View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5625_low_7 (Length: 469)

Name: NF5625_low_7
Description: NF5625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5625_low_7
NF5625_low_7
[»] chr7 (8 HSPs)
chr7 (13-469)||(16989412-16989868)
chr7 (58-467)||(16821217-16821626)
chr7 (37-190)||(16965223-16965376)
chr7 (58-191)||(17005006-17005139)
chr7 (225-464)||(17005149-17005388)
chr7 (106-469)||(10603982-10604342)
chr7 (106-202)||(16974226-16974322)
chr7 (358-469)||(16974475-16974586)
[»] chr2 (1 HSPs)
chr2 (106-202)||(35925048-35925144)
[»] chr4 (2 HSPs)
chr4 (106-202)||(35265754-35265850)
chr4 (415-469)||(35265490-35265544)


Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 13 - 469
Target Start/End: Original strand, 16989412 - 16989868
Alignment:
Q  13 ttattctcaaaggtgaatgagttctgagaacttttacaactctcgagaatttgcttatgaaaactgtccggcttcaaacacaacacacaatctcttaacc 112  Q
    |||||||| ||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||    
T  16989412 ttattctccaagatgaatgagttctgagaacttttaaaactctcaagaatttgcttatgaaaactatccggcttcaaacacagcacacaatctcttaacc 16989511  T
Q  113 caggaagcttcttttgtaggatcgcgcctttgtgaacatgaacaaagggatccataagcaatttcaactgcttgatcttatcgtcagaagtattacctgc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16989512 caggaagcttcttttgtaggatcgcgcctttgtgaacatgaacaaagggatccataagcaatttcaactgcttgatcttatcgtcagaagtattacctgc 16989611  T
Q  213 tgtgttgcccaaaaccggttcccaactccattctttaggagcttttttacgttcctgcttctggcaaaactttttcagctcttgcggtatcgttttatga 312  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16989612 tgtgttgccaaaaaccggttcccaactccattctttaggagcttttttacgttcctgcttctggcaaaactttttcagctcttgcggtatcgttttatga 16989711  T
Q  313 aaatacggccccaccacgctcaaagtgttgtatcgtcccaagacattgttctggaaagtagttccaaaaagaatgatacgctcgcgcgtttcaattttcg 412  Q
    ||| | |||| ||||| |||||||||||||||| || |||||| |||||||||||||| ||||||| |||| ||||| |||| |||||||| ||||||||    
T  16989712 aaagaaggcctcaccaagctcaaagtgttgtatagttccaagaaattgttctggaaaggagttccagaaaggatgattcgcttgcgcgtttgaattttcg 16989811  T
Q  413 tcaacaccttccaaataagactatttttatttctcggtgtatgtccttcgtctagaa 469  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16989812 acaacaccttccaaataagactatttttatttctcggtgtatgtccttcgtctagaa 16989868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 58 - 467
Target Start/End: Original strand, 16821217 - 16821626
Alignment:
Q  58 agaatttgcttatgaaaactgtccggcttcaaacacaacacacaatctcttaacccaggaagcttcttttgtaggatcgcgcctttgtgaacatgaacaa 157  Q
    ||||||||||| || ||||||||||||||||||  || |  ||||| ||||| |||||| ||||||||||| |||||||| ||||| |||||||||||||    
T  16821217 agaatttgcttctgcaaactgtccggcttcaaagtcagcttacaatttcttatcccagggagcttcttttgaaggatcgcacctttatgaacatgaacaa 16821316  T
Q  158 agggatccataagcaatttcaactgcttgatcttatcgtcagaagtattacctgctgtgttgcccaaaaccggttcccaactccattctttaggagcttt 257  Q
    | ||||||||||||||||| ||||| |||||||||| ||| |||| |||||  | || ||||||  || | | ||||||||||||||||| ||   ||||    
T  16821317 atggatccataagcaattttaactgtttgatcttatggtcggaaggattacaggttgagttgccataatcggcttcccaactccattcttcagatacttt 16821416  T
Q  258 tttacgttcctgcttctggcaaaactttttcagctcttgcggtatcgttttatgaaaatacggccccaccacgctcaaagtgttgtatcgtcccaagaca 357  Q
    ||||  |||||||||| ||||||||||||||||||| ||||||||||| ||| ||||  | |||  ||| | ||||||| |||||||  || |||||| |    
T  16821417 tttatattcctgcttcaggcaaaactttttcagctcatgcggtatcgtgttaggaaacgaaggcttcactaggctcaaaatgttgtacagttccaagaaa 16821516  T
Q  358 ttgttctggaaagtagttccaaaaagaatgatacgctcgcgcgtttcaattttcgtcaacaccttccaaataagactatttttatttctcggtgtatgtc 457  Q
    ||||||||||||| ||||||| |||| ||||| |||| ||| |||| |||||||| ||| |||||||||||||||||  ||| |||||||||| | ||||    
T  16821517 ttgttctggaaaggagttccagaaaggatgatccgcttgcgggtttgaattttcgacaataccttccaaataagacttctttcatttctcggtatgtgtc 16821616  T
Q  458 cttcgtctag 467  Q
