View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5625_low_4 (Length: 652)

Name: NF5625_low_4
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5625_low_4
NF5625_low_4
[»] chr1 (3 HSPs)
chr1 (166-403)||(15156700-15156938)
chr1 (426-529)||(19913564-19913667)
chr1 (336-403)||(20513289-20513356)
[»] chr8 (6 HSPs)
chr8 (166-407)||(25555600-25555833)
chr8 (336-404)||(1175-1243)
chr8 (336-404)||(14674730-14674798)
chr8 (336-402)||(20133320-20133386)
chr8 (166-239)||(25549303-25549376)
chr8 (592-636)||(36283971-36284015)
[»] chr3 (3 HSPs)
chr3 (166-407)||(20010996-20011229)
chr3 (426-528)||(10776629-10776731)
chr3 (336-404)||(33483305-33483373)
[»] chr6 (1 HSPs)
chr6 (166-407)||(22621109-22621342)
[»] chr7 (3 HSPs)
chr7 (171-337)||(19808513-19808677)
chr7 (30-141)||(19808684-19808795)
chr7 (336-402)||(44358685-44358751)
[»] chr5 (1 HSPs)
chr5 (426-529)||(40572058-40572161)
[»] scaffold0130 (1 HSPs)
scaffold0130 (426-529)||(18757-18860)
[»] scaffold0076 (1 HSPs)
scaffold0076 (336-404)||(48009-48077)
[»] scaffold0013 (1 HSPs)
scaffold0013 (336-404)||(134884-134952)
[»] chr4 (2 HSPs)
chr4 (532-595)||(24090932-24090995)
chr4 (532-595)||(24086870-24086933)
[»] chr2 (1 HSPs)
chr2 (336-394)||(23695014-23695072)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 166 - 403
Target Start/End: Complemental strand, 15156938 - 15156700
Alignment:
Q  166 aattatattgtgtgcagttattttcta-gaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggtt 264  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  15156938 aattatattgtgtgctgttattttctaagaatgtgtgtattctgttatataaataaagaaaagtcagacttaatagttatcttagaattattgtgtggtt 15156839  T
Q  265 cattagaaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttcaggcggtacgataacacaacatggcgat 364  Q
    |||||| ||||||||||||||||||| |||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  15156838 cattaggaaaggagagacacaaggctcttgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttcaggcggtacgataacacaacatggcgat 15156739  T
Q  365 ttctacaaaatcagctcccttgaagccatctagtatcag 403  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  15156738 ttctacaaagtcagctcccttgaagccatctcgtatcag 15156700  T

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Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 426 - 529
Target Start/End: Complemental strand, 19913667 - 19913564
Alignment:
Q  426 aaagtagccggcgaaaccaaaccagctttggcgaacaattctggcgaataccaatccagcttcgacgatcgatttgtccaatcacgaggctattgatact 525  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19913667 aaagtagccggcgaaaccaaaccagctttggcgaacaattctggcgaataccaatccagcttcgacgatcaatttgtccaatcacgaggctattgatact 19913568  T
Q  526 ccag 529  Q
    ||||    
T  19913567 ccag 19913564  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 336 - 403
Target Start/End: Original strand, 20513289 - 20513356
Alignment:
Q  336 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctagtatcag 403  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  20513289 caggcggtacgataacacagcatggcgatttctacaaaatcagctcccttgaagccatctcgtatcag 20513356  T

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Target: chr8 (Bit Score: 145; Significance: 5e-76; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 166 - 407
Target Start/End: Original strand, 25555600 - 25555833
Alignment:
Q  166 aattatattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggttc 265  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||        ||||| ||||||||| ||    
T  25555600 aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata--------agaatcattgtgtggctc 25555691  T
Q  266 attagaaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttcaggcggtacgataacacaacatggcgatt 365  Q
    ||||| ||||||||||||||||| | |||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||    
T  25555692 attaggaaaggagagacacaaggatcttgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttcaggcggtacgatagcacaacatggcgatt 25555791  T
Q  366 tctacaaaatcagctcccttgaagccatctagtatcaggaaa 407  Q
    |||||||| ||||||| ||||||||| ||| |||||||||||    
T  25555792 tctacaaagtcagctctcttgaagccttctcgtatcaggaaa 25555833  T

