View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5625_low_22 (Length: 268)
Name: NF5625_low_22
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5625_low_22 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 29963366 - 29963617
Alignment:
| Q |
1 |
taactcactacaacttacttatttcctttttgacacgacacagtttcaacttattttaacatgtataattcattttcctctagtcgaacctgaacctctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29963366 |
taactcactacaacttacttatttcctttttgacacgacacagtttcaacttattttaacatgtataattcattttcctctagtcgaacctgaacctctt |
29963465 |
T |
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| Q |
101 |
ctatgtttctnnnnnnntagtgaagaaaataaattcaactcatttgaatacttgattttatgttttcaagctacattaaattggttcacggcactagtgt |
200 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29963466 |
ctatgtttctaaaaaaatagttaagaaaataaattcaactcatttgaatacttgattttatgttttcaagctacattaaattggttcacggcactagtgt |
29963565 |
T |
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| Q |
201 |
acgtatcaccctatatacta---tatattgatcaaaatcctatcatttctac |
249 |
Q |
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||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29963566 |
acgtatccccctatatactatattatattgatcaaaatcctatcatttctac |
29963617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 2038796 - 2038542
Alignment:
| Q |
1 |
taactcactacaacttacttatttcctttttgacacgacacagtttcaacttattttaacatgtataattcattttcctctagtcgaacctgaacctctt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
2038796 |
taactcactacaacttacttatttcctttttgacacgacacagtttcaacttattttaacatgtataattcattttcctttagtcgaatctgaacctctt |
2038697 |
T |
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| Q |
101 |
ctatgtttctnnnnnnnt-----agtgaagaaaa-taaattcaactcatttgaatacttgattttatgttttcaagctacattaaattggttcacggcac |
194 |
Q |
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| T |
2038696 |
ctatgtttctagtaatttctaatagttaagaaaaataaattcaactcatttgaatacttgattttatgttttcaggctacattaaattggttcacggcac |
2038597 |
T |
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| Q |
195 |
tagtgtacgtatcaccctatatactatatattgatcaaaatcctatcatttctac |
249 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2038596 |
tagtatacgtatcaccctatatactatatattgatcaaaatcctatcatttctac |
2038542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 34926 - 35181
Alignment:
| Q |
1 |
taactcactacaacttacttatttcctttttgacacgacacagtttcaacttattttaacatgtataattcattttcctctagtcgaacctgaacctctt |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34926 |
taactcactacaacttacttatttcctttttgacacgacacagtttcaacttattttaacatgtataattcattttcctctagtcgaacatgaacctctt |
35025 |
T |
|
| Q |
101 |
c--tatgtttctnnnnnnnt-----agtgaagaaaataaattcaactcatttgaatacttgattttatgttttcaagctacattaaattggttcacggca |
193 |
Q |
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| ||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35026 |
ccatatgtttctagtaatttctaatagttaagaaaataaattcaactcatttgaatacttgattttatgttttcaggctacattaaattggttcacggca |
35125 |
T |
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| Q |
194 |
ctagtgtacgtatcaccctatatactatatattgatcaaaatcctatcatttctac |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35126 |
ctagtgtacgtatcaccctatatactatatattgatcaaaatcctatcatttctac |
35181 |
T |
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