View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5625_high_3 (Length: 709)

Name: NF5625_high_3
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5625_high_3
NF5625_high_3
[»] chr7 (3 HSPs)
chr7 (18-625)||(4181813-4182419)
chr7 (644-698)||(21037251-21037305)
chr7 (642-674)||(19896554-19896586)
[»] chr3 (2 HSPs)
chr3 (641-698)||(20096437-20096494)
chr3 (642-698)||(44334818-44334874)
[»] chr5 (5 HSPs)
chr5 (642-698)||(3723093-3723149)
chr5 (642-672)||(25345338-25345368)
chr5 (641-670)||(4954463-4954492)
chr5 (643-672)||(12417625-12417654)
chr5 (641-698)||(27340866-27340923)
[»] chr4 (4 HSPs)
chr4 (642-698)||(17363228-17363284)
chr4 (640-698)||(31147227-31147285)
chr4 (644-698)||(40335789-40335843)
chr4 (644-696)||(30866353-30866405)
[»] chr2 (1 HSPs)
chr2 (643-698)||(42665829-42665884)
[»] chr1 (4 HSPs)
chr1 (635-698)||(50017440-50017503)
chr1 (637-670)||(27578175-27578208)
chr1 (643-698)||(32216001-32216056)
chr1 (642-698)||(44641920-44641976)
[»] chr6 (2 HSPs)
chr6 (636-666)||(1255971-1256001)
chr6 (640-672)||(26396518-26396550)
[»] scaffold0542 (1 HSPs)
scaffold0542 (633-670)||(2843-2880)
[»] scaffold0020 (1 HSPs)
scaffold0020 (638-698)||(155900-155960)


Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 18 - 625
Target Start/End: Original strand, 4181813 - 4182419
Alignment:
Q  18 atataacaccttgtaaggtgaataagtgaagaatttaaagtttgaatattaacccaccacatattagatgtaattgagtcatattcacgaaaaaactgac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  4181813 atataacaccttgtaaggtgaataagtgaagaatttaaagtttgaatattaacccaccacatattagatgcaattgagtcatattcacgaaaacactgac 4181912  T
Q  118 aatcgattttacttatatatttatttaataatatttcttattgacaacnnnnnnnnnt--tcaaatatattcgtttgtaaatttagtcttgtgctttttc 215  Q
      ||| |||||||||||| ||||||||||||||||||||||| |||||            ||||||||||||||||||||||||||||||||||||||||    
T  4181913 ggtcggttttacttatatttttatttaataatatttcttattcacaacaaaaaaaaaaaatcaaatatattcgtttgtaaatttagtcttgtgctttttc 4182012  T
Q  216 tagtttttgcaaagttttataatgttaaaattggtctcgatattttgtctttctaatacccagttgatttgttagggagtgtgagaaatgttgatatgga 315  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4182013 tagtttttgcaaagttttataatgttaaaattggtctctatattttgtgtttctaatacccagttgatttgttagggagtgtgagaaatgttaatatgga 4182112  T
Q  316 tgtaatgcatataattaattccttcgacgtctcaacacaagaacaagaaagactcaatttgactattcaaagttgatggctcatataagtcaagtcatat 415  Q
    | |  ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  4182113 tctcctgcatataattaattccttcgacgtctcaacacaaaaacaagaaaaactcaatttgactattcatagttgatggctcataaaagtcaagtcatat 4182212  T
Q  416 ttctagtagatcattgacttggggtttcaactgttgtttgtttattggagttagagagagggagggcaaatttgtctgcgacagttctagaatgaatata 515  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||  |||    
T  4182213 ttctagtacatcattgatttgggggttcaactgttgtttgtttattggagatagagagagggagggcaaatttgtctgtgccagttctagaatga--ata 4182310  T
Q  516 ttgataggacaattttgaatatttttcccatacatctatctggtaagtacnnnnnnnaacaaatgatttttcggtcaacataggttgatatgcgacaccg 615  Q
    ||||||||||||||| ||||||||||| ||||||||||||| |||| |||       || ||||||||||| ||||||||||||||||||||||||||||    
T  4182311 ttgataggacaatttcgaatatttttcgcatacatctatctagtaaatactttttttaa-aaatgattttttggtcaacataggttgatatgcgacaccg 4182409  T
Q  616 tactacgaca 625  Q
    ||||||||||    
T  4182410 tactacgaca 4182419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 644 - 698
Target Start/End: Complemental strand, 21037305 - 21037251
Alignment:
Q  644 gagaaatgatatttgtacaattaatttattaaaaaattttgacaacgttctctct 698  Q