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Target: chr8; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 336 - 404
Target Start/End: Complemental strand, 1243 - 1175
Alignment:
Q  336 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctagtatcagg 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1243 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctcgtatcagg 1175  T

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Target: chr8; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 336 - 404
Target Start/End: Original strand, 14674730 - 14674798
Alignment:
Q  336 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctagtatcagg 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  14674730 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctcgtatcagg 14674798  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 336 - 402
Target Start/End: Complemental strand, 20133386 - 20133320
Alignment:
Q  336 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctagtatca 402  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  20133386 caggcggtacgataacacaacatggcgatttctacaaaattagctcccttgaagccatctcgtatca 20133320  T

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Target: chr8; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 25549303 - 25549376
Alignment:
Q  166 aattatattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaata 239  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||    
T  25549303 aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata 25549376  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 592 - 636
Target Start/End: Complemental strand, 36284015 - 36283971
Alignment:
Q  592 atagatccatatctagttggaaattgcttactaaaagtactaatt 636  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  36284015 atagatccatatctagttggaaattgcttactaaaagtgctaatt 36283971  T

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Target: chr3 (Bit Score: 145; Significance: 5e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 166 - 407
Target Start/End: Complemental strand, 20011229 - 20010996
Alignment:
Q  166 aattatattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggttc 265  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||        ||||| ||||||||| ||    
T  20011229 aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata--------agaatcattgtgtggctc 20011138  T
Q  266 attagaaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttcaggcggtacgataacacaacatggcgatt 365  Q
    ||||| |||||| |||||||||||| |||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||||||    
T  20011137 attaggaaaggaaagacacaaggctcttgaaaccttgtgagtgtgtactgtgaatatttctgtgtgatttcaggcggtacgatagcacaacatggcgatt 20011038  T
Q  366 tctacaaaatcagctcccttgaagccatctagtatcaggaaa 407  Q
    |||||||| ||||||| ||||||||| ||| |||||||||||    
T  20011037 tctacaaagtcagctctcttgaagccttctcgtatcaggaaa 20010996  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 426 - 528
Target Start/End: Complemental strand, 10776731 - 10776629
Alignment:
Q  426 aaagtagccggcgaaaccaaaccagctttggcgaacaattctggcgaataccaatccagcttcgacgatcgatttgtccaatcacgaggctattgatact 525  Q
    |||||||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||    
T  10776731 aaagtagccggcgaaaccaaaccagctttggcgagcaattctagcgaatatcaatccagcttcgaagatcaatttgtccaatcacgaggctattgatact 10776632  T
Q  526 cca 528  Q
    |||    
T  10776631 cca 10776629  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 336 - 404
Target Start/End: Complemental strand, 33483373 - 33483305
Alignment:
Q  336 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctagtatcagg 404  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  33483373 caggctgtacgataacacaacatggcgatttctacaaaattagctcccttgaagccatcttgtatcagg 33483305  T

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Target: chr6 (Bit Score: 133; Significance: 8e-69; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 8e-69
Query Start/End: Original strand, 166 - 407
Target Start/End: Complemental strand, 22621342 - 22621109
Alignment:
Q  166 aattatattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggttc 265  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||        ||||| ||||||||| ||    
T  22621342 aattatattgtgtgctgttattttatagaatgtgtgtattctgttatataaataaagaaaagtcagacttaata--------agaatcattgtgtggctc 22621251  T
Q  266 attagaaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttcaggcggtacgataacacaacatggcgatt 365  Q
    ||||| ||||||||||||||||| | |||||||||||| ||| |||||||| ||||||| |||||||||||||||||||||||| |||| ||||||| ||    
T  22621250 attaggaaaggagagacacaaggttcttgaaaccttgtgagtatgtactgtgaatatttctgtgtgatttcaggcggtacgatagcacagcatggcggtt 22621151  T
Q  366 tctacaaaatcagctcccttgaagccatctagtatcaggaaa 407  Q
    |||||||| ||||||| ||||||||| ||| |||||||||||    
T  22621150 tctacaaagtcagctctcttgaagccttctcgtatcaggaaa 22621109  T