    |||| |||||    
T  16821617 cttcatctag 16821626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 37 - 190
Target Start/End: Original strand, 16965223 - 16965376
Alignment:
Q  37 tgagaacttttacaactctcgagaatttgcttatgaaaactgtccggcttcaaacacaacacacaatctcttaacccaggaagcttcttttgtaggatcg 136  Q
    ||||||||||||   ||||| ||| ||||||| |||||||||||||||||||||  ||  | ||||| ||||||||| |||||||||||||| |||||||    
T  16965223 tgagaacttttaatgctctcaagagtttgcttctgaaaactgtccggcttcaaagtcagaatacaatttcttaacccgggaagcttcttttgaaggatcg 16965322  T
Q  137 cgcctttgtgaacatgaacaaagggatccataagcaatttcaactgcttgatct 190  Q
    | ||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  16965323 cacctttgtgaacatgaacaaagggatccataagcaactttaactgcttgatct 16965376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 58 - 191
Target Start/End: Original strand, 17005006 - 17005139
Alignment:
Q  58 agaatttgcttatgaaaactgtccggcttcaaacacaacacacaatctcttaacccaggaagcttcttttgtaggatcgcgcctttgtgaacatgaacaa 157  Q
    ||||||| ||| ||||| ||||||||| |||||| || |||||| | ||||||||| |||||| ||||||| ||||||||||||||||||||||||||||    
T  17005006 agaattttcttgtgaaagctgtccggcatcaaacgcagcacacattttcttaacccgggaagcatcttttgaaggatcgcgcctttgtgaacatgaacaa 17005105  T
Q  158 agggatccataagcaatttcaactgcttgatctt 191  Q
    ||||||||||||||||||| ||||||||||||||    
T  17005106 agggatccataagcaattttaactgcttgatctt 17005139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 225 - 464
Target Start/End: Original strand, 17005149 - 17005388
Alignment:
Q  225 aaccggttcccaactccattctttaggagcttttttacgttcctgcttctggcaaaactttttcagctcttgcggtatcgttttatgaaaatacggcccc 324  Q
    ||||||||||||| ||||||||||||  ||||||||| | |||| ||||||||||||| |||||||||| || || ||||| ||| ||||| | |||  |    
T  17005149 aaccggttcccaaatccattctttagatgcttttttatggtccttcttctggcaaaacattttcagctcgtgtggcatcgtattaggaaaagaaggcttc 17005248  T
Q  325 accacgctcaaagtgttgtatcgtcccaagacattgttctggaaagtagttccaaaaagaatgatacgctcgcgcgtttcaattttcgtcaacaccttcc 424  Q
    || | |||||||||||||||| || ||| ||  ||||||||||||| ||||||| |||| ||||| ||||  || |||| || || || ||| || | ||    
T  17005249 actaagctcaaagtgttgtatagttccatgaagttgttctggaaaggagttccagaaaggatgattcgctttcgtgtttgaacttccgacaaaacttgcc 17005348  T
Q  425 aaataagactatttttatttctcggtgtatgtccttcgtc 464  Q
    |||||  ||| ||||| ||||| || ||||||||||||||    
T  17005349 aaataccactttttttgtttcttggcgtatgtccttcgtc 17005388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 106 - 469
Target Start/End: Complemental strand, 10604342 - 10603982
Alignment:
Q  106 cttaacccaggaagcttcttttgtaggatcgcgcctttgtgaacatgaacaaagggatccataagcaatttcaactgcttgatcttatcgtcagaagtat 205  Q
    |||||||| |||||||| ||||  |||||||| |||||||||||||| |||||||||||||| |||| ||||| || |||||||||||| |||||||  |    
T  10604342 cttaacccgggaagcttattttcaaggatcgcccctttgtgaacatgtacaaagggatccattagcattttcagcttcttgatcttatcatcagaagggt 10604243  T
Q  206 tacctgctgtgttgcccaaaaccggttcccaactccattctttaggagcttttttacgttcctgcttctggcaaaactttttcagctcttgcggtatcgt 305  Q
      | || |||||||||  |||| ||||| |||||||  | |||   || |  |||| || ||||||| ||||||||  |||| |||||  ||||||||||    
T  10604242 ctcttgttgtgttgcctgaaacaggttcacaactccgcttttt---agatgatttatgtccctgcttatggcaaaaactttttagctcaggcggtatcgt 10604146  T
Q  306 tttatgaaaatacggccccaccacgctcaaagtgttgtatcgtcccaagacattgttctggaaagtagttccaaaaagaatgatacgctcgcgcgtttca 405  Q
     ||| ||||| | |||  ||| | ||| || ||| ||||  |  || ||| |||||||||||| | ||||||  |||| ||||| ||||   ||| || |    
T  10604145 gttaggaaaagaaggcttcactaagcttaaggtgctgtaaagctcccagaaattgttctggaatggagttccggaaaggatgattcgcttctgcgcttga 10604046  T
Q  406 attttcgtcaacaccttccaaataagactatttttatttctcggtgtatgtccttcgtctagaa 469  Q
    || || | |||||||||||||||| ||||  ||| |||||| ||||| |||||||| |||||||    
T  10604045 atcttggacaacaccttccaaatatgacttctttgatttcttggtgtgtgtccttcatctagaa 10603982  T

