View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5625_low_2 (Length: 755)
Name: NF5625_low_2
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5625_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 20 - 555
Target Start/End: Original strand, 47477318 - 47477857
Alignment:
| Q |
20 |
gagacgtttcaagctagcttcgcagcttgaacgcacatactccggtgaacctttgatgcccataccaccgccacttctggatataccaaattttgtagcc |
119 |
Q |
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| T |
47477318 |
gagacgtttcaagctagcttcgcagcttgaacgcacatactccggtgaacctttgatgcccataccaccgccacttctggatataccaaattttgtagcc |
47477417 |
T |
|
| Q |
120 |
acctggatcttttctctgggcagttgctttaaagcctagtcaacaaaatcaaataatgaaaagaaagnnnnnnnnnngctcaaattggcataa----caa |
215 |
Q |
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| T |
47477418 |
acctggatcttttctctgggcagttgctttaaagcctagtcaacaaaatcaaataatgaaaagaaagaaaaaaaaaagctcaaattggcataagtttcaa |
47477517 |
T |
|
| Q |
216 |
ttgcggtattaaatttagaacataaaagaaattcttggcannnnnnnnaatgataaatgttactaattagttagttgtgagattactatttactcgtctg |
315 |
Q |
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| T |
47477518 |
ttgcggtattaaatttagaacataaaagaaattcttggcattttttttaatgataaatgttactagttagttagttgtgagattactatttactcgtctg |
47477617 |
T |
|
| Q |
316 |
tccggatttaaacccaggacctcttggcaaagtaccaattcttgtagttattattaatatgtatatacctttccaaccaaaatttcattcccaccatcga |
415 |
Q |
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| T |
47477618 |
tccagatttaaacccaggacctcttggcaaagtaccaattcttgtagttattattaatatgtatatacctttccaaccaaaatttcattcccaccatcga |
47477717 |
T |
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| Q |
416 |
gtccataaacatcagcggtgtcnnnnnnngtgatgcctttactgaatgcatgattaattacggaaatgccaatttcttcaggaagaggatcattgtatcc |
515 |
Q |
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| T |
47477718 |
gtccataaacatcagcggtgtcaaaaaaagtgatgcctttactgaatgcatgattaattacggaaatgccaatttcttcaggaagaggatcattgtatcc |
47477817 |
T |
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| Q |
516 |
tccactgagggccatacaccctaaaccgaactttgaaacc |
555 |
Q |
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| T |
47477818 |
tccactgagggccatacaccctaaaccgaactttgaaacc |
47477857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 628 - 740
Target Start/End: Original strand, 47477933 - 47478045
Alignment:
| Q |
628 |
gacaattgtatatgtaagtgtaagtgtacaagtgagtgaagtgatgatacctgaaagccttgggttccaagtgagacatgaggaattagttcagtttgtg |
727 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47477933 |
gacatttgtatatgtaagtgtaagtgtacaagtgagtgaagtgatgatacctgaaagccttgggttccaagtgagacatgaggaattagttcagtttgtg |
47478032 |
T |
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| Q |
728 |
tttgtgtttgtgt |
740 |
Q |
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| T |
47478033 |
tttgtgtttgtgt |
47478045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 20 - 176
Target Start/End: Original strand, 47486609 - 47486767
Alignment:
| Q |
20 |
gagacgtttcaagctagcttcgcagcttgaacgcacatactccggtgaacctttgatgcccataccaccgcca---cttctggatataccaaattttgta |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||| |||||||| || ||||||| |||||| ||||||||| |
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| T |
47486609 |
gagacgtttcaagctagcttcgcagcatgaacgcacataatccggtgaacctt-gattaccataccagaatcatcgcttctggctataccgaattttgta |
47486707 |
T |
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| Q |
117 |
gccacctggatcttttctctgggcagttgctttaaagcctagtcaacaaaatcaaataat |
176 |
Q |
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| T |
47486708 |
gccacctggaccttttctctaggtagttgctttaaagcctagtcaacaaaaccaaataat |
47486767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 93 - 173
Target Start/End: Original strand, 47474069 - 47474149
Alignment:
| Q |
93 |
cttctggatataccaaattttgtagccacctggatcttttctctgggcagttgctttaaagcctagtcaacaaaatcaaat |
173 |
Q |
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| T |
47474069 |
cttctagatataccaaattttgtagccaactggatcttttctctgggcaattgctttaatgcctagtcaacaaaatcaaat |
47474149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 381 - 536
Target Start/End: Original strand, 47486857 - 47487012
Alignment:
| Q |
381 |
tacctttccaaccaaaatttcattcccaccatcgagtccataaacatcagcggtgtcnnnnnnngtgatgcctttactgaatgcatgattaattacggaa |
480 |
Q |
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||||||||||||||| |||||||| |||||||||| ||||||||||||||| || || |||||||||||||| ||||||| ||||||| |||| |
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| T |
47486857 |
tacctttccaaccaatatttcattaccaccatcgactccataaacatcagcagtatcaaataaagtgatgcctttactaaatgcatacttaattatggaa |
47486956 |
T |
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| Q |
481 |
atgccaatttcttcaggaagaggatcattgtatcctccactgagggccatacaccc |
536 |
Q |
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| T |
47486957 |
ataccatcttgctcaggaagaagatcactgtaggctccaccgagtcccatacaccc |
47487012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 450 - 555
Target Start/End: Original strand, 47474260 - 47474365
Alignment:
| Q |
450 |
gcctttactgaatgcatgattaattacggaaatgccaatttcttcaggaagaggatcattgtatcctccactgagggccatacaccctaaaccgaacttt |
549 |
Q |
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|||||||||||| |||| |||||||||||||| ||| || ||||||||||||||||||||| ||||| |||| |||||||||| ||||| || ||| |
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| T |
47474260 |
gcctttactgaaagcatagttaattacggaaataccatcttgttcaggaagaggatcattgtaagctccagtgagtcccatacacccgaaacccaatttt |
47474359 |
T |
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| Q |
550 |
gaaacc |
555 |
Q |
| |
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|||||| |
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| T |
47474360 |
gaaacc |
47474365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 676 - 725
Target Start/End: Original strand, 47487029 - 47487078
Alignment:
| Q |
676 |
acctgaaagccttgggttccaagtgagacatgaggaattagttcagtttg |
725 |
Q |
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| T |
47487029 |
acctgaaagccttgggttccaagtgtaacatgaggaattagctcggtttg |
47487078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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