aatatttgaatctct 103  Q
    |||||| ||||||| ||||||||||||||  ||| |||||||||||||||||  |||| ||||||| |||||||||||| |||| || |||||||  |||    
T  31080005 aagaatgtagagat-ttttttagagatttttaaa-aaaatctaaagctatttatgtttgtttactatcataaaaatcattttttaaagatttgaagttct 31079908  T
Q  104 tacacttgagt 114  Q
    || ||||||||    
T  31079907 tatacttgagt 31079897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 152
Target Start/End: Complemental strand, 3525360 - 3525295
Alignment:
Q  85 ttttaatatttgaatctcttacacttgagttccttgtagttagaaaataaaaatagattttgaaaaag 152  Q
    |||||| ||||||| ||||||||||||||||||||||  |||||||  |||||||||||||| |||||    
T  3525360 ttttaagatttgaagctcttacacttgagttccttgtttttagaaa--aaaaatagattttggaaaag 3525295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 23 - 137
Target Start/End: Original strand, 19983115 - 19983230
Alignment:
Q  23 tttagagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaatcatgt--tttaatatttgaatctcttacacttgagttccttg 120  Q
    |||||||||||  ||| ||||||||||| |||||| |||| ||||||| |||||||||||| |  || || || |||| | |||||| ||||||||||||    
T  19983115 tttagagatttttaaa-aaaatctaaagttatttctgtttgtttactatcataaaaatcattttcttaaaaatatgaaacccttacaattgagttccttg 19983213  T
Q  121 tagttagaaaataaaaa 137  Q
     | |||||||| |||||    
T  19983214 catttagaaaaaaaaaa 19983230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 18832810 - 18832728
Alignment:
Q  40 aaaatctaaagctatttcagtttatttactaacataaaaatcatgtttt--aatatttgaatctcttacacttgagttccttg 120  Q
    |||||||||||||||||  |||| | ||||| ||||||||| || ||||  || ||||||| |||||||||||||||| ||||    
T  18832810 aaaatctaaagctatttatgtttgtctactatcataaaaattattttttttaagatttgaagctcttacacttgagtttcttg 18832728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 56
Target Start/End: Complemental strand, 27578020 - 27577970
Alignment:
Q  5 aagaatctagagatattttttagagatttaaaaataaaatctaaagctattt 56  Q
    |||||||||||||| ||||||||||||||  ||| |||||||||||||||||    
T  27578020 aagaatctagagattttttttagagatttttaaa-aaaatctaaagctattt 27577970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 152
Target Start/End: Original strand, 29148611 - 29148708
Alignment:
Q  53 atttcagtttatttactaacataaaaatcatgtttt--aatatttgaatctcttacacttgagttccttgtagttagaaaataaaaatagattttgaaaa 150  Q
    ||||| |||| |||||||  ||||||||||| ||||  || ||||||| ||||||||||||||||| ||||  ||||||||    ||||||||||| |||    
T  29148611 atttccgtttgtttactattataaaaatcattttttttaagatttgaagctcttacacttgagttctttgtttttagaaaa----aatagattttggaaa 29148706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 30506604 - 30506516
Alignment:
Q  27 gagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaatcatgttttaatatttgaatctcttacacttgagttc 116  Q
    |||||||||||| ||||||||||| |||||  ||||  |||||| |||||||||||| ||| || |||| ||  ||||||| ||||||||    
T  30506604 gagatttaaaaa-aaaatctaaagatatttttgtttccttactatcataaaaatcatttttgaagattttaaattcttacagttgagttc 30506516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 39096076 - 39095972
Alignment:
Q  40 aaaatctaaagctatttcagtttatttactaacataaaaatcatgttttaatatttgaatctcttacacttgagttccttgtagttagaaaataaaaata 139  Q
    ||||| |||| |||||||  ||| ||||||| ||||||||| || |||||| |||| || ||||||||||| |||| ||| |  |||||||| ||| |||    
T  39096076 aaaatttaaaactatttctatttgtttactatcataaaaattattttttaagatttaaagctcttacactttagtttcttatgtttagaaaa-aaatata 39095978  T
Q  140 gatttt 145  Q
    ||||||    
T  39095977 gatttt 39095972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1206 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold1206
Description:

Target: scaffold1206; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 152
Target Start/End: Complemental strand, 2262 - 2132
Alignment:
Q  22 ttttagagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaatca-tgttttaatatttgaatctcttacacttgagttccttg 120  Q
    ||||||||||||   || ||||||| |||||||||| |||| ||||| |  |||||||||| | |||||| ||||||| |||||| |||||| |||||||    
T  2262 ttttagagattttttaaaaaaatctgaagctatttctgtttgtttaccattataaaaatcatttttttaagatttgaaactcttatacttgaattccttg 2163  T
Q  121 tagttagaaaataaaaatagattttgaaaaag 152  Q
    || ||| |||| |||||||||||||| |||||    
T  2162 tattta-aaaaaaaaaatagattttggaaaag 2132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 6786286 - 6786142
Alignment:
Q  5 aagaatctagagatattt-tttagagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaatcatgttttaat-atttgaatctc 102  Q
    |||||||||||||| ||| |||||||||||  ||| ||||||||| |||||||  |||| ||||||| |||||||||||| ||| ||  ||||||| |||    
T  6786286 aagaatctagagatttttatttagagattttcaaa-aaaatctaa-gctatttttgtttgtttactatcataaaaatcatttttgaaagatttgaagctc 6786189  T