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Target: chr7; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 16974226 - 16974322
Alignment:
Q  106 cttaacccaggaagcttcttttgtaggatcgcgcctttgtgaacatgaacaaagggatccataagcaatttcaactgcttgatcttatcgtcagaag 202  Q
    |||||||| |||||||| ||||  ||||| ||||||||||| ||||| |||||||||||||| |||||||| |||| |||||||| ||| |||||||    
T  16974226 cttaaccctggaagcttattttcaaggattgcgcctttgtgcacatgtacaaagggatccattagcaatttaaacttcttgatctgatcatcagaag 16974322  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 358 - 469
Target Start/End: Original strand, 16974475 - 16974586
Alignment:
Q  358 ttgttctggaaagtagttccaaaaagaatgatacgctcgcgcgtttcaattttcgtcaacaccttccaaataagactatttttatttctcggtgtatgtc 457  Q
    ||||||||||| | ||||||  |||| ||||||||||   |||||| ||  ||||  ||||||||||||||| ||||  ||| |||||| || || ||||    
T  16974475 ttgttctggaatggagttccggaaaggatgatacgcttctgcgtttgaagcttcgaaaacaccttccaaatatgacttctttgatttcttggcgtgtgtc 16974574  T
Q  458 cttcgtctagaa 469  Q
    ||||||||||||    
T  16974575 cttcgtctagaa 16974586  T

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Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 106 - 202
Target Start/End: Original strand, 35925048 - 35925144
Alignment:
Q  106 cttaacccaggaagcttcttttgtaggatcgcgcctttgtgaacatgaacaaagggatccataagcaatttcaactgcttgatcttatcgtcagaag 202  Q
    ||||||||||||||||| ||||  |||| |||||||||||  |||||||||||||||||||| |||||||| |||| |||||||| ||| |||||||    
T  35925048 cttaacccaggaagcttatttttaaggaccgcgcctttgtccacatgaacaaagggatccattagcaatttaaacttcttgatctgatcatcagaag 35925144  T

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Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 106 - 202
Target Start/End: Complemental strand, 35265850 - 35265754
Alignment:
Q  106 cttaacccaggaagcttcttttgtaggatcgcgcctttgtgaacatgaacaaagggatccataagcaatttcaactgcttgatcttatcgtcagaag 202  Q
    ||||||||||||||||| ||||  ||||  ||||||||||  |||||||||||||||||||| |||||||| |||| |||||||| ||| |||||||    
T  35265850 cttaacccaggaagcttattttaaaggaaagcgcctttgtacacatgaacaaagggatccattagcaatttaaacttcttgatctgatcatcagaag 35265754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 415 - 469
Target Start/End: Complemental strand, 35265544 - 35265490
Alignment:
Q  415 aacaccttccaaataagactatttttatttctcggtgtatgtccttcgtctagaa 469  Q
    ||||||||||||||| ||||  ||| |||||| ||||| ||||||||||||||||    
T  35265544 aacaccttccaaatatgacttctttgatttcttggtgtgtgtccttcgtctagaa 35265490  T

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