View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5625_high_24 (Length: 258)
Name: NF5625_high_24
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5625_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 31073067 - 31073291
Alignment:
| Q |
13 |
gagatccattgagcagtaaggatcattcttcaattcaatcaaggcatcaattacatcctcttcgtgtggaggcaatttctttctatttggatcaatatgt |
112 |
Q |
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| T |
31073067 |
gagatccattgagcagtaaggatcattcttcaattcaatcaaggcatcaattacatcctcttcgtgtggaggcaacttctttctatttggatcaatatgt |
31073166 |
T |
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| Q |
113 |
tcatcaaaaacgctctgnnnnnnnccatccaaaatcttgaacaatttctcaagacgactcatcaatccggtgaacttatcaacaatccctccaacaaaag |
212 |
Q |
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| T |
31073167 |
tcatcaaaaacactctggaaaaaaccatccaaaatcttgaacaatttctcaagacgactcatcaatccggtgaacttatcaacaatccctccaacaaaag |
31073266 |
T |
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| Q |
213 |
gcaaataatccgtgtaaaagaacga |
237 |
Q |
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| T |
31073267 |
gcaaataatccgtgtaaaagaacga |
31073291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 31039991 - 31040215
Alignment:
| Q |
13 |
gagatccattgagcagtaaggatcattcttcaattcaatcaaggcatcaattacatcctcttcgtgtggaggcaatttctttctatttggatcaatatgt |
112 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || || ||||||||||| ||||| || | |||||||| |||| |
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| T |
31039991 |
gagatccattgagcagtaaggatcattcttcagttcaatcaaggcatcaataacatcatcctcatgtggaggcaacttcttcctttctggatcaagatgt |
31040090 |
T |
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| Q |
113 |
tcatcaaaaacgctctgnnnnnnnccatccaaaatcttgaacaatttctcaagacgactcatcaatccggtgaacttatcaacaatccctccaacaaaag |
212 |
Q |
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| T |
31040091 |
tcatcaacaatactttgataaagttcatctgaaaccttgaacgttttctcaaggcgactcgtctttccggtgagcttatcaacaatccctccaacaaagg |
31040190 |
T |
|
| Q |
213 |
gcaaataatccgtgtaaaagaacga |
237 |
Q |
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| T |
31040191 |
gcaaataatccgcgtaaaagaacga |
31040215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 31053480 - 31053704
Alignment:
| Q |
13 |
gagatccattgagcagtaaggatcattcttcaattcaatcaaggcatcaattacatcctcttcgtgtggaggcaatttctttctatttggatcaatatgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || || ||||||||||| ||||| || | |||||||| |||| |
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| T |
31053480 |
gagatccattgagcagtaaggatcattcttcagttcaatcaaggcatcaataacatcatcctcatgtggaggcaacttcttcctttctggatcaagatgt |
31053579 |
T |
|
| Q |
113 |
tcatcaaaaacgctctgnnnnnnnccatccaaaatcttgaacaatttctcaagacgactcatcaatccggtgaacttatcaacaatccctccaacaaaag |
212 |
Q |
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||||||| || || || |||| ||| ||||||| ||||||||| |||||| || |||||||| ||||||||||||||||||||||| | |
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| T |
31053580 |
tcatcaacaatactttgataaagttcatctgaaaccttgaacgttttctcaaggcgactcgtctttccggtgagtttatcaacaatccctccaacaaagg |
31053679 |
T |
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| Q |
213 |
gcaaataatccgtgtaaaagaacga |
237 |
Q |
| |
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|||||||||||| |||||||||||| |
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| T |
31053680 |
gcaaataatccgcgtaaaagaacga |
31053704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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