View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5625_low_27 (Length: 246)
Name: NF5625_low_27
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5625_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 29334888 - 29335119
Alignment:
| Q |
1 |
tttttcccatgatcataaacatataaccctagttccctacacaaagtttgacatttacacactgaaggacaaaatgaaaacacataatctttatcagctt |
100 |
Q |
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| T |
29334888 |
tttttcccatgatcataaacatataaccctagttccctacacaaagtttgacatttacacactgaaggacaaaatgaaaacacataatctttatcagctt |
29334987 |
T |
|
| Q |
101 |
tctcaatcttaaaccaattaaaaattgtgtcaaaccccggattaccttctacacctcctgtagccaaaaaccacacccccgacaacactttattaagctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29334988 |
tctcaatcttaaaccaattaaaaattgtgtcaaaccccggattaccttctacacctcctgtagccaaaaaccacacccccgacaacactttattaagctt |
29335087 |
T |
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| Q |
201 |
ccaaacttgtgattgagcacatgtagtttttg |
232 |
Q |
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| T |
29335088 |
ccaaacttgtgattgagcacatgtagtttttg |
29335119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 12 - 232
Target Start/End: Original strand, 29323335 - 29323558
Alignment:
| Q |
12 |
atcataaacatataaccctagttccctacacaaagtttgacatttacacact---gaaggacaaaatgaaaacacataatctttatcagctttctcaatc |
108 |
Q |
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| T |
29323335 |
atcatcaacaaacaaccctagttccctacacaaagtttgacatttgcaagcttcagcaggacagaaagaaagcacataatctttatcagctttctcaatc |
29323434 |
T |
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| Q |
109 |
ttaaaccaattaaaaattgtgtcaaaccccggattaccttctacacctcctgtagccaaaaaccacacccccgacaacactttattaagcttccaaactt |
208 |
Q |
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| T |
29323435 |
ttaaaccaattaccaacagttgccatacttggattaccttctacaccccctgtagctaaaaaccacacccctgtcaactctttaagaagcttccaaactt |
29323534 |
T |
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| Q |
209 |
gtgattgagcacatgtagtttttg |
232 |
Q |
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| T |
29323535 |
gtgtttgaggacatttcgtttttg |
29323558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 166 - 232
Target Start/End: Original strand, 29318239 - 29318305
Alignment:
| Q |
166 |
aaaaaccacacccccgacaacactttattaagcttccaaacttgtgattgagcacatgtagtttttg |
232 |
Q |
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|||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
29318239 |
aaaaaccacacccctgacaacactttagaaagctgccaaacttgtgattgagcacatgtagtttttg |
29318305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 118
Target Start/End: Original strand, 29317969 - 29318044
Alignment:
| Q |
43 |
aaagtttgacatttacacactgaaggacaaaatgaaaacacataatctttatcagctttctcaatcttaaaccaat |
118 |
Q |
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||||| ||||||| ||| ||| |||||||||| |||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
29317969 |
aaagtctgacattgacaaactaaaggacaaaaagaaagcacataatcattatcagctttctcaatcttaaaccaat |
29318044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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