View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5625_low_23 (Length: 262)
Name: NF5625_low_23
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5625_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 203 - 253
Target Start/End: Complemental strand, 29306501 - 29306451
Alignment:
| Q |
203 |
tttttaaaaataaactaatgatcataacacaaacctcaactgaagaataat |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29306501 |
tttttaaaaataaactaatgatcataacacaaacctcaactgaagaataat |
29306451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 29297736 - 29297691
Alignment:
| Q |
208 |
aaaaataaactaatgatcataacacaaacctcaactgaagaataat |
253 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
29297736 |
aaaattaaactaatgagcataacacaaaccttaactgaagaataat |
29297691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 184
Target Start/End: Complemental strand, 29298007 - 29297939
Alignment:
| Q |
117 |
ttgaaagtccattcttattatttactttttct-ggataatttgaaaattctgcatgaagcatgctttgt |
184 |
Q |
| |
|
||||||||||||| | ||||||| ||||| | |||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
29298007 |
ttgaaagtccattatgattatttgtttttttttggataagttgaaaactctgcatgaagcatgctttgt |
29297939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University