View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5625_low_25 (Length: 252)
Name: NF5625_low_25
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5625_low_25 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 83 - 252
Target Start/End: Complemental strand, 30553744 - 30553571
Alignment:
| Q |
83 |
aaatcgaccaaccaaaccgatccaaacctaataattagacgaaactaacttatcagttctgataatcc----gagcgatttttattaacccaaaaaccag |
178 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||| |
|
|
| T |
30553744 |
aaatcgaccaaccaaaccgatccaaaactaataattagacgaaactaacttatcagttctgataatcctaatgagcgatttttatcaacccaaaaatcag |
30553645 |
T |
|
| Q |
179 |
tttctataacacttacagtatttacttggttttcatcctaaaaaatgatttctattaactaaaaaattgatttt |
252 |
Q |
| |
|
||||||||||||||| |||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
30553644 |
tttctataacacttagagtacttacttggtttcaatcctaaaaattgatttctattaactaaaaaattgatttt |
30553571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 89
Target Start/End: Complemental strand, 30554709 - 30554626
Alignment:
| Q |
7 |
tcgaagaatatcgatgaaaccgaaaatccaaatcgacctaa-ccgaaaaagtatacaaccttatttagttcggttcaaaatcga |
89 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||| |||| |||||||||||| | ||||| ||||||||||||||||||||| |
|
|
| T |
30554709 |
tcgaacaaaatcgatgaaaccgaaaatccaaatcgagctaaaccgaaaaagtatccgaccttgtttagttcggttcaaaatcga |
30554626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 44471044 - 44471112
Alignment:
| Q |
18 |
cgatgaaaccgaaaatccaaatcga-cctaaccgaaaaagtatacaaccttatttagttcggttcaaaa |
85 |
Q |
| |
|
|||||||| |||||||||||| ||| || ||||||||| |||| | ||||| ||||||||||||||||| |
|
|
| T |
44471044 |
cgatgaaatcgaaaatccaaaccgaaccaaaccgaaaatgtatccgaccttgtttagttcggttcaaaa |
44471112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 779628 - 779589
Alignment:
| Q |
46 |
aaccgaaaaagtatacaaccttatttagttcggttcaaaa |
85 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
779628 |
aaccgaaaaagtatccaaccttgtttagttcggttcaaaa |
779589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 53393314 - 53393246
Alignment:
| Q |
18 |
cgatgaaaccgaaaatccaaatcg-acctaaccgaaaaagtatacaaccttatttagttcggttcaaaa |
85 |
Q |
| |
|
||||||||||||||||||||| || ||| |||| ||||||||| | ||||| ||| |||||||| |||| |
|
|
| T |
53393314 |
cgatgaaaccgaaaatccaaaccgaaccaaaccaaaaaagtatccgaccttgtttggttcggtttaaaa |
53393246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University