View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5625_low_10 (Length: 433)
Name: NF5625_low_10
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5625_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 8e-62; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 21 - 145
Target Start/End: Original strand, 2796613 - 2796737
Alignment:
| Q |
21 |
atccggagaggaaaatggattgaattctacaagataacaaagaagtttgtgctaaatgcctataatatataagggctgcttttggtatcagccactcatg |
120 |
Q |
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| T |
2796613 |
atccggagaggaaaatggattgaattctacaagataacaaagaagtttgtgctaaatgcctataatatataagggctgcttttggtatcagccactcatg |
2796712 |
T |
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| Q |
121 |
cttaaaaagaaggcatggagtgtac |
145 |
Q |
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| T |
2796713 |
ctaaaaaagaaggcatggagtgtac |
2796737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 2796760 - 2796862
Alignment:
| Q |
140 |
gtgtacatattaatactttcctttctggaagtgcttaaattcatttttgttatattctatagtaagtagaagctttttgaactaatgctgcttcctgctg |
239 |
Q |
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| T |
2796760 |
gtgtatatattaatactttcctttttggaagtgct-aaatttatttttgttatattgcatagtgagtagaagctttttgaactaatgctgcttcctgctg |
2796858 |
T |
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| Q |
240 |
caat |
243 |
Q |
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|||| |
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| T |
2796859 |
caat |
2796862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 324 - 428
Target Start/End: Original strand, 2798385 - 2798492
Alignment:
| Q |
324 |
ttagtcaatatgcttcctaatgaatttttacctcatgaatatagt---tattctctctacctctctgatgagtatgtatgatatgtggccgactcatcct |
420 |
Q |
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| T |
2798385 |
ttagtcaatatgcttcctaatgagtttttacatcatgaatatagtagttaatatatctacctctcttatgagtatgaatcatgtgtggccgacgcatccc |
2798484 |
T |
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| Q |
421 |
atgcttct |
428 |
Q |
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| T |
2798485 |
atgattct |
2798492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 16392767 - 16392801
Alignment:
| Q |
26 |
gagaggaaaatggattgaattctacaagataacaa |
60 |
Q |
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| T |
16392767 |
gagaggaaaatggattgaattctacaagataacaa |
16392801 |
T |
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