View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5625_low_17 (Length: 312)
Name: NF5625_low_17
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5625_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 295
Target Start/End: Complemental strand, 7013443 - 7013159
Alignment:
| Q |
11 |
tatcatcagtcaatatggactctctccaataacattaccaggtggatcatagaaacaaatagtcaaactagcttccttcttaccagtacaagtagcttgt |
110 |
Q |
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| T |
7013443 |
tatcatcagtcaaaatggactctctccaataacattaccaggtggatcatagaaacaaatagtcaaactagcttccttcttaccagtacaagtagcttgt |
7013344 |
T |
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| Q |
111 |
gaacacccaagttgtgctgatttcttccacacaacctgtgtataaacaccacattcatgattcaccacacaagtattattcacatgaatgtaaaactctt |
210 |
Q |
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| T |
7013343 |
gaacacccaagttgtgctgatttcttccacacaacctgtgtataaacaccacattcatgattcaccacacaagtattattcacatgaatgtaaaactctt |
7013244 |
T |
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| Q |
211 |
tctccttcacccactcctccaccgctttgcttggtgtaacagccgcggcggaaccagcccaaagctggttaccgccgtacttgct |
295 |
Q |
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| T |
7013243 |
tctccttcacccactcctccaccgctttgcttggtgtaacagccgcggcggaaccagcccaaagctggttaccgccgtacttgct |
7013159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 49 - 224
Target Start/End: Complemental strand, 7007021 - 7006846
Alignment:
| Q |
49 |
caggtggatcatagaaacaaatagtcaaactagcttccttcttaccagtacaagtagcttgtgaacacccaagttgtgctgatttcttccacacaacctg |
148 |
Q |
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| T |
7007021 |
caggtggatcatagaaacaaatagtcaaaccagcttccttcttatcagtacaagtagcctgtgaacacccaagttgtactgatttcttccacacaacctg |
7006922 |
T |
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| Q |
149 |
tgtataaacaccac---attcatgattcaccacacaagtattattcacatgaatgtaaaactctttctccttcacccac |
224 |
Q |
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| T |
7006921 |
cctataagcatgacagaactcatgatt---cacacaagtatcattcacatgaatgtaaagctctttcttcctcacccac |
7006846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 27 - 229
Target Start/End: Original strand, 33556317 - 33556516
Alignment:
| Q |
27 |
ggactctctccaataacattaccaggtggatcatagaaacaaatagtcaaactagcttccttcttaccagtacaagtagcttgtgaacacccaagttgtg |
126 |
Q |
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| T |
33556317 |
ggactctctccaacataattcccaggtggataatagaaacaaatactcaaactagtatcttccttacc---acaagtagtttgagcacacccaagttcaa |
33556413 |
T |
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| Q |
127 |
ctgatttcttccacacaacctgtgtataaacaccacattcatgattcaccacacaagtattattcac-atgaatgtaaaactctttctccttcacccact |
225 |
Q |
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| T |
33556414 |
cactcttcctccaaacaacttgagtataaacaccacacctatgattcacaacacatgtatta-tcactatgattataaaactccttctccttcacccatt |
33556512 |
T |
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