    ||||||||||||||||||||||||||| | | ||  |||||||||| ||||||||    
T  21037305 gagaaatgatatttgtacaattaatttctaacaactttttgacaactttctctct 21037251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 642 - 674
Target Start/End: Original strand, 19896554 - 19896586
Alignment:
Q  642 tagagaaatgatatttgtacaattaatttatta 674  Q
    |||||||||||||||||||||| ||||||||||    
T  19896554 tagagaaatgatatttgtacaactaatttatta 19896586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 641 - 698
Target Start/End: Complemental strand, 20096494 - 20096437
Alignment:
Q  641 ttagagaaatgatatttgtacaattaatttattaaaaaattttgacaacgttctctct 698  Q
    |||||||||||||||||||| ||||| ||||| | || ||||||||||| ||||||||    
T  20096494 ttagagaaatgatatttgtataattattttatgataatattttgacaactttctctct 20096437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 642 - 698
Target Start/End: Complemental strand, 44334874 - 44334818
Alignment:
Q  642 tagagaaatgatatttgtacaattaatttattaaaaaattttgacaacgttctctct 698  Q
    ||||||||||||||||||||||  | ||||||| ||  |||||||||| ||||||||    
T  44334874 tagagaaatgatatttgtacaaccactttattacaactttttgacaactttctctct 44334818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 642 - 698
Target Start/End: Complemental strand, 3723149 - 3723093
Alignment:
Q  642 tagagaaatgatatttgtacaattaatttattaaaaaattttgacaacgttctctct 698  Q
    |||||||||||||||||||||| || ||||||| ||  |||||||||| ||||||||    
T  3723149 tagagaaatgatatttgtacaactactttattacaatcttttgacaactttctctct 3723093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 642 - 672
Target Start/End: Original strand, 25345338 - 25345368
Alignment:
Q  642 tagagaaatgatatttgtacaattaatttat 672  Q
    |||||||||||||||||||||||||||||||    
T  25345338 tagagaaatgatatttgtacaattaatttat 25345368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 670
Target Start/End: Original strand, 4954463 - 4954492
Alignment:
Q  641 ttagagaaatgatatttgtacaattaattt 670  Q
    ||||||||||||||||||||||||||||||    
T  4954463 ttagagaaatgatatttgtacaattaattt 4954492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 643 - 672
Target Start/End: Original strand, 12417625 - 12417654
Alignment:
Q  643 agagaaatgatatttgtacaattaatttat 672  Q
    ||||||||||||||||||||||||||||||    
T  12417625 agagaaatgatatttgtacaattaatttat 12417654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 698
Target Start/End: Original strand, 27340866 - 27340923
Alignment:
Q  641 ttagagaaatgatatttgtacaattaatttattaaaaaattttgacaacgttctctct 698  Q
    |||||||||||||||||||||||| | ||||||| ||  |||||||||  ||||||||    
T  27340866 ttagagaaatgatatttgtacaatcactttattataattttttgacaattttctctct 27340923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 642 - 698
Target Start/End: Original strand, 17363228 - 17363284
Alignment:
Q  642 tagagaaatgatatttgtacaattaatttattaaaaaattttgacaacgttctctct 698  Q
    ||||||||||||||||||||||| | ||||||| ||  |||||||||| ||||||||    
T  17363228 tagagaaatgatatttgtacaatcactttattacaactttttgacaactttctctct 17363284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 640 - 698
Target Start/End: Original strand, 31147227 - 31147285
Alignment:
Q  640 attagagaaatgatatttgtacaattaatttattaaaaaattttgacaacgttctctct 698  Q
    ||||||||||||||||||||||||  | ||||||| ||  |||||||||| ||||||||    
T  31147227 attagagaaatgatatttgtacaaccactttattacaattttttgacaactttctctct 31147285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 644 - 698
Target Start/End: Original strand, 40335789 - 40335843
Alignment:
Q  644 gagaaatgatatttgtacaattaatttattaaaaaattttgacaacgttctctct 698  Q