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Target: chr7 (Bit Score: 112; Significance: 3e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 171 - 337
Target Start/End: Original strand, 19808513 - 19808677
Alignment:
Q  171 tattgtgtgcagttattttctagaatgtgtgtattctgttatataaataaagaaaagtcatatttaatagttatcttagaattattgtgtggttcattag 270  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||| |    
T  19808513 tattgtgtgcagttattttctagaatgtg--tattctgttatataaataaagaatagtcagacttaatagttatcttagaattattgtgtggttcattgg 19808610  T
Q  271 aaaaggagagacacaaggcttttgaaaccttgtaagtgtgtactgtcaatatttttgtgtgatttca 337  Q
    |||||||||||||||||||| | | |||||||| |||||||||||| ||||||| ||||| ||||||    
T  19808611 aaaaggagagacacaaggctctcggaaccttgtgagtgtgtactgtgaatatttctgtgtaatttca 19808677  T

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Target: chr7; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 19808795 - 19808684
Alignment:
Q  30 tgatagaaactgataccaataggataaatgactgaatattattgtttattattgaatattctctggggaaaggttccctaatcagagataaatatacaat 129  Q
    |||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  19808795 tgatagaaactggtaccaataggataaacaactgaatattattgtttattattgaatattctctggggaaaggtttcctaatcagagataaatatacaat 19808696  T
Q  130 cacagacttgta 141  Q
    |||| |||||||    
T  19808695 cacacacttgta 19808684  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 336 - 402
Target Start/End: Original strand, 44358685 - 44358751
Alignment:
Q  336 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctagtatca 402  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  44358685 caggcggtacgataacacaacatggcgatttctacaaaattagctcccttgaagccatctcgtatca 44358751  T

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Target: chr5 (Bit Score: 100; Significance: 4e-49; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 426 - 529
Target Start/End: Complemental strand, 40572161 - 40572058
Alignment:
Q  426 aaagtagccggcgaaaccaaaccagctttggcgaacaattctggcgaataccaatccagcttcgacgatcgatttgtccaatcacgaggctattgatact 525  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  40572161 aaagtagccggcgaaaccaaaccagctttggcgaacaattctggcgaataccaatccagcttcgacgatcaatttgtccaatcacgaggctattgatact 40572062  T
Q  526 ccag 529  Q
    ||||    
T  40572061 ccag 40572058  T

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Target: scaffold0130 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0130
Description:

Target: scaffold0130; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 426 - 529
Target Start/End: Complemental strand, 18860 - 18757
Alignment:
Q  426 aaagtagccggcgaaaccaaaccagctttggcgaacaattctggcgaataccaatccagcttcgacgatcgatttgtccaatcacgaggctattgatact 525  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  18860 aaagtagccggcgaaaccaaaccaactttggcgaacaattctggcgaataccaatccagcttcgatgatcgatttgtccaaacacgaggctattgatact 18761  T
Q  526 ccag 529  Q
    ||||    
T  18760 ccag 18757  T

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Target: scaffold0076 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 336 - 404
Target Start/End: Original strand, 48009 - 48077
Alignment:
Q  336 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctagtatcagg 404  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  48009 caggcggtacggtaacacaacatggcgatttctacaaaatcagctcccttgaagccatctcgtatcagg 48077  T

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Target: scaffold0013 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 336 - 404
Target Start/End: Complemental strand, 134952 - 134884
Alignment:
Q  336 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatctagtatcagg 404  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  134952 caggcggtacaataacacaacatggcgatttctacaaaatcagctcccttgaagccatctcgtatcagg 134884  T

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Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 532 - 595
Target Start/End: Complemental strand, 24090995 - 24090932
Alignment:
Q  532 ggaggaggattgcagggacttagactccagcttgcacttcttgaccgaaattttaatgagatag 595  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24090995 ggaggaagattgcagggacttagactccagcttgcacttcttgaccgaaattttaatgagatag 24090932  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 532 - 595
Target Start/End: Complemental strand, 24086933 - 24086870
Alignment:
Q  532 ggaggaggattgcagggacttagactccagcttgcacttcttgaccgaaattttaatgagatag 595  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24086933 ggaggaagattgcagggacttagactccagcttgcacttcttgaccgagattttaatgagatag 24086870  T

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Target: chr2 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 336 - 394
Target Start/End: Original strand, 23695014 - 23695072
Alignment:
Q  336 caggcggtacgataacacaacatggcgatttctacaaaatcagctcccttgaagccatc 394  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23695014 caggcggtacgataacacagcatggcgatttctacaaaatcagctcccttgaagccatc 23695072  T

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