Q  103 ttacacttgagttccttgtagttagaaaataaaaatagattttgaaaaag 152  Q
    ||||||||||||||||| |  ||||||   |||||||||||||| |||||    
T  6786188 ttacacttgagttccttatgtttagaa---aaaaatagattttggaaaag 6786142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 31295401 - 31295262
Alignment:
Q  5 aagaatctagagatatttttt-agagatttaaaaataaaatctaaa------gctatttcagtttatttactaacataaaaatca------tgttttaat 91  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||||      |||||||  |||| |||||||||||||||||||      | ||||||     
T  31295401 aagaatctagagatttttttttagagatttaaaaaaaaaatctaaagctaaagctatttttgtttgtttactaacataaaaatcaatttttttttttaag 31295302  T
Q  92 atttgaatctcttacacttgagttccttgtagttagaaaa 131  Q
    |||| || ||||| ||||||||||||||||| ||||||||    
T  31295301 atttaaagctctttcacttgagttccttgtacttagaaaa 31295262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 32739848 - 32739793
Alignment:
Q  3 agaagaatctagagatattttttagagattt--aaaaataaaatctaaagctattt 56  Q
    |||| ||||||||||| ||||||||||||||  ||||||||||||| |||||||||    
T  32739848 agaaaaatctagagattttttttagagattttaaaaaataaaatctgaagctattt 32739793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 33091812 - 33091922
Alignment:
Q  40 aaaatctaaagctatttcagtttatttactaacataaaaatcatgtttt-aatatttgaatctcttacacttgagttccttgtagttagaaaataaaaat 138  Q
    ||||||||| |||||||  |||| ||||||| ||| |||||||| |||| || ||||||| ||||||  ||||||||  ||||| ||||||||   ||||    
T  33091812 aaaatctaatgctatttatgtttgtttactatcatgaaaatcatttttttaagatttgaaactcttatgcttgagtttgttgtatttagaaaa---aaat 33091908  T
Q  139 agattttgaaaaag 152  Q
    |||||||| |||||    
T  33091909 agattttggaaaag 33091922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 3011300 - 3011413
Alignment:
Q  34 aaaaataaaatctaaagctatttcagtttatttactaacataaaaatcatgtttt-aatatttgaatctcttacacttgagttccttgtagttagaaaat 132  Q
    ||||| |||| ||||||||||||  |||| | ||||| |||||||||||| |||| || ||||||| |||||||||||||||||||| |  ||||||       
T  3011300 aaaaaaaaaacctaaagctatttttgtttgtctactatcataaaaatcattttttaaagatttgaagctcttacacttgagttccttatgtttagaa--- 3011396  T
Q  133 aaaaatagattttgaaa 149  Q
    |||||||||||||||||    
T  3011397 aaaaatagattttgaaa 3011413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 577591 - 577706
Alignment:
Q  5 aagaatctagagatattttttagagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaatcatgttttaatatttgaatctctt 104  Q
    ||||||||||| || | |||||||| ||| |||| ||||||| ||||||||||  ||| ||||||||||||||||| || |||||| ||  ||| |||||    
T  577591 aagaatctaga-atttcttttagaggttttaaaa-aaaatctgaagctatttctatttgtttactaacataaaaattattttttaagataggaagctctt 577688  T
Q  105 acacttgagttccttgta 122  Q
    |||||| |||| ||||||    
T  577689 acacttaagtttcttgta 577706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 152
Target Start/End: Complemental strand, 4149388 - 4149249
Alignment:
Q  5 aagaatctagagatattttttagagatttaaaaataaaatctaaagctatttcagtttatttactaacataaaaatcatgttt-taatatttgaatctct 103  Q
    |||||||||||| | ||||||||||||||  ||| ||||||||||||||||||  ||| ||||       ||||||||| |||  || ||||||| ||||    
T  4149388 aagaatctagagtttttttttagagatttttaaa-aaaatctaaagctatttccatttgttta-----gaaaaaatcatttttgaaagatttgaaactct 4149295  T
Q  104 tacacttgagttccttgtagttagaaaataaaaatagattttgaaaaag 152  Q
    |||||||||||||||| |  |||| |   ||||||||||||||||||||    
T  4149294 tacacttgagttccttatgtttagga---aaaaatagattttgaaaaag 4149249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 40 - 152
Target Start/End: Original strand, 62613 - 62725
Alignment:
Q  40 aaaatctaaagctatttcagtttatttactaacataaaaatcatgtt--ttaatatttgaatctcttacacttgagttccttgtagttagaaaataaaaa 137  Q
    ||||||| | |||||||| |||| ||||| | |||||||||||| ||  |||  |||| || ||||||||||||| ||||||||| |||||||  |||||    
T  62613 aaaatctgatgctatttctgtttgtttaccatcataaaaatcattttgtttatgatttaaaactcttacacttgaattccttgtatttagaaa--aaaaa 62710  T
Q  138 tagattttgaaaaag 152  Q
    ||||||||| |||||    
T  62711 tagattttggaaaag 62725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 11480 - 11585
Alignment:
Q  40 aaaatctaaagctatttcagtttatttactaacataaaaatca-tgttttaatatttgaatctcttacacttgagttccttgtagttagaaaataaaaat 138  Q
    ||||||||||| ||||||  ||| ||||||||||||||||||| | |||||  |||| || |||||||||||||   ||||||| |||||||||  ||||    
T  11480 aaaatctaaagttatttctatttgtttactaacataaaaatcatttttttaggatttaaaactcttacacttgaacgccttgtatttagaaaat-taaat 11578  T
Q  139 agatttt 145  Q
    |||||||    
T  11579 agatttt 11585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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