    ||||||||||||||||||||| | ||||||| ||  |||||||||| ||||||||    
T  40335789 gagaaatgatatttgtacaatcattttattacaattttttgacaactttctctct 40335843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 644 - 696
Target Start/End: Original strand, 30866353 - 30866405
Alignment:
Q  644 gagaaatgatatttgtacaattaatttattaaaaaattttgacaacgttctct 696  Q
    ||||||||||||||||||||| | ||||| | ||| |||||||||| ||||||    
T  30866353 gagaaatgatatttgtacaatcattttatgataaatttttgacaactttctct 30866405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 643 - 698
Target Start/End: Complemental strand, 42665884 - 42665829
Alignment:
Q  643 agagaaatgatatttgtacaattaatttattaaaaaattttgacaacgttctctct 698  Q
    |||||||||||||||||||||| | ||||||| ||  |||||||||| ||||||||    
T  42665884 agagaaatgatatttgtacaatcactttattacaactttttgacaactttctctct 42665829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 698
Target Start/End: Complemental strand, 50017503 - 50017440
Alignment:
Q  635 tttatattagagaaatgatatttgtacaattaatttattaaaaaattttgacaacgttctctct 698  Q
    |||| ||||||||||||||||||||||||  | ||||||| ||  |||||||||| ||||||||    
T  50017503 tttaaattagagaaatgatatttgtacaacaattttattacaactttttgacaactttctctct 50017440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 670
Target Start/End: Original strand, 27578175 - 27578208
Alignment:
Q  637 tatattagagaaatgatatttgtacaattaattt 670  Q
    |||||| |||||||||||||||||||||||||||    
T  27578175 tatatttgagaaatgatatttgtacaattaattt 27578208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 643 - 698
Target Start/End: Original strand, 32216001 - 32216056
Alignment:
Q  643 agagaaatgatatttgtacaattaatttattaaaaaatttt-gacaacgttctctct 698  Q
    ||||||||||||||||||||| |||||| |||| ||||||| |||||| ||||||||    
T  32216001 agagaaatgatatttgtacaa-taattttttaataaattttagacaactttctctct 32216056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 642 - 698
Target Start/End: Complemental strand, 44641976 - 44641920
Alignment:
Q  642 tagagaaatgatatttgtacaattaatttattaaaaaattttgacaacgttctctct 698  Q
    ||||||||||||||||||||||  | ||||||| ||  |||||||||| ||||||||    
T  44641976 tagagaaatgatatttgtacaaccactttattacaattttttgacaactttctctct 44641920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 636 - 666
Target Start/End: Complemental strand, 1256001 - 1255971
Alignment:
Q  636 ttatattagagaaatgatatttgtacaatta 666  Q
    |||||||||||||||||||||||||||||||    
T  1256001 ttatattagagaaatgatatttgtacaatta 1255971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 640 - 672
Target Start/End: Complemental strand, 26396550 - 26396518
Alignment:
Q  640 attagagaaatgatatttgtacaattaatttat 672  Q
    ||||||||||||||||||||||||||| |||||    
T  26396550 attagagaaatgatatttgtacaattattttat 26396518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0542 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 670
Target Start/End: Original strand, 2843 - 2880
Alignment:
Q  633 aatttatattagagaaatgatatttgtacaattaattt 670  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  2843 aatttttattagagaaatgatatttgtacaatcaattt 2880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 638 - 698
Target Start/End: Original strand, 155900 - 155960
Alignment:
Q  638 atattagagaaatgatatttgtacaattaatttattaaaaaattttgacaacgttctctct 698  Q
    ||||| ||||||||||||||||||||  | ||||||| ||  |||||||||| ||||||||    
T  155900 atatttgagaaatgatatttgtacaaccattttattacaactttttgacaactttctctct 155960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University