View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5625_low_6 (Length: 537)
Name: NF5625_low_6
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5625_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 82 - 527
Target Start/End: Complemental strand, 42663067 - 42662622
Alignment:
| Q |
82 |
ttaaacccttaatttcttgtattattaccagtttccactgatatcaagaagtaaagaactggaacgtttcatgaaagatataccaagtgacagtgagaag |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42663067 |
ttaaacccttaatttcttgtattattaccagtttccactgatatcaagaagtaaagaactggaacgtttcatgaaagatataccaagtgacagtgagaag |
42662968 |
T |
|
| Q |
182 |
tcaattttggaacttcatgatctaccaggaggagccaaagcctttctccttattgctaggttctgttatggtgtcaaaatggaactaactccatcaaatg |
281 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662967 |
tcaattttggaacttcatgatctaccaggaggagccaaagcctttctccttattgctaggttctgttatggtgtcaaaatggaactaactccatcaaatg |
42662868 |
T |
|
| Q |
282 |
tagttcctctaagatgtgcagctgagtttctacaaatgagtgaggattatggagaaggaaacctaatgatacaaactgaaaatttccttaaccacatatt |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662867 |
tagttcctctaagatgtgcagctgagtttctacaaatgagtgaagattatggagaaggaaacctaatgatacaaactgaaaatttccttaaccacatatt |
42662768 |
T |
|
| Q |
382 |
tggtcaatggacagacacactcaaggcactcaaaacatgtgaagaggttttacctttagctgaagagcttcacataacttcaagatgtatacattcttta |
481 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42662767 |
tggtcaatggacagacacactcaaggcactcaaaacatgtgaagatgttttacctttagctgaagagcttcacataacttcaagatgtatacattcttta |
42662668 |
T |
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| Q |
482 |
gttttgaaagctgcagatccaactttggctatattacctctctctg |
527 |
Q |
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| T |
42662667 |
gttttgaaagctgcagatccaactttggctatcttacctctctctg |
42662622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 42663176 - 42663129
Alignment:
| Q |
20 |
tgcacttcagtttaatacataaaatatcaagagtatctcatatatatg |
67 |
Q |
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| T |
42663176 |
tgcacttcagtttaatacataaaatatcaagagtatctcatatatatg |
42663